Wall clock time and date at job start Wed Apr 1 2020 04:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46503 * 2 1 4 4 C 1.52997 * 109.47303 * 120.00145 * 2 1 3 5 5 N 1.46504 * 109.46723 * 175.00225 * 4 2 1 6 6 C 1.34256 * 125.74906 * 125.27554 * 5 4 2 7 7 C 1.38044 * 107.41132 * 180.17772 * 6 5 4 8 8 C 1.47438 * 126.41397 * 179.86839 * 7 6 5 9 9 O 1.21603 * 119.99911 * 359.71856 * 8 7 6 10 10 N 1.34778 * 119.99872 * 179.71327 * 8 7 6 11 11 C 1.46901 * 125.62096 * 0.03270 * 10 8 7 12 12 C 1.54210 * 107.63552 * 178.45551 * 11 10 8 13 13 H 1.08996 * 113.72149 * 215.27709 * 12 11 10 14 14 C 1.54844 * 108.04471 * 87.00470 * 12 11 10 15 15 C 1.54134 * 104.63015 * 214.54038 * 14 12 11 16 16 C 1.53867 * 106.49271 * 24.50532 * 15 14 12 17 17 H 1.09004 * 110.09254 * 238.85765 * 16 15 14 18 18 N 1.46504 * 109.92483 * 117.64271 * 16 15 14 19 19 C 1.36943 * 119.99781 * 87.43957 * 18 16 15 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 16 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48501 * 109.46896 * 89.99850 * 23 21 19 25 25 H 1.48499 * 109.47039 * 210.00011 * 23 21 19 26 26 H 1.48501 * 109.47275 * 329.99811 * 23 21 19 27 27 C 1.53712 * 107.02964 * 358.29928 * 16 15 14 28 28 H 1.09008 * 112.96879 * 214.07941 * 27 16 15 29 29 C 1.47345 * 125.61345 * 180.02562 * 10 8 7 30 30 C 1.41287 * 107.17600 * 359.61265 * 7 6 5 31 31 N 1.30456 * 108.01915 * 0.23409 * 30 7 6 32 32 H 1.08997 * 109.47723 * 299.99104 * 1 2 3 33 33 H 1.08997 * 109.47736 * 59.99734 * 1 2 3 34 34 H 1.09002 * 109.46886 * 179.97438 * 1 2 3 35 35 H 1.08993 * 109.47005 * 240.00956 * 2 1 3 36 36 H 1.09001 * 109.46541 * 180.02562 * 3 2 1 37 37 H 1.08989 * 109.47671 * 300.00457 * 3 2 1 38 38 H 1.09001 * 109.46495 * 60.00564 * 3 2 1 39 39 H 1.08996 * 109.46939 * 55.00330 * 4 2 1 40 40 H 1.08994 * 109.47448 * 295.00249 * 4 2 1 41 41 H 1.07994 * 126.29560 * 0.03386 * 6 5 4 42 42 H 1.09007 * 109.82204 * 297.98151 * 11 10 8 43 43 H 1.09005 * 109.82276 * 58.84121 * 11 10 8 44 44 H 1.08997 * 110.40666 * 333.33075 * 14 12 11 45 45 H 1.08998 * 110.40490 * 95.64167 * 14 12 11 46 46 H 1.08992 * 110.05593 * 265.24743 * 15 14 12 47 47 H 1.08999 * 110.04899 * 143.75595 * 15 14 12 48 48 H 0.97000 * 120.00410 * 267.44282 * 18 16 15 49 49 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 50 50 H 1.08992 * 110.30117 * 85.00426 * 29 10 8 51 51 H 1.08999 * 110.29715 * 322.85909 * 29 10 8 52 52 H 1.07995 * 125.99589 * 180.23963 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1904 6 6 4.3557 -0.4008 2.1335 7 6 5.6323 -0.6831 1.6907 8 6 6.8902 -0.3895 2.4015 9 8 6.8617 0.1585 3.4867 10 7 8.0717 -0.7285 1.8486 11 6 8.2497 -1.3912 0.5497 12 6 9.7648 -1.5464 0.3081 13 1 10.0558 -1.4361 -0.7365 14 6 10.2220 -2.8717 0.9654 15 6 11.6454 -2.5804 1.4798 16 6 11.7314 -1.0584 1.6888 17 1 12.5317 -0.6411 1.0776 18 7 11.9768 -0.7617 3.1024 19 6 13.2596 -0.7141 3.5793 20 1 14.0903 -0.8958 2.9135 21 6 13.4918 -0.4386 4.9199 22 7 12.4794 -0.2178 5.7314 23 14 15.2413 -0.3814 5.5721 24 1 15.7690 1.0016 5.4527 25 1 15.2514 -0.7937 6.9987 26 1 16.0942 -1.3065 4.7834 27 6 10.3798 -0.4676 1.2567 28 1 10.4725 0.5190 0.8025 29 6 9.3976 -0.4955 2.4475 30 6 5.5077 -1.3114 0.4313 31 7 4.2377 -1.3913 0.1441 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5137 -0.8900 36 1 3.1298 1.4426 -0.0005 37 1 1.6765 1.9565 -0.8898 38 1 1.6765 1.9563 0.8901 39 1 1.6054 -1.7198 1.2950 40 1 1.7517 -0.1584 2.1369 41 1 4.0935 0.0767 3.0660 42 1 7.7757 -2.3726 0.5674 43 1 7.8087 -0.7821 -0.2395 44 1 9.5640 -3.1315 1.7946 45 1 10.2392 -3.6751 0.2289 46 1 12.3819 -2.8985 0.7420 47 1 11.8145 -3.0974 2.4244 48 1 11.2306 -0.5989 3.7005 49 1 12.6417 -0.0249 6.6680 50 1 9.6525 -1.3067 3.1292 51 1 9.4128 0.4596 2.9725 52 1 6.3212 -1.6638 -0.1854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026388614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:46 Heat of formation + Delta-G solvation = 59.406062 kcal Electronic energy + Delta-G solvation = -30844.318303 eV Core-core repulsion = 26845.766225 eV Total energy + Delta-G solvation = -3998.552078 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.61173 -40.18745 -38.09912 -36.83105 -35.07274 -33.23473 -32.41234 -30.93505 -30.53584 -29.08923 -28.42867 -27.67181 -26.89964 -25.32615 -24.04494 -23.18808 -21.85892 -21.65133 -20.36844 -19.63996 -19.33085 -18.79039 -17.56182 -17.15863 -16.48447 -16.11995 -15.63165 -15.30155 -15.02537 -14.80975 -14.76760 -14.51586 -13.95656 -13.82876 -13.42696 -13.35596 -13.13124 -13.02331 -12.83181 -12.78113 -12.55737 -12.33008 -12.25692 -12.08554 -11.71945 -11.52610 -11.52460 -11.42368 -11.22199 -11.01675 -10.77234 -10.62181 -10.47099 -10.40152 -10.22245 -10.09487 -9.82854 -9.73808 -9.57117 -9.54290 -8.86106 -8.82201 -8.28009 -6.91367 -5.71352 -3.01034 1.44468 2.10713 2.11965 3.25492 3.46764 3.51648 3.53689 3.60364 3.98109 4.27370 4.42673 4.51215 4.55571 4.63024 4.64734 4.75499 4.82226 4.93258 4.96022 5.06570 5.13840 5.15258 5.28225 5.35813 5.39463 5.41701 5.46113 5.48135 5.57124 5.58313 5.65777 5.66817 5.76597 5.81284 5.82558 5.94033 6.00419 6.05529 6.12232 6.25097 6.33820 6.44422 6.57907 6.58124 6.62716 6.64909 6.73583 6.84702 7.15062 7.38057 7.75255 7.82642 8.46383 8.49697 9.57576 10.15290 10.48571 11.50817 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022064 B = 0.002181 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.733558 B =12835.387281 C =13661.853954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.133 3.867 5 N -0.359 5.359 6 C 0.124 3.876 7 C -0.283 4.283 8 C 0.604 3.396 9 O -0.547 6.547 10 N -0.610 5.610 11 C 0.101 3.899 12 C -0.103 4.103 13 H 0.103 0.897 14 C -0.115 4.115 15 C -0.145 4.145 16 C 0.183 3.817 17 H 0.054 0.946 18 N -0.725 5.725 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.105 4.105 28 H 0.088 0.912 29 C 0.119 3.881 30 C 0.067 3.933 31 N -0.298 5.298 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.186 0.814 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.073 0.927 48 H 0.387 0.613 49 H 0.255 0.745 50 H 0.082 0.918 51 H 0.080 0.920 52 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.974 -2.141 -15.448 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.206 4.206 4 C 0.012 3.988 5 N -0.138 5.138 6 C -0.027 4.027 7 C -0.298 4.298 8 C 0.393 3.607 9 O -0.426 6.426 10 N -0.343 5.343 11 C -0.022 4.022 12 C -0.122 4.122 13 H 0.121 0.879 14 C -0.153 4.153 15 C -0.186 4.186 16 C 0.072 3.928 17 H 0.072 0.928 18 N -0.368 5.368 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.125 4.125 28 H 0.106 0.894 29 C -0.003 4.003 30 C -0.120 4.120 31 N -0.118 5.118 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.203 0.797 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.092 0.908 48 H 0.223 0.777 49 H 0.065 0.935 50 H 0.100 0.900 51 H 0.099 0.901 52 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -23.907 -2.204 -15.608 28.636 hybrid contribution 1.352 0.288 1.241 1.857 sum -22.555 -1.916 -14.367 26.811 Atomic orbital electron populations 1.21789 0.93779 1.02253 1.02547 1.21421 0.96255 0.96995 0.98106 1.21842 1.01522 0.95143 1.02101 1.21977 0.74049 1.02447 1.00283 1.48527 1.06796 1.44389 1.14064 1.22946 0.89005 0.96035 0.94711 1.20251 0.93487 1.16712 0.99316 1.16857 0.81418 0.78132 0.84286 1.90805 1.86824 1.43849 1.21082 1.48236 1.06070 1.59537 1.20454 1.22301 0.97458 0.96810 0.85663 1.23178 0.92569 0.96727 0.99741 0.87906 1.22403 0.98146 0.95451 0.99269 1.22970 0.94555 1.00046 1.01018 1.20675 0.92743 0.91655 0.87763 0.92823 1.42723 1.06112 1.84351 1.03639 1.19239 0.84736 1.40514 0.92739 0.91188 1.24755 0.97102 1.02687 0.96384 1.69660 1.28968 1.54663 1.04511 0.86219 0.84434 0.77583 0.78098 1.21796 1.21869 1.20830 1.23229 0.96064 0.98425 0.94822 0.89402 1.22170 0.79174 1.03058 0.95853 1.24776 0.94682 0.97127 0.95443 1.77129 1.04377 1.20126 1.10145 0.92285 0.91831 0.92235 0.89440 0.92559 0.92186 0.92511 0.89350 0.88319 0.79693 0.91275 0.91604 0.91716 0.92366 0.93043 0.90802 0.77693 0.93460 0.90032 0.90127 0.78502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.19 37.16 0.34 -0.25 16 2 C -0.11 -0.65 3.00 -90.62 -0.27 -0.92 16 3 C -0.15 -0.99 9.08 37.16 0.34 -0.66 16 4 C 0.13 0.83 5.88 -4.04 -0.02 0.81 16 5 N -0.36 -3.51 3.10 -60.81 -0.19 -3.70 16 6 C 0.12 1.39 11.25 -16.56 -0.19 1.21 16 7 C -0.28 -3.77 6.09 -105.06 -0.64 -4.41 16 8 C 0.60 10.16 7.84 -12.51 -0.10 10.06 16 9 O -0.55 -11.37 17.15 5.27 0.09 -11.28 16 10 N -0.61 -9.50 3.32 -172.34 -0.57 -10.07 16 11 C 0.10 1.17 4.22 -3.19 -0.01 1.15 16 12 C -0.10 -1.25 4.25 -87.27 -0.37 -1.62 16 13 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.11 -1.55 5.58 -25.17 -0.14 -1.69 16 15 C -0.15 -2.45 6.57 -25.69 -0.17 -2.61 16 16 C 0.18 3.46 3.24 -67.11 -0.22 3.25 16 17 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 18 N -0.73 -17.80 4.79 -52.62 -0.25 -18.05 16 19 C -0.24 -6.62 9.95 -15.06 -0.15 -6.77 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 23 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C -0.11 -1.68 4.03 -87.78 -0.35 -2.03 16 28 H 0.09 1.35 8.14 -51.92 -0.42 0.93 16 29 C 0.12 2.17 4.41 -2.85 -0.01 2.15 16 30 C 0.07 0.76 10.44 -16.98 -0.18 0.58 16 31 N -0.30 -3.41 12.24 30.86 0.38 -3.03 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.09 0.66 8.04 -51.93 -0.42 0.24 16 36 H 0.06 0.50 7.75 -51.93 -0.40 0.10 16 37 H 0.06 0.37 8.14 -51.94 -0.42 -0.05 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.42 8.06 -51.93 -0.42 0.00 16 41 H 0.19 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.07 0.71 6.71 -51.92 -0.35 0.36 16 43 H 0.07 0.64 6.78 -51.93 -0.35 0.29 16 44 H 0.06 0.95 7.27 -51.93 -0.38 0.58 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 1.46 7.91 -51.93 -0.41 1.05 16 48 H 0.39 10.16 5.33 -40.82 -0.22 9.94 16 49 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 50 H 0.08 1.68 6.28 -51.93 -0.33 1.35 16 51 H 0.08 1.68 8.02 -51.93 -0.42 1.26 16 52 H 0.20 1.81 4.47 -52.49 -0.23 1.57 16 LS Contribution 405.38 15.07 6.11 6.11 Total: -1.00 -34.33 405.38 -9.51 -43.84 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.54 Total: 8.61 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.24 Total: -2.23 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.09 Total: -62.58 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.33 -9.51 -43.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026388614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.250 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds