Wall clock time and date at job start Wed Apr 1 2020 04:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47213 * 2 1 4 4 C 1.52999 * 109.47116 * 119.99536 * 2 1 3 5 5 N 1.46501 * 109.46928 * 65.00157 * 4 2 1 6 6 C 1.34259 * 125.75381 * 125.30718 * 5 4 2 7 7 C 1.38045 * 107.41901 * 180.11266 * 6 5 4 8 8 C 1.47429 * 126.41813 * 179.87409 * 7 6 5 9 9 O 1.21603 * 119.99948 * 6.06884 * 8 7 6 10 10 N 1.34779 * 119.99968 * 186.07142 * 8 7 6 11 11 C 1.49218 * 126.05890 * 355.75228 * 10 8 7 12 12 C 1.50316 * 104.32929 * 172.12613 * 11 10 8 13 13 H 1.09003 * 110.86025 * 279.87119 * 12 11 10 14 14 C 1.51000 * 124.69982 * 145.18995 * 12 11 10 15 15 C 1.56404 * 101.59501 * 204.34406 * 14 12 11 16 16 C 1.55932 * 105.79110 * 25.01767 * 15 14 12 17 17 H 1.09004 * 110.49406 * 126.21179 * 16 15 14 18 18 N 1.46501 * 110.61044 * 248.81965 * 16 15 14 19 19 C 1.36937 * 120.00152 * 271.66036 * 18 16 15 20 20 H 1.08011 * 119.99561 * 0.02562 * 19 18 16 21 21 C 1.38807 * 120.00413 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99697 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00224 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47354 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47282 * 120.00197 * 23 21 19 26 26 H 1.48503 * 109.47194 * 240.00089 * 23 21 19 27 27 C 1.50297 * 104.15370 * 7.54189 * 16 15 14 28 28 H 1.08999 * 109.99081 * 80.48362 * 27 16 15 29 29 C 1.49699 * 126.05761 * 175.70442 * 10 8 7 30 30 C 1.41291 * 107.16762 * 359.60727 * 7 6 5 31 31 N 1.30455 * 108.02516 * 0.24253 * 30 7 6 32 32 H 1.08998 * 109.46773 * 300.00281 * 1 2 3 33 33 H 1.09004 * 109.46618 * 59.99915 * 1 2 3 34 34 H 1.08996 * 109.46885 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.47481 * 239.99960 * 2 1 3 36 36 H 1.09000 * 109.47183 * 180.02562 * 3 2 1 37 37 H 1.09007 * 109.46794 * 300.00039 * 3 2 1 38 38 H 1.08998 * 109.46929 * 59.99623 * 3 2 1 39 39 H 1.08999 * 109.47398 * 305.00506 * 4 2 1 40 40 H 1.09004 * 109.47270 * 184.99750 * 4 2 1 41 41 H 1.08003 * 126.29568 * 359.96160 * 6 5 4 42 42 H 1.09007 * 110.35606 * 291.74297 * 11 10 8 43 43 H 1.09002 * 110.35986 * 54.05351 * 11 10 8 44 44 H 1.08999 * 111.00537 * 322.42307 * 14 12 11 45 45 H 1.09004 * 111.00152 * 86.22623 * 14 12 11 46 46 H 1.09007 * 110.18477 * 265.93698 * 15 14 12 47 47 H 1.08997 * 110.18480 * 144.10115 * 15 14 12 48 48 H 0.97001 * 120.00121 * 91.65979 * 18 16 15 49 49 H 0.97001 * 119.99592 * 180.02562 * 22 21 19 50 50 H 1.09000 * 110.83975 * 36.70790 * 29 10 8 51 51 H 1.08997 * 110.84294 * 273.09689 * 29 10 8 52 52 H 1.07999 * 125.99242 * 180.24212 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6524 -2.1327 1.1907 6 6 2.4862 -3.1801 1.2931 7 6 1.7249 -4.3265 1.1847 8 6 2.2200 -5.7142 1.2375 9 8 3.3869 -5.9338 1.4995 10 7 1.3791 -6.7393 0.9954 11 6 -0.0888 -6.6321 0.7500 12 6 -0.5007 -8.0199 0.3452 13 1 -0.2647 -8.2047 -0.7028 14 6 -1.8250 -8.6584 0.6896 15 6 -1.4690 -10.1796 0.6167 16 6 0.0649 -10.2696 0.8822 17 1 0.2711 -10.9640 1.6968 18 7 0.7752 -10.6796 -0.3317 19 6 0.9564 -12.0096 -0.6028 20 1 0.5752 -12.7563 0.0782 21 6 1.6289 -12.3982 -1.7532 22 7 2.0930 -11.4881 -2.5833 23 14 1.8754 -14.2124 -2.1234 24 1 1.2636 -15.0258 -1.0421 25 1 1.2298 -14.5456 -3.4185 26 1 3.3285 -14.5081 -2.2042 27 6 0.4531 -8.8710 1.2720 28 1 0.2079 -8.6943 2.3192 29 6 1.7526 -8.1872 0.9240 30 6 0.3815 -3.9210 1.0200 31 7 0.3500 -2.6168 1.0250 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 1.8934 -0.5138 -0.8899 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8901 38 1 1.6766 1.9563 0.8899 39 1 1.6053 -0.2617 2.1370 40 1 3.1264 -0.6443 1.2952 41 1 3.5563 -3.1342 1.4320 42 1 -0.6029 -6.3159 1.6578 43 1 -0.2875 -5.9331 -0.0625 44 1 -2.1438 -8.3795 1.6940 45 1 -2.5867 -8.3991 -0.0458 46 1 -1.7033 -10.5737 -0.3723 47 1 -2.0162 -10.7310 1.3813 48 1 1.1172 -10.0090 -0.9434 49 1 2.5626 -11.7597 -3.3874 50 1 2.5244 -8.4252 1.6560 51 1 2.0748 -8.4554 -0.0822 52 1 -0.4702 -4.5758 0.9094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026388613.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:41 Heat of formation + Delta-G solvation = 75.144429 kcal Electronic energy + Delta-G solvation = -30728.438413 eV Core-core repulsion = 26730.568802 eV Total energy + Delta-G solvation = -3997.869611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.61767 -40.29725 -38.22468 -36.76676 -35.16806 -33.29015 -32.50118 -30.85495 -30.61636 -29.20649 -28.48155 -27.50489 -26.82702 -25.38891 -23.80902 -23.21426 -21.71695 -21.62705 -20.58607 -19.82431 -19.35732 -18.77981 -17.47332 -17.40501 -16.08122 -15.96292 -15.84941 -15.43819 -15.04428 -14.68176 -14.60770 -14.32969 -14.16394 -13.90988 -13.55730 -13.50501 -13.30070 -12.89228 -12.83815 -12.79441 -12.53345 -12.47611 -12.17400 -11.96368 -11.76771 -11.46802 -11.37283 -11.26281 -11.10523 -10.93966 -10.83827 -10.73139 -10.58434 -10.43977 -10.22368 -10.03060 -9.74957 -9.65999 -9.58658 -9.46676 -8.90220 -8.84212 -8.35847 -6.94924 -5.75736 -3.04448 1.43084 2.08912 2.10848 3.10869 3.44582 3.50480 3.52593 3.58298 4.01559 4.23716 4.26711 4.46795 4.57962 4.60755 4.66186 4.83814 4.88302 4.96477 5.01171 5.09229 5.23900 5.27075 5.30355 5.36334 5.43451 5.44613 5.49607 5.54046 5.56169 5.61709 5.66116 5.71088 5.81854 5.86444 5.87309 5.97527 6.03524 6.10000 6.20120 6.31339 6.32517 6.42358 6.45079 6.53994 6.58389 6.63699 6.70749 6.87032 7.08527 7.37510 7.73094 7.76936 8.42852 8.44096 9.54222 10.11032 10.45439 11.46762 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.002170 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.573308 B =12902.298814 C =13391.718940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.133 3.867 5 N -0.360 5.360 6 C 0.124 3.876 7 C -0.282 4.282 8 C 0.607 3.393 9 O -0.554 6.554 10 N -0.620 5.620 11 C 0.116 3.884 12 C -0.130 4.130 13 H 0.092 0.908 14 C -0.097 4.097 15 C -0.145 4.145 16 C 0.194 3.806 17 H 0.055 0.945 18 N -0.718 5.718 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.120 4.120 28 H 0.076 0.924 29 C 0.133 3.867 30 C 0.067 3.933 31 N -0.294 5.294 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.186 0.814 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.052 0.948 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.077 0.923 51 H 0.085 0.915 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 24.329 8.539 26.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.127 4.127 3 C -0.204 4.204 4 C 0.012 3.988 5 N -0.139 5.139 6 C -0.028 4.028 7 C -0.297 4.297 8 C 0.397 3.603 9 O -0.434 6.434 10 N -0.354 5.354 11 C -0.006 4.006 12 C -0.149 4.149 13 H 0.110 0.890 14 C -0.135 4.135 15 C -0.186 4.186 16 C 0.082 3.918 17 H 0.073 0.927 18 N -0.359 5.359 19 C -0.369 4.369 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.140 4.140 28 H 0.094 0.906 29 C 0.013 3.987 30 C -0.120 4.120 31 N -0.114 5.114 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.203 0.797 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.096 0.904 51 H 0.103 0.897 52 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.095 25.284 8.611 27.192 hybrid contribution 0.753 -1.435 -0.511 1.699 sum -4.342 23.850 8.100 25.559 Atomic orbital electron populations 1.22093 0.93608 1.04787 1.01149 1.21397 0.97989 0.96203 0.97078 1.21798 1.01034 0.94933 1.02604 1.22005 1.00781 0.75825 1.00192 1.48552 1.05015 1.06321 1.53986 1.22946 0.97603 0.86125 0.96091 1.20243 0.93719 0.93714 1.22044 1.16847 0.84451 0.82740 0.76275 1.90769 1.17003 1.85132 1.50470 1.49586 1.08142 1.07061 1.70569 1.21563 0.81048 0.97891 1.00069 1.22288 0.97741 0.93210 1.01683 0.88981 1.21726 0.94888 0.96457 1.00414 1.23855 0.98851 0.93671 1.02231 1.20138 0.90083 0.90900 0.90630 0.92683 1.42443 1.65701 1.05140 1.22657 1.19289 1.29624 0.83774 1.04255 0.91067 1.24736 1.01200 0.97385 0.97608 1.69664 1.43137 1.31492 1.13703 0.86144 0.77418 0.85068 0.77703 1.20585 1.22005 1.21938 1.22470 0.94986 0.97412 0.99123 0.90602 1.21442 0.96775 0.77417 1.03083 1.24801 0.97557 0.92470 0.97161 1.77036 0.98366 1.11469 1.24549 0.92972 0.93072 0.89201 0.90575 0.92391 0.91828 0.92251 0.89341 0.88333 0.79686 0.91119 0.90890 0.92063 0.92070 0.90589 0.92901 0.78111 0.93572 0.90446 0.89726 0.78528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.91 37.16 0.33 -0.86 16 2 C -0.11 -0.68 3.12 -90.62 -0.28 -0.96 16 3 C -0.15 -0.65 9.19 37.16 0.34 -0.30 16 4 C 0.13 0.83 5.94 -4.04 -0.02 0.81 16 5 N -0.36 -3.50 3.65 -60.81 -0.22 -3.72 16 6 C 0.12 1.36 11.26 -16.56 -0.19 1.17 16 7 C -0.28 -3.72 6.09 -105.07 -0.64 -4.36 16 8 C 0.61 9.95 7.87 -12.52 -0.10 9.85 16 9 O -0.55 -10.96 17.22 5.28 0.09 -10.87 16 10 N -0.62 -9.54 3.43 -172.84 -0.59 -10.13 16 11 C 0.12 1.41 4.83 -3.87 -0.02 1.39 16 12 C -0.13 -1.82 2.71 -90.28 -0.24 -2.06 16 13 H 0.09 1.53 7.68 -51.93 -0.40 1.13 16 14 C -0.10 -1.24 6.70 -25.91 -0.17 -1.41 16 15 C -0.15 -2.34 6.74 -23.33 -0.16 -2.50 16 16 C 0.19 3.61 3.45 -67.71 -0.23 3.37 16 17 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 18 N -0.72 -17.00 4.84 -53.21 -0.26 -17.26 16 19 C -0.24 -6.39 9.97 -15.06 -0.15 -6.54 16 20 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 23 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 C -0.12 -1.90 2.63 -90.34 -0.24 -2.14 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 C 0.13 2.33 6.50 -3.31 -0.02 2.31 16 30 C 0.07 0.76 10.50 -16.98 -0.18 0.58 16 31 N -0.29 -3.30 9.52 30.86 0.29 -3.01 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.86 5.34 -51.93 -0.28 0.59 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.06 0.29 8.14 -51.92 -0.42 -0.14 16 38 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.39 8.06 -51.93 -0.42 -0.02 16 41 H 0.19 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.07 0.72 7.51 -51.93 -0.39 0.33 16 43 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.38 9.72 6.13 -40.82 -0.25 9.47 16 49 H 0.25 7.38 8.31 -40.82 -0.34 7.05 16 50 H 0.08 1.42 8.06 -51.93 -0.42 1.00 16 51 H 0.08 1.70 6.89 -51.93 -0.36 1.34 16 52 H 0.20 1.84 4.56 -52.49 -0.24 1.61 16 LS Contribution 405.00 15.07 6.10 6.10 Total: -1.00 -32.93 405.00 -9.49 -42.43 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -8.54 Total: 8.42 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -2.07 Total: -2.14 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -0.05 Total: -61.15 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.93 -9.49 -42.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026388613.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.570 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds