Wall clock time and date at job start Wed Apr 1 2020 04:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47355 * 2 1 4 4 C 1.53006 * 109.46767 * 239.99673 * 2 1 3 5 5 N 1.46497 * 109.47132 * 120.00533 * 2 1 3 6 6 C 1.34259 * 125.75807 * 74.99050 * 5 2 1 7 7 C 1.38047 * 107.41508 * 180.20753 * 6 5 2 8 8 C 1.47439 * 126.41115 * 179.73797 * 7 6 5 9 9 O 1.21593 * 119.99843 * 355.11760 * 8 7 6 10 10 N 1.34778 * 119.99798 * 175.11824 * 8 7 6 11 11 C 1.49215 * 126.05633 * 5.42195 * 10 8 7 12 12 C 1.50354 * 104.86155 * 172.94122 * 11 10 8 13 13 H 1.09001 * 110.05585 * 278.94196 * 12 11 10 14 14 C 1.51004 * 125.54592 * 144.30223 * 12 11 10 15 15 C 1.56405 * 101.59360 * 204.00308 * 14 12 11 16 16 C 1.55933 * 105.79053 * 25.01574 * 15 14 12 17 17 H 1.09000 * 110.60805 * 248.81588 * 16 15 14 18 18 N 1.46504 * 110.49285 * 126.20954 * 16 15 14 19 19 C 1.36939 * 120.00104 * 90.26547 * 18 16 15 20 20 H 1.07999 * 119.99781 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00180 * 179.97438 * 19 18 16 22 22 N 1.31622 * 119.99848 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99852 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46975 * 90.00305 * 23 21 19 25 25 H 1.48499 * 109.46745 * 209.99924 * 23 21 19 26 26 H 1.48493 * 109.47172 * 329.99901 * 23 21 19 27 27 C 1.50294 * 104.15924 * 7.54253 * 16 15 14 28 28 H 1.08996 * 109.98997 * 80.47414 * 27 16 15 29 29 C 1.49698 * 126.05704 * 185.11908 * 10 8 7 30 30 C 1.41284 * 107.17539 * 359.64923 * 7 6 5 31 31 N 1.30454 * 108.02029 * 0.35723 * 30 7 6 32 32 H 1.09004 * 109.46567 * 300.00067 * 1 2 3 33 33 H 1.09001 * 109.47093 * 59.99945 * 1 2 3 34 34 H 1.08998 * 109.47568 * 179.97438 * 1 2 3 35 35 H 1.09008 * 109.46736 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47206 * 299.99535 * 3 2 1 37 37 H 1.08997 * 109.47047 * 60.00195 * 3 2 1 38 38 H 1.08998 * 109.47414 * 300.00508 * 4 2 1 39 39 H 1.09001 * 109.47002 * 60.00326 * 4 2 1 40 40 H 1.09002 * 109.46769 * 180.02562 * 4 2 1 41 41 H 1.07997 * 126.29451 * 359.95043 * 6 5 2 42 42 H 1.08999 * 110.36352 * 291.78231 * 11 10 8 43 43 H 1.08994 * 110.36450 * 54.09751 * 11 10 8 44 44 H 1.09002 * 110.99958 * 322.07771 * 14 12 11 45 45 H 1.09000 * 111.00314 * 85.92457 * 14 12 11 46 46 H 1.08998 * 110.18644 * 265.93164 * 15 14 12 47 47 H 1.09004 * 110.18307 * 144.09603 * 15 14 12 48 48 H 0.96998 * 120.00451 * 270.25787 * 18 16 15 49 49 H 0.97004 * 119.99444 * 180.02562 * 22 21 19 50 50 H 1.09000 * 110.83993 * 273.04792 * 29 10 8 51 51 H 1.08995 * 110.84537 * 36.66311 * 29 10 8 52 52 H 1.08001 * 125.99570 * 180.11568 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7214 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.0138 -2.0189 1.3918 7 6 2.5523 -2.2543 2.6410 8 6 2.7394 -3.5700 3.2796 9 8 2.3245 -4.5747 2.7348 10 7 3.3704 -3.6589 4.4672 11 6 3.8303 -2.5132 5.3053 12 6 4.3030 -3.1391 6.5881 13 1 3.4529 -3.3483 7.2374 14 6 5.4733 -2.6658 7.4168 15 6 5.8625 -3.9712 8.1855 16 6 5.3581 -5.1514 7.3000 17 1 4.5268 -5.6652 7.7826 18 7 6.4495 -6.0896 7.0256 19 6 6.6751 -7.1434 7.8705 20 1 6.0483 -7.2831 8.7388 21 6 7.7088 -8.0325 7.6103 22 7 8.4718 -7.8631 6.5513 23 14 8.0171 -9.4696 8.7633 24 1 7.2265 -10.6434 8.3135 25 1 9.4619 -9.8122 8.7519 26 1 7.6078 -9.0956 10.1409 27 6 4.9017 -4.4895 6.0302 28 1 5.7589 -4.2792 5.3907 29 6 3.7282 -4.9244 5.1823 30 6 2.8925 -0.9986 3.1920 31 7 2.5685 -0.0772 2.3271 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 3.1301 1.4423 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 1.6765 -1.7490 -1.2493 39 1 1.6766 -0.2075 -2.1393 40 1 3.1300 -0.7218 -1.2490 41 1 1.6514 -2.7657 0.7010 42 1 4.6504 -1.9893 4.8143 43 1 3.0042 -1.8292 5.4991 44 1 6.2915 -2.3286 6.7804 45 1 5.1696 -1.8806 8.1090 46 1 5.3722 -3.9949 9.1587 47 1 6.9442 -4.0277 8.3071 48 1 7.0122 -5.9644 6.2455 49 1 9.1939 -8.4847 6.3693 50 1 2.9012 -5.2648 5.8055 51 1 4.0267 -5.6983 4.4752 52 1 3.3387 -0.8305 4.1610 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026297330.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:32 Heat of formation + Delta-G solvation = 74.262029 kcal Electronic energy + Delta-G solvation = -30703.654196 eV Core-core repulsion = 26705.746321 eV Total energy + Delta-G solvation = -3997.907875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.73454 -40.30667 -38.31923 -37.06792 -35.26721 -33.35606 -31.22806 -30.88516 -30.72647 -28.98369 -28.49859 -27.99491 -27.80946 -25.51874 -23.93852 -23.16996 -22.75412 -21.50771 -20.20165 -19.82411 -19.39585 -18.87786 -17.36533 -17.02174 -16.30577 -16.10644 -15.77277 -15.16821 -15.00221 -14.71263 -14.66055 -14.37252 -14.07982 -13.90280 -13.75635 -13.39763 -13.09019 -12.88828 -12.82632 -12.79159 -12.69743 -12.58804 -12.30859 -12.09398 -11.83274 -11.73572 -11.71928 -11.52226 -11.35266 -11.16734 -10.90171 -10.76479 -10.72659 -10.40681 -10.12337 -10.08210 -9.79044 -9.75616 -9.68235 -9.51015 -8.90015 -8.88110 -8.46316 -6.94693 -5.75072 -3.04010 1.41195 2.01065 2.08389 3.02367 3.45284 3.50447 3.51600 3.51908 3.90524 4.18959 4.20035 4.29731 4.48278 4.54721 4.60455 4.83632 4.91034 4.92222 4.96041 5.10395 5.13429 5.17927 5.20466 5.26514 5.29897 5.30869 5.36908 5.42487 5.47088 5.51828 5.60120 5.61557 5.65718 5.73754 5.78286 5.90719 5.97221 6.06270 6.09279 6.18862 6.19969 6.35108 6.38226 6.43260 6.55142 6.64474 6.68780 6.81892 7.08838 7.37868 7.68018 7.72479 8.36596 8.43227 9.54508 10.11714 10.46010 11.47357 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.002099 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.270589 B =13337.919908 C =13933.382735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 C -0.143 4.143 4 C -0.163 4.163 5 N -0.352 5.352 6 C 0.126 3.874 7 C -0.285 4.285 8 C 0.609 3.391 9 O -0.554 6.554 10 N -0.620 5.620 11 C 0.117 3.883 12 C -0.131 4.131 13 H 0.082 0.918 14 C -0.097 4.097 15 C -0.143 4.143 16 C 0.196 3.804 17 H 0.056 0.944 18 N -0.720 5.720 19 C -0.239 4.239 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.117 4.117 28 H 0.082 0.918 29 C 0.132 3.868 30 C 0.067 3.933 31 N -0.296 5.296 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.183 0.817 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.054 0.946 47 H 0.073 0.927 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.070 0.930 51 H 0.082 0.918 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.418 21.189 -12.267 28.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 C -0.201 4.201 4 C -0.221 4.221 5 N -0.132 5.132 6 C -0.026 4.026 7 C -0.300 4.300 8 C 0.398 3.602 9 O -0.433 6.433 10 N -0.355 5.355 11 C -0.005 4.005 12 C -0.151 4.151 13 H 0.100 0.900 14 C -0.136 4.136 15 C -0.184 4.184 16 C 0.084 3.916 17 H 0.074 0.926 18 N -0.360 5.360 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.137 4.137 28 H 0.100 0.900 29 C 0.012 3.988 30 C -0.121 4.121 31 N -0.115 5.115 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.200 0.800 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.092 0.908 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.101 0.899 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -15.742 21.850 -12.892 29.857 hybrid contribution 0.486 -1.665 0.577 1.828 sum -15.256 20.185 -12.315 28.140 Atomic orbital electron populations 1.22283 0.92611 1.03398 1.03582 1.20859 0.94610 0.93968 0.81169 1.21913 1.02348 0.92604 1.03201 1.22292 1.02648 1.01231 0.95947 1.48835 1.46047 1.04152 1.14146 1.22800 0.96424 0.86429 0.96901 1.20223 1.17741 0.94248 0.97764 1.16862 0.76887 0.87216 0.79190 1.90768 1.50950 1.37683 1.63889 1.49563 1.58277 1.08163 1.19453 1.21509 0.98776 0.88983 0.91221 1.22202 0.99247 0.98164 0.95437 0.89965 1.21751 0.95895 0.97991 0.97919 1.23803 1.02284 0.93884 0.98458 1.20097 0.91292 0.89433 0.90741 0.92554 1.42497 1.34617 1.28504 1.30377 1.19247 1.11376 1.02203 1.04225 0.91138 1.24748 0.98584 0.99486 0.98126 1.69665 1.21589 1.38811 1.27958 0.86209 0.77059 0.82846 0.80187 1.21738 1.21858 1.20779 1.22578 0.97162 0.96059 0.97949 0.89989 1.21542 0.96456 0.85787 0.95047 1.24743 0.97942 0.89739 0.99632 1.77144 1.18039 1.22074 0.94274 0.91437 0.90137 0.91587 0.91470 0.90818 0.90857 0.91312 0.89795 0.91239 0.79996 0.90986 0.90911 0.91591 0.92165 0.92692 0.90787 0.78160 0.93529 0.91178 0.89919 0.78570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 8.72 37.16 0.32 -0.53 16 2 C 0.18 1.16 1.23 -131.82 -0.16 1.00 16 3 C -0.14 -0.86 8.07 37.16 0.30 -0.56 16 4 C -0.16 -0.83 8.28 37.16 0.31 -0.53 16 5 N -0.35 -3.45 3.41 -48.11 -0.16 -3.62 16 6 C 0.13 1.39 10.39 -16.56 -0.17 1.21 16 7 C -0.28 -3.68 6.09 -105.06 -0.64 -4.32 16 8 C 0.61 9.58 7.86 -12.51 -0.10 9.49 16 9 O -0.55 -10.58 17.27 5.28 0.09 -10.49 16 10 N -0.62 -8.99 3.42 -172.67 -0.59 -9.58 16 11 C 0.12 1.32 4.80 -3.86 -0.02 1.30 16 12 C -0.13 -1.62 2.76 -90.26 -0.25 -1.87 16 13 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.10 -1.22 6.72 -25.90 -0.17 -1.39 16 15 C -0.14 -2.33 6.74 -23.33 -0.16 -2.49 16 16 C 0.20 3.68 3.41 -67.71 -0.23 3.44 16 17 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 18 N -0.72 -17.51 5.10 -53.21 -0.27 -17.78 16 19 C -0.24 -6.52 9.96 -15.06 -0.15 -6.67 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 23 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 C -0.12 -1.88 2.43 -90.20 -0.22 -2.10 16 28 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 29 C 0.13 2.13 6.81 -3.18 -0.02 2.11 16 30 C 0.07 0.75 10.55 -16.98 -0.18 0.57 16 31 N -0.30 -3.37 11.56 30.86 0.36 -3.02 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.52 8.03 -51.93 -0.42 0.10 16 38 H 0.07 0.34 7.34 -51.93 -0.38 -0.04 16 39 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.18 1.69 7.53 -52.49 -0.40 1.29 16 42 H 0.07 0.75 7.33 -51.93 -0.38 0.37 16 43 H 0.07 0.67 6.68 -51.93 -0.35 0.33 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 1.38 7.98 -51.93 -0.41 0.97 16 48 H 0.38 10.06 7.67 -40.82 -0.31 9.75 16 49 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 51 H 0.08 1.50 8.13 -51.93 -0.42 1.08 16 52 H 0.20 1.78 4.50 -52.49 -0.24 1.55 16 LS Contribution 410.08 15.07 6.18 6.18 Total: -1.00 -33.58 410.08 -9.09 -42.68 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -8.76 Total: 7.44 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.64 Total: -1.81 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.05 Total: -61.34 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.58 -9.09 -42.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026297330.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.938 kcal (2) G-P(sol) polarization free energy of solvation -33.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds