Wall clock time and date at job start Wed Apr 1 2020 04:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.47084 * 2 1 4 4 C 1.52997 * 109.47541 * 240.00240 * 2 1 3 5 5 N 1.46499 * 109.47286 * 119.99630 * 2 1 3 6 6 C 1.34261 * 125.75120 * 75.00149 * 5 2 1 7 7 C 1.38034 * 107.41772 * 179.97438 * 6 5 2 8 8 C 1.47438 * 126.41532 * 179.97438 * 7 6 5 9 9 O 1.21603 * 119.99911 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99872 * 179.97438 * 8 7 6 11 11 C 1.46901 * 125.62096 * 0.03270 * 10 8 7 12 12 C 1.54210 * 107.63552 * 178.45551 * 11 10 8 13 13 H 1.08996 * 113.72149 * 215.27709 * 12 11 10 14 14 C 1.54844 * 108.04471 * 87.00470 * 12 11 10 15 15 C 1.54134 * 104.63015 * 214.54038 * 14 12 11 16 16 C 1.53867 * 106.49271 * 24.50532 * 15 14 12 17 17 H 1.09004 * 110.09254 * 238.85765 * 16 15 14 18 18 N 1.46504 * 109.92483 * 117.64271 * 16 15 14 19 19 C 1.36943 * 119.99781 * 87.43957 * 18 16 15 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 16 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48496 * 109.47031 * 59.99836 * 23 21 19 25 25 H 1.48497 * 109.47267 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47169 * 300.00118 * 23 21 19 27 27 C 1.53712 * 107.02964 * 358.29928 * 16 15 14 28 28 H 1.09008 * 112.96879 * 214.07941 * 27 16 15 29 29 C 1.47345 * 125.61345 * 180.02562 * 10 8 7 30 30 C 1.41294 * 107.17362 * 0.22700 * 7 6 5 31 31 N 1.30446 * 108.01774 * 359.61773 * 30 7 6 32 32 H 1.09000 * 109.47554 * 300.00278 * 1 2 3 33 33 H 1.09003 * 109.47023 * 59.99893 * 1 2 3 34 34 H 1.08995 * 109.47334 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.46896 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.46906 * 299.99729 * 3 2 1 37 37 H 1.09003 * 109.46729 * 60.00104 * 3 2 1 38 38 H 1.09004 * 109.46706 * 299.99938 * 4 2 1 39 39 H 1.08997 * 109.47438 * 59.99665 * 4 2 1 40 40 H 1.08995 * 109.47723 * 180.02562 * 4 2 1 41 41 H 1.08003 * 126.29054 * 359.95520 * 6 5 2 42 42 H 1.09007 * 109.82204 * 297.98151 * 11 10 8 43 43 H 1.09005 * 109.82276 * 58.84121 * 11 10 8 44 44 H 1.08997 * 110.40666 * 333.33075 * 14 12 11 45 45 H 1.08998 * 110.40490 * 95.64167 * 14 12 11 46 46 H 1.08992 * 110.05593 * 265.24743 * 15 14 12 47 47 H 1.08999 * 110.04899 * 143.75595 * 15 14 12 48 48 H 0.97000 * 120.00410 * 267.44282 * 18 16 15 49 49 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 50 50 H 1.08992 * 110.30117 * 85.00426 * 29 10 8 51 51 H 1.09003 * 110.37696 * 322.90227 * 29 10 8 52 52 H 1.07993 * 125.98778 * 179.74176 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 2.0140 -2.0188 1.3919 7 6 2.5572 -2.2545 2.6388 8 6 2.7507 -3.5705 3.2747 9 8 2.4178 -4.5833 2.6896 10 7 3.2975 -3.6511 4.5039 11 6 3.7427 -2.5127 5.3186 12 6 4.2624 -3.0720 6.6585 13 1 4.0532 -2.4284 7.5129 14 6 5.7569 -3.4353 6.4792 15 6 5.9632 -4.6817 7.3621 16 6 4.5852 -5.3523 7.4999 17 1 4.3022 -5.4140 8.5507 18 7 4.6222 -6.6944 6.9136 19 6 5.0136 -7.7635 7.6746 20 1 5.2954 -7.6171 8.7069 21 6 5.0542 -9.0342 7.1175 22 7 4.7114 -9.2125 5.8593 23 14 5.5956 -10.4913 8.1534 24 1 4.6835 -10.6382 9.3160 25 1 5.5515 -11.7270 7.3310 26 1 6.9817 -10.2671 8.6370 27 6 3.5794 -4.4752 6.7371 28 1 2.5919 -4.4608 7.1986 29 6 3.5470 -4.8958 5.2520 30 6 2.8878 -0.9980 3.1941 31 7 2.5685 -0.0771 2.3272 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 3.1300 1.4426 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 1.6767 -1.7489 -1.2492 39 1 1.6767 -0.2074 -2.1392 40 1 3.1300 -0.7216 -1.2490 41 1 1.6517 -2.7656 0.7009 42 1 4.5435 -1.9810 4.8045 43 1 2.9063 -1.8371 5.4981 44 1 5.9686 -3.6692 5.4359 45 1 6.3906 -2.6167 6.8205 46 1 6.3353 -4.3873 8.3433 47 1 6.6654 -5.3654 6.8851 48 1 4.3695 -6.8258 5.9863 49 1 4.7394 -10.1005 5.4702 50 1 4.5044 -5.3271 4.9600 51 1 2.7423 -5.6105 5.0789 52 1 3.3295 -0.8298 4.1651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026297328.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:22 Heat of formation + Delta-G solvation = 65.079349 kcal Electronic energy + Delta-G solvation = -31146.137474 eV Core-core repulsion = 27147.831409 eV Total energy + Delta-G solvation = -3998.306066 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.69010 -40.20716 -38.15047 -37.01553 -35.05103 -33.19824 -31.13067 -30.90292 -30.57575 -28.82535 -28.39129 -27.95686 -27.79019 -25.57126 -24.06127 -23.19906 -22.91622 -21.43038 -19.89881 -19.59882 -19.25395 -18.78308 -17.34841 -17.12407 -16.43081 -15.80222 -15.56634 -15.22970 -14.97818 -14.82557 -14.59465 -14.36468 -13.96633 -13.86774 -13.41187 -13.15242 -13.01339 -12.88268 -12.80233 -12.73647 -12.63941 -12.34085 -12.28891 -12.23749 -12.06995 -11.70183 -11.67968 -11.51919 -11.21442 -11.04939 -10.75660 -10.61334 -10.46491 -10.40213 -10.21607 -10.10825 -9.82710 -9.71031 -9.56095 -9.52712 -8.85198 -8.81106 -8.26805 -6.91048 -5.70777 -3.00530 1.47499 2.06118 2.14297 3.26647 3.47424 3.51793 3.53224 3.62148 3.95614 4.22814 4.33289 4.52568 4.54368 4.58996 4.64983 4.80849 4.92668 4.95960 4.98712 5.13000 5.14892 5.18086 5.24442 5.29226 5.34951 5.40847 5.46503 5.48848 5.51246 5.58252 5.65331 5.66280 5.68743 5.76387 5.82749 5.94736 6.00989 6.06356 6.12935 6.29118 6.34597 6.45116 6.58540 6.58819 6.65907 6.69690 6.74280 6.85158 7.15560 7.42775 7.75137 7.83932 8.47081 8.51071 9.58055 10.15793 10.49107 11.51361 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020458 B = 0.002321 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.298659 B =12059.959221 C =13012.617689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 C -0.143 4.143 4 C -0.163 4.163 5 N -0.352 5.352 6 C 0.125 3.875 7 C -0.283 4.283 8 C 0.604 3.396 9 O -0.547 6.547 10 N -0.610 5.610 11 C 0.101 3.899 12 C -0.103 4.103 13 H 0.103 0.897 14 C -0.115 4.115 15 C -0.145 4.145 16 C 0.183 3.817 17 H 0.054 0.946 18 N -0.725 5.725 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 C -0.105 4.105 28 H 0.088 0.912 29 C 0.119 3.881 30 C 0.065 3.935 31 N -0.297 5.297 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.183 0.817 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.073 0.927 48 H 0.387 0.613 49 H 0.256 0.744 50 H 0.081 0.919 51 H 0.080 0.920 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.071 24.639 -10.502 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 C -0.200 4.200 4 C -0.221 4.221 5 N -0.133 5.133 6 C -0.026 4.026 7 C -0.298 4.298 8 C 0.393 3.607 9 O -0.426 6.426 10 N -0.343 5.343 11 C -0.022 4.022 12 C -0.122 4.122 13 H 0.121 0.879 14 C -0.153 4.153 15 C -0.186 4.186 16 C 0.072 3.928 17 H 0.072 0.928 18 N -0.368 5.368 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 C -0.125 4.125 28 H 0.106 0.894 29 C -0.002 4.002 30 C -0.122 4.122 31 N -0.117 5.117 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.200 0.800 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.092 0.908 48 H 0.223 0.777 49 H 0.066 0.934 50 H 0.099 0.901 51 H 0.099 0.901 52 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.300 25.283 -11.167 28.348 hybrid contribution 0.312 -1.826 0.462 1.909 sum -5.989 23.457 -10.706 26.470 Atomic orbital electron populations 1.22282 0.92622 1.03441 1.03551 1.20848 0.94612 0.93924 0.81198 1.21910 1.02294 0.92650 1.03171 1.22289 1.02606 1.01289 0.95937 1.48818 1.46093 1.04169 1.14172 1.22810 0.96453 0.86378 0.96943 1.20249 1.17604 0.94232 0.97696 1.16866 0.76910 0.87293 0.79609 1.90802 1.52017 1.36937 1.62852 1.48232 1.61314 1.08760 1.15989 1.22299 0.98437 0.89420 0.92058 1.23177 0.96462 0.96825 0.95745 0.87914 1.22403 0.94150 0.98088 1.00625 1.22970 1.00940 0.96235 0.98435 1.20674 0.90736 0.85568 0.95850 0.92832 1.42717 1.80291 1.01020 1.12798 1.19194 1.37235 0.86573 0.94300 0.91245 1.24751 1.02373 0.97543 0.96203 1.69650 1.54212 1.21986 1.11994 0.86296 0.78384 0.82481 0.79160 1.21331 1.21774 1.21349 1.23229 0.99729 0.94325 0.95261 0.89406 1.22162 1.02699 0.85815 0.89572 1.24769 0.98130 0.89759 0.99563 1.77119 1.18206 1.22128 0.94217 0.91448 0.90159 0.91550 0.91515 0.90843 0.90880 0.91268 0.89828 0.91276 0.79962 0.91281 0.91607 0.91720 0.92373 0.93049 0.90812 0.77690 0.93402 0.90059 0.90134 0.78534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 8.72 37.16 0.32 -0.61 16 2 C 0.18 1.24 1.23 -131.82 -0.16 1.08 16 3 C -0.14 -0.90 8.07 37.16 0.30 -0.60 16 4 C -0.16 -0.91 8.28 37.16 0.31 -0.60 16 5 N -0.35 -3.63 3.41 -48.11 -0.16 -3.80 16 6 C 0.13 1.47 10.39 -16.56 -0.17 1.30 16 7 C -0.28 -3.88 6.09 -105.06 -0.64 -4.52 16 8 C 0.60 10.31 7.84 -12.51 -0.10 10.21 16 9 O -0.55 -11.50 17.15 5.27 0.09 -11.41 16 10 N -0.61 -9.61 3.32 -172.34 -0.57 -10.18 16 11 C 0.10 1.18 4.22 -3.19 -0.01 1.17 16 12 C -0.10 -1.26 4.25 -87.27 -0.37 -1.63 16 13 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.11 -1.56 5.58 -25.17 -0.14 -1.70 16 15 C -0.15 -2.45 6.57 -25.69 -0.17 -2.62 16 16 C 0.18 3.48 3.24 -67.11 -0.22 3.26 16 17 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 18 N -0.73 -17.87 4.79 -52.62 -0.25 -18.12 16 19 C -0.24 -6.66 9.95 -15.06 -0.15 -6.81 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 23 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C -0.11 -1.69 4.03 -87.78 -0.35 -2.04 16 28 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 29 C 0.12 2.18 4.40 -2.85 -0.01 2.17 16 30 C 0.06 0.76 10.44 -16.98 -0.18 0.58 16 31 N -0.30 -3.49 11.56 30.86 0.36 -3.14 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.53 8.03 -51.93 -0.42 0.12 16 38 H 0.07 0.38 7.34 -51.93 -0.38 0.00 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.18 1.86 7.53 -52.48 -0.40 1.46 16 42 H 0.07 0.72 6.73 -51.92 -0.35 0.37 16 43 H 0.07 0.65 6.76 -51.93 -0.35 0.30 16 44 H 0.06 0.96 7.27 -51.93 -0.38 0.58 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 1.46 7.91 -51.93 -0.41 1.05 16 48 H 0.39 10.20 5.33 -40.82 -0.22 9.98 16 49 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 50 H 0.08 1.69 6.28 -51.93 -0.33 1.36 16 51 H 0.08 1.69 8.02 -51.93 -0.42 1.27 16 52 H 0.20 1.85 4.47 -52.49 -0.23 1.61 16 LS Contribution 402.44 15.07 6.06 6.06 Total: -1.00 -34.39 402.44 -9.11 -43.50 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -8.49 Total: 9.14 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.84 Total: -1.80 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.09 Total: -63.03 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.39 -9.11 -43.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026297328.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.578 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds