Wall clock time and date at job start Wed Apr 1 2020 04:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47355 * 2 1 4 4 C 1.53006 * 109.46767 * 239.99673 * 2 1 3 5 5 N 1.46497 * 109.47132 * 120.00533 * 2 1 3 6 6 C 1.34259 * 125.75807 * 74.99050 * 5 2 1 7 7 C 1.38047 * 107.41508 * 180.20753 * 6 5 2 8 8 C 1.47439 * 126.41115 * 179.73797 * 7 6 5 9 9 O 1.21593 * 119.99843 * 355.11760 * 8 7 6 10 10 N 1.34778 * 119.99798 * 175.11824 * 8 7 6 11 11 C 1.49215 * 126.05633 * 5.42195 * 10 8 7 12 12 C 1.50354 * 104.86155 * 172.94122 * 11 10 8 13 13 H 1.09001 * 110.05585 * 278.94196 * 12 11 10 14 14 C 1.51004 * 125.54592 * 144.30223 * 12 11 10 15 15 C 1.56405 * 101.59360 * 204.00308 * 14 12 11 16 16 C 1.55933 * 105.79053 * 25.01574 * 15 14 12 17 17 H 1.09000 * 110.60805 * 248.81588 * 16 15 14 18 18 N 1.46504 * 110.49285 * 126.20954 * 16 15 14 19 19 C 1.36939 * 120.00104 * 90.26547 * 18 16 15 20 20 H 1.07999 * 119.99781 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00180 * 179.97438 * 19 18 16 22 22 N 1.31622 * 119.99848 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99852 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46975 * 90.00305 * 23 21 19 25 25 H 1.48499 * 109.46745 * 209.99924 * 23 21 19 26 26 H 1.48493 * 109.47172 * 329.99901 * 23 21 19 27 27 C 1.50294 * 104.15924 * 7.54253 * 16 15 14 28 28 H 1.08996 * 109.98997 * 80.47414 * 27 16 15 29 29 C 1.49698 * 126.05704 * 185.11908 * 10 8 7 30 30 C 1.41284 * 107.17539 * 359.64923 * 7 6 5 31 31 N 1.30454 * 108.02029 * 0.35723 * 30 7 6 32 32 H 1.09004 * 109.46567 * 300.00067 * 1 2 3 33 33 H 1.09001 * 109.47093 * 59.99945 * 1 2 3 34 34 H 1.08998 * 109.47568 * 179.97438 * 1 2 3 35 35 H 1.09008 * 109.46736 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47206 * 299.99535 * 3 2 1 37 37 H 1.08997 * 109.47047 * 60.00195 * 3 2 1 38 38 H 1.08998 * 109.47414 * 300.00508 * 4 2 1 39 39 H 1.09001 * 109.47002 * 60.00326 * 4 2 1 40 40 H 1.09002 * 109.46769 * 180.02562 * 4 2 1 41 41 H 1.07997 * 126.29451 * 359.95043 * 6 5 2 42 42 H 1.08999 * 110.36352 * 291.78231 * 11 10 8 43 43 H 1.08994 * 110.36450 * 54.09751 * 11 10 8 44 44 H 1.09002 * 110.99958 * 322.07771 * 14 12 11 45 45 H 1.09000 * 111.00314 * 85.92457 * 14 12 11 46 46 H 1.08998 * 110.18644 * 265.93164 * 15 14 12 47 47 H 1.09004 * 110.18307 * 144.09603 * 15 14 12 48 48 H 0.96998 * 120.00451 * 270.25787 * 18 16 15 49 49 H 0.97004 * 119.99444 * 180.02562 * 22 21 19 50 50 H 1.09000 * 110.83993 * 273.04792 * 29 10 8 51 51 H 1.08995 * 110.84537 * 36.66311 * 29 10 8 52 52 H 1.08001 * 125.99570 * 180.11568 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7214 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.0138 -2.0189 1.3918 7 6 2.5523 -2.2543 2.6410 8 6 2.7394 -3.5700 3.2796 9 8 2.3245 -4.5747 2.7348 10 7 3.3704 -3.6589 4.4672 11 6 3.8303 -2.5132 5.3053 12 6 4.3030 -3.1391 6.5881 13 1 3.4529 -3.3483 7.2374 14 6 5.4733 -2.6658 7.4168 15 6 5.8625 -3.9712 8.1855 16 6 5.3581 -5.1514 7.3000 17 1 4.5268 -5.6652 7.7826 18 7 6.4495 -6.0896 7.0256 19 6 6.6751 -7.1434 7.8705 20 1 6.0483 -7.2831 8.7388 21 6 7.7088 -8.0325 7.6103 22 7 8.4718 -7.8631 6.5513 23 14 8.0171 -9.4696 8.7633 24 1 7.2265 -10.6434 8.3135 25 1 9.4619 -9.8122 8.7519 26 1 7.6078 -9.0956 10.1409 27 6 4.9017 -4.4895 6.0302 28 1 5.7589 -4.2792 5.3907 29 6 3.7282 -4.9244 5.1823 30 6 2.8925 -0.9986 3.1920 31 7 2.5685 -0.0772 2.3271 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 3.1301 1.4423 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 1.6765 -1.7490 -1.2493 39 1 1.6766 -0.2075 -2.1393 40 1 3.1300 -0.7218 -1.2490 41 1 1.6514 -2.7657 0.7010 42 1 4.6504 -1.9893 4.8143 43 1 3.0042 -1.8292 5.4991 44 1 6.2915 -2.3286 6.7804 45 1 5.1696 -1.8806 8.1090 46 1 5.3722 -3.9949 9.1587 47 1 6.9442 -4.0277 8.3071 48 1 7.0122 -5.9644 6.2455 49 1 9.1939 -8.4847 6.3693 50 1 2.9012 -5.2648 5.8055 51 1 4.0267 -5.6983 4.4752 52 1 3.3387 -0.8305 4.1610 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026297330.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:31 Heat of formation + Delta-G solvation = 53.211779 kcal Electronic energy + Delta-G solvation = -30704.567003 eV Core-core repulsion = 26705.746321 eV Total energy + Delta-G solvation = -3998.820682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.58744 -41.48549 -39.54181 -37.69054 -36.76550 -35.06063 -32.65610 -32.07588 -31.71994 -30.15028 -29.79432 -28.39408 -28.30318 -27.06600 -25.06169 -24.88005 -23.70812 -22.54018 -21.37974 -20.69105 -20.52518 -20.03479 -19.09706 -18.13276 -17.49091 -17.14148 -16.63409 -16.51996 -16.13881 -15.86574 -15.75282 -15.40524 -15.33793 -14.95235 -14.89451 -14.44185 -14.41800 -14.06687 -13.89122 -13.42698 -13.27266 -13.23407 -13.14110 -13.12466 -13.07554 -12.92996 -12.76026 -12.58609 -12.47444 -12.38431 -12.23591 -12.11421 -12.09668 -11.81409 -11.73347 -11.55102 -11.32071 -10.98700 -10.94437 -10.79965 -10.55650 -9.89912 -9.54641 -8.96462 -7.91799 -5.19527 0.50526 1.16667 1.30185 1.47685 1.49450 1.57417 1.89824 2.41696 2.58072 3.01292 3.30814 3.42425 3.69556 3.71804 3.74068 3.75506 3.84403 3.94660 4.01857 4.08845 4.25492 4.31755 4.33659 4.46273 4.54722 4.55701 4.57735 4.59958 4.62535 4.69491 4.70238 4.74423 4.79211 4.80377 4.81606 4.83228 4.95195 5.01350 5.07210 5.10294 5.20324 5.21857 5.24885 5.27730 5.41341 5.47124 5.51099 5.56691 5.67443 5.91300 6.30596 6.50638 6.57182 7.17272 7.36113 8.13715 8.35398 9.31805 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.002099 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.270589 B =13337.919908 C =13933.382735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.165 3.835 3 C -0.139 4.139 4 C -0.161 4.161 5 N -0.344 5.344 6 C 0.130 3.870 7 C -0.310 4.310 8 C 0.604 3.396 9 O -0.600 6.600 10 N -0.620 5.620 11 C 0.117 3.883 12 C -0.107 4.107 13 H 0.094 0.906 14 C -0.084 4.084 15 C -0.137 4.137 16 C 0.186 3.814 17 H 0.051 0.949 18 N -0.734 5.734 19 C -0.233 4.233 20 H 0.077 0.923 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.970 3.030 24 H -0.291 1.291 25 H -0.298 1.298 26 H -0.267 1.267 27 C -0.120 4.120 28 H 0.064 0.936 29 C 0.134 3.866 30 C 0.071 3.929 31 N -0.310 5.310 32 H 0.055 0.945 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.056 0.944 41 H 0.195 0.805 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.068 0.932 47 H 0.046 0.954 48 H 0.370 0.630 49 H 0.249 0.751 50 H 0.076 0.924 51 H 0.048 0.952 52 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.161 24.023 -12.013 31.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.084 3.916 3 C -0.196 4.196 4 C -0.219 4.219 5 N -0.123 5.123 6 C -0.023 4.023 7 C -0.324 4.324 8 C 0.396 3.604 9 O -0.483 6.483 10 N -0.353 5.353 11 C -0.003 4.003 12 C -0.126 4.126 13 H 0.112 0.888 14 C -0.122 4.122 15 C -0.178 4.178 16 C 0.077 3.923 17 H 0.070 0.930 18 N -0.373 5.373 19 C -0.365 4.365 20 H 0.095 0.905 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.799 3.201 24 H -0.218 1.218 25 H -0.225 1.225 26 H -0.192 1.192 27 C -0.140 4.140 28 H 0.082 0.918 29 C 0.012 3.988 30 C -0.115 4.115 31 N -0.129 5.129 32 H 0.074 0.926 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.128 0.872 40 H 0.075 0.925 41 H 0.212 0.788 42 H 0.104 0.896 43 H 0.124 0.876 44 H 0.086 0.914 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.064 0.936 48 H 0.202 0.798 49 H 0.057 0.943 50 H 0.094 0.906 51 H 0.067 0.933 52 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -17.525 24.769 -12.599 32.854 hybrid contribution 0.938 -2.479 0.437 2.687 sum -16.586 22.290 -12.162 30.329 Atomic orbital electron populations 1.22277 0.91312 1.03504 1.04337 1.21290 0.95604 0.94233 0.80460 1.21907 1.01467 0.92269 1.04002 1.22315 1.01871 1.01526 0.96167 1.49196 1.44817 1.03809 1.14478 1.23021 0.95476 0.87262 0.96581 1.20088 1.20094 0.93391 0.98875 1.17304 0.76231 0.87786 0.79122 1.90731 1.53098 1.39389 1.65080 1.49573 1.57799 1.08418 1.19508 1.21742 1.00455 0.88222 0.89924 1.22173 0.99316 0.95209 0.95901 0.88759 1.21674 0.95786 0.96670 0.98024 1.23596 1.00498 0.94648 0.99034 1.20390 0.89621 0.89551 0.92755 0.93049 1.42711 1.35844 1.29200 1.29586 1.19648 1.10458 1.02315 1.04117 0.90469 1.25546 0.99181 1.02505 0.99980 1.69828 1.22469 1.39932 1.30055 0.85182 0.76282 0.79614 0.78975 1.21828 1.22479 1.19171 1.22329 0.96591 0.98378 0.96729 0.91760 1.21374 0.96718 0.86174 0.94490 1.24998 0.97479 0.88705 1.00345 1.77119 1.18474 1.22474 0.94836 0.92581 0.87467 0.91814 0.92776 0.88053 0.92015 0.91248 0.87158 0.92452 0.78839 0.89559 0.87607 0.91436 0.88608 0.91297 0.93552 0.79774 0.94259 0.90625 0.93291 0.76580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 8.72 71.98 0.63 -0.66 16 2 C 0.16 1.84 1.23 3.61 0.00 1.85 16 3 C -0.14 -1.38 8.07 71.98 0.58 -0.80 16 4 C -0.16 -1.31 8.28 71.98 0.60 -0.71 16 5 N -0.34 -6.26 3.41 -306.12 -1.04 -7.30 16 6 C 0.13 2.75 10.39 84.28 0.88 3.63 16 7 C -0.31 -7.74 6.09 -20.15 -0.12 -7.86 16 8 C 0.60 19.13 7.86 86.67 0.68 19.81 16 9 O -0.60 -23.78 17.27 -4.01 -0.07 -23.85 16 10 N -0.62 -17.65 3.42 -818.47 -2.80 -20.45 16 11 C 0.12 2.30 4.80 85.00 0.41 2.71 16 12 C -0.11 -2.34 2.76 -10.56 -0.03 -2.37 16 13 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 14 C -0.08 -1.82 6.72 31.13 0.21 -1.61 16 15 C -0.14 -4.28 6.74 32.80 0.22 -4.05 16 16 C 0.19 7.01 3.41 45.13 0.15 7.16 16 17 H 0.05 1.97 8.09 -2.39 -0.02 1.95 16 18 N -0.73 -36.85 5.10 -322.26 -1.64 -38.49 16 19 C -0.23 -12.94 9.96 84.03 0.84 -12.10 16 20 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 21 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 22 N -0.97 -60.59 13.06 21.65 0.28 -60.31 16 23 Si 0.97 46.83 29.55 68.60 2.03 48.86 16 24 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 27 C -0.12 -3.85 2.43 -10.52 -0.03 -3.87 16 28 H 0.06 2.30 7.92 -2.39 -0.02 2.29 16 29 C 0.13 4.42 6.81 85.16 0.58 5.00 16 30 C 0.07 1.47 10.55 85.65 0.90 2.37 16 31 N -0.31 -6.52 11.56 -56.27 -0.65 -7.17 16 32 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.10 0.43 8.14 -2.39 -0.02 0.42 16 37 H 0.06 0.77 8.03 -2.39 -0.02 0.75 16 38 H 0.07 0.57 7.34 -2.39 -0.02 0.55 16 39 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.19 3.50 7.53 -2.91 -0.02 3.48 16 42 H 0.09 1.52 7.33 -2.39 -0.02 1.51 16 43 H 0.11 1.49 6.68 -2.39 -0.02 1.47 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.05 1.71 7.98 -2.38 -0.02 1.69 16 48 H 0.37 20.36 7.67 -92.71 -0.71 19.65 16 49 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 50 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 51 H 0.05 1.92 8.13 -2.39 -0.02 1.90 16 52 H 0.22 3.22 4.50 -2.91 -0.01 3.20 16 Total: -1.00 -76.70 410.08 3.27 -73.43 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.20 Total: 31.01 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 6.97 Total: 4.29 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -5.86 Total: -133.73 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.07 Total: -23.85 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -76.70 3.27 -73.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026297330.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.637 kcal (2) G-P(sol) polarization free energy of solvation -76.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds