Wall clock time and date at job start Wed Apr 1 2020 04:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47057 * 2 1 4 4 C 1.52998 * 109.47295 * 119.99676 * 2 1 3 5 5 N 1.46503 * 109.47101 * 174.99743 * 4 2 1 6 6 C 1.34255 * 125.75125 * 125.00100 * 5 4 2 7 7 C 1.38046 * 107.41518 * 179.97438 * 6 5 4 8 8 C 1.47432 * 126.41284 * 179.97438 * 7 6 5 9 9 O 1.21601 * 119.99881 * 355.12548 * 8 7 6 10 10 N 1.34774 * 119.99698 * 175.11702 * 8 7 6 11 11 C 1.49214 * 126.06068 * 5.43196 * 10 8 7 12 12 C 1.50351 * 104.86539 * 172.93535 * 11 10 8 13 13 H 1.09002 * 110.05552 * 278.93412 * 12 11 10 14 14 C 1.50997 * 125.54461 * 144.29980 * 12 11 10 15 15 C 1.56409 * 101.59722 * 204.00284 * 14 12 11 16 16 C 1.55945 * 105.78595 * 25.01263 * 15 14 12 17 17 H 1.08995 * 110.60725 * 248.81524 * 16 15 14 18 18 N 1.46501 * 110.49004 * 126.21303 * 16 15 14 19 19 C 1.36940 * 119.99987 * 90.26266 * 18 16 15 20 20 H 1.08002 * 119.99753 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99993 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99991 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00149 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47152 * 90.00349 * 23 21 19 25 25 H 1.48497 * 109.47438 * 210.00216 * 23 21 19 26 26 H 1.48497 * 109.47056 * 330.00354 * 23 21 19 27 27 C 1.50288 * 104.15634 * 7.54657 * 16 15 14 28 28 H 1.09000 * 109.99415 * 80.47204 * 27 16 15 29 29 C 1.49701 * 126.05792 * 185.11507 * 10 8 7 30 30 C 1.41290 * 107.16941 * 0.26681 * 7 6 5 31 31 N 1.30448 * 108.02648 * 359.55432 * 30 7 6 32 32 H 1.09008 * 109.46958 * 300.00280 * 1 2 3 33 33 H 1.09003 * 109.47581 * 60.00014 * 1 2 3 34 34 H 1.08994 * 109.47625 * 180.02562 * 1 2 3 35 35 H 1.08997 * 109.46893 * 240.00253 * 2 1 3 36 36 H 1.08998 * 109.46968 * 180.02562 * 3 2 1 37 37 H 1.09006 * 109.46750 * 299.99886 * 3 2 1 38 38 H 1.08996 * 109.46842 * 59.99862 * 3 2 1 39 39 H 1.09001 * 109.46619 * 55.00088 * 4 2 1 40 40 H 1.08994 * 109.47578 * 295.00362 * 4 2 1 41 41 H 1.07998 * 126.29362 * 359.95210 * 6 5 4 42 42 H 1.09001 * 110.36040 * 291.78150 * 11 10 8 43 43 H 1.09005 * 110.36335 * 54.08657 * 11 10 8 44 44 H 1.08998 * 111.00403 * 322.07693 * 14 12 11 45 45 H 1.08998 * 111.00559 * 85.92210 * 14 12 11 46 46 H 1.09006 * 110.18154 * 265.93545 * 15 14 12 47 47 H 1.08998 * 110.18382 * 144.09700 * 15 14 12 48 48 H 0.97001 * 119.99896 * 270.26815 * 18 16 15 49 49 H 0.97003 * 120.00210 * 179.97438 * 22 21 19 50 50 H 1.08997 * 110.84522 * 273.05731 * 29 10 8 51 51 H 1.08996 * 110.84379 * 36.67374 * 29 10 8 52 52 H 1.08000 * 125.98617 * 179.72941 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1905 6 6 4.3560 -0.3962 2.1312 7 6 5.6323 -0.6847 1.6915 8 6 6.8901 -0.3910 2.4023 9 8 6.8678 0.2366 3.4436 10 7 8.0647 -0.8182 1.8979 11 6 8.2617 -1.4951 0.5828 12 6 9.7529 -1.6003 0.4227 13 1 10.1578 -0.6546 0.0622 14 6 10.4873 -2.7495 -0.2255 15 6 11.8991 -2.6345 0.4377 16 6 11.6702 -1.9108 1.8000 17 1 12.1061 -0.9120 1.7818 18 7 12.2366 -2.6962 2.8994 19 6 13.5334 -2.4925 3.2893 20 1 14.1385 -1.7525 2.7865 21 6 14.0699 -3.2363 4.3313 22 7 13.3323 -4.1376 4.9443 23 14 15.8386 -2.9579 4.8636 24 1 15.8796 -1.9131 5.9181 25 1 16.3995 -4.2242 5.3995 26 1 16.6429 -2.5151 3.6965 27 6 10.1749 -1.8303 1.9267 28 1 9.7792 -2.7818 2.2819 29 6 9.4039 -0.6918 2.5550 30 6 5.5078 -1.3079 0.4296 31 7 4.2376 -1.3924 0.1446 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6766 1.9564 -0.8901 38 1 1.6766 1.9563 0.8899 39 1 1.6054 -1.7197 1.2951 40 1 1.7517 -0.1583 2.1370 41 1 4.0941 0.0870 3.0609 42 1 7.8107 -2.4873 0.5957 43 1 7.8354 -0.8943 -0.2206 44 1 10.0169 -3.7017 0.0197 45 1 10.5506 -2.6135 -1.3051 46 1 12.5645 -2.0458 -0.1938 47 1 12.3182 -3.6268 0.6046 48 1 11.6930 -3.3606 3.3511 49 1 13.7072 -4.6577 5.6723 50 1 9.8629 0.2681 2.3183 51 1 9.3213 -0.8282 3.6332 52 1 6.3215 -1.6562 -0.1893 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026388612.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:36 Heat of formation + Delta-G solvation = 68.722670 kcal Electronic energy + Delta-G solvation = -30395.505904 eV Core-core repulsion = 26397.357825 eV Total energy + Delta-G solvation = -3998.148079 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.65678 -40.28889 -38.27129 -36.87449 -35.28215 -33.38045 -32.50727 -30.90574 -30.66836 -29.33948 -28.49148 -27.70869 -26.86836 -25.36679 -23.86369 -22.99688 -21.96227 -21.60878 -20.49997 -20.05939 -19.42948 -18.95992 -17.55127 -17.04383 -16.43388 -16.20227 -15.92433 -15.38969 -14.99954 -14.81477 -14.65901 -14.55970 -14.01819 -13.91890 -13.75587 -13.47792 -13.30191 -13.06612 -12.90163 -12.75579 -12.71437 -12.51786 -12.08683 -11.84903 -11.74362 -11.56596 -11.52978 -11.48289 -11.35056 -11.12587 -10.90579 -10.76744 -10.73055 -10.41243 -10.12550 -10.08673 -9.80642 -9.77849 -9.69310 -9.51759 -8.90642 -8.88702 -8.47517 -6.94910 -5.75275 -3.04257 1.38234 2.04889 2.06701 3.01287 3.45156 3.49761 3.50396 3.51812 3.92857 4.19197 4.23699 4.38580 4.49522 4.59150 4.60137 4.72818 4.84913 4.90399 4.93445 5.04164 5.10828 5.17194 5.23356 5.29665 5.31960 5.35497 5.37611 5.42477 5.50000 5.55141 5.59623 5.64787 5.72783 5.77580 5.77887 5.90125 5.96814 6.05467 6.08287 6.16923 6.18546 6.33466 6.37814 6.42147 6.54604 6.57628 6.68261 6.81531 7.08509 7.33173 7.66770 7.72274 8.35130 8.42959 9.54286 10.11471 10.45780 11.47135 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024957 B = 0.001970 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.663779 B =14211.458710 C =14745.301216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.133 3.867 5 N -0.358 5.358 6 C 0.125 3.875 7 C -0.285 4.285 8 C 0.608 3.392 9 O -0.553 6.553 10 N -0.620 5.620 11 C 0.117 3.883 12 C -0.131 4.131 13 H 0.082 0.918 14 C -0.097 4.097 15 C -0.144 4.144 16 C 0.196 3.804 17 H 0.056 0.944 18 N -0.720 5.720 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.117 4.117 28 H 0.082 0.918 29 C 0.132 3.868 30 C 0.068 3.932 31 N -0.296 5.296 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.186 0.814 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.054 0.946 47 H 0.073 0.927 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.070 0.930 51 H 0.083 0.917 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.076 7.684 -13.372 29.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.206 4.206 4 C 0.012 3.988 5 N -0.137 5.137 6 C -0.027 4.027 7 C -0.300 4.300 8 C 0.398 3.602 9 O -0.433 6.433 10 N -0.354 5.354 11 C -0.005 4.005 12 C -0.151 4.151 13 H 0.100 0.900 14 C -0.136 4.136 15 C -0.185 4.185 16 C 0.084 3.916 17 H 0.075 0.925 18 N -0.360 5.360 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.137 4.137 28 H 0.100 0.900 29 C 0.012 3.988 30 C -0.119 4.119 31 N -0.116 5.116 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.203 0.797 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.092 0.908 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.101 0.899 52 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -26.016 7.711 -13.573 30.340 hybrid contribution 1.414 0.076 1.066 1.772 sum -24.602 7.787 -12.507 28.676 Atomic orbital electron populations 1.21791 0.93746 1.02295 1.02546 1.21426 0.96290 0.96969 0.98117 1.21842 1.01473 0.95171 1.02102 1.21988 0.74003 1.02516 1.00277 1.48543 1.06827 1.44128 1.14209 1.22935 0.89008 0.95955 0.94766 1.20224 0.93427 1.16878 0.99439 1.16851 0.81417 0.78221 0.83679 1.90773 1.86798 1.41304 1.24378 1.49565 1.06754 1.59247 1.19882 1.21513 0.96662 0.97273 0.85055 1.22201 0.93487 1.00935 0.98440 0.89957 1.21750 0.96544 0.96639 0.98626 1.23810 0.94574 1.02314 0.97757 1.20097 0.88518 0.94865 0.88085 0.92549 1.42493 1.12133 1.44412 1.36939 1.19253 0.88605 1.16661 1.12604 0.91128 1.24742 0.98186 0.98990 0.98973 1.69661 1.35818 1.26556 1.25979 0.86210 0.84727 0.76934 0.78432 1.21743 1.21852 1.20778 1.22578 0.98068 0.98861 0.94234 0.89984 1.21546 0.80833 0.98274 0.98186 1.24748 0.94700 0.97005 0.95412 1.77148 1.04362 1.20040 1.10079 0.92298 0.91811 0.92199 0.89408 0.92595 0.92170 0.92527 0.89279 0.88315 0.79728 0.90973 0.90912 0.91587 0.92162 0.92687 0.90779 0.78160 0.93525 0.91165 0.89908 0.78538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.19 37.16 0.34 -0.20 16 2 C -0.11 -0.60 3.00 -90.62 -0.27 -0.88 16 3 C -0.15 -0.91 9.08 37.16 0.34 -0.58 16 4 C 0.13 0.77 5.88 -4.04 -0.02 0.75 16 5 N -0.36 -3.32 3.10 -60.81 -0.19 -3.51 16 6 C 0.12 1.30 11.25 -16.56 -0.19 1.12 16 7 C -0.28 -3.57 6.09 -105.06 -0.64 -4.21 16 8 C 0.61 9.43 7.86 -12.52 -0.10 9.34 16 9 O -0.55 -10.45 17.27 5.28 0.09 -10.36 16 10 N -0.62 -8.88 3.42 -172.67 -0.59 -9.47 16 11 C 0.12 1.30 4.80 -3.86 -0.02 1.28 16 12 C -0.13 -1.61 2.76 -90.26 -0.25 -1.86 16 13 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.10 -1.21 6.72 -25.90 -0.17 -1.39 16 15 C -0.14 -2.33 6.74 -23.32 -0.16 -2.48 16 16 C 0.20 3.66 3.41 -67.71 -0.23 3.43 16 17 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 18 N -0.72 -17.46 5.10 -53.21 -0.27 -17.73 16 19 C -0.24 -6.53 9.96 -15.06 -0.15 -6.68 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 23 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C -0.12 -1.86 2.43 -90.21 -0.22 -2.08 16 28 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 29 C 0.13 2.11 6.81 -3.18 -0.02 2.09 16 30 C 0.07 0.75 10.55 -16.98 -0.18 0.57 16 31 N -0.30 -3.28 12.24 30.86 0.38 -2.91 16 32 H 0.06 0.18 8.14 -51.92 -0.42 -0.24 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.09 0.63 8.04 -51.93 -0.42 0.22 16 36 H 0.05 0.47 7.75 -51.93 -0.40 0.06 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.36 8.06 -51.93 -0.42 -0.05 16 41 H 0.19 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.07 0.74 7.36 -51.93 -0.38 0.36 16 43 H 0.07 0.66 6.66 -51.93 -0.35 0.31 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.07 1.38 7.98 -51.93 -0.41 0.96 16 48 H 0.38 10.04 7.67 -40.82 -0.31 9.73 16 49 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 51 H 0.08 1.50 8.13 -51.93 -0.42 1.07 16 52 H 0.20 1.74 4.50 -52.49 -0.24 1.51 16 LS Contribution 413.03 15.07 6.22 6.22 Total: -1.00 -33.53 413.03 -9.50 -43.02 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -8.80 Total: 6.99 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.04 Total: -2.26 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 0.05 Total: -60.93 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.53 -9.50 -43.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026388612.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.747 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds