Wall clock time and date at job start Wed Apr 1 2020 04:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46934 * 2 1 4 4 C 1.53006 * 109.46905 * 119.99956 * 2 1 3 5 5 N 1.46502 * 109.46924 * 175.00583 * 4 2 1 6 6 C 1.34259 * 125.75700 * 125.00375 * 5 4 2 7 7 C 1.38034 * 107.41680 * 179.97438 * 6 5 4 8 8 C 1.47433 * 126.41426 * 179.97438 * 7 6 5 9 9 O 1.21607 * 120.00041 * 352.56897 * 8 7 6 10 10 N 1.34774 * 120.00076 * 172.56508 * 8 7 6 11 11 C 1.47215 * 126.70284 * 173.81600 * 10 8 7 12 12 C 1.53774 * 106.37921 * 148.74318 * 11 10 8 13 13 H 1.09002 * 111.71401 * 257.23502 * 12 11 10 14 14 C 1.54328 * 109.06323 * 132.42931 * 12 11 10 15 15 C 1.55055 * 103.93664 * 222.03388 * 14 12 11 16 16 C 1.55057 * 102.10998 * 40.05284 * 15 14 12 17 17 H 1.09001 * 110.53194 * 78.55877 * 16 15 14 18 18 N 1.46500 * 110.65773 * 201.26851 * 16 15 14 19 19 C 1.36934 * 120.00322 * 271.55919 * 18 16 15 20 20 H 1.08006 * 120.00031 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00049 * 180.02562 * 19 18 16 22 22 N 1.31621 * 120.00091 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99991 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47282 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47413 * 119.99730 * 23 21 19 26 26 H 1.48500 * 109.47007 * 239.99709 * 23 21 19 27 27 C 1.54317 * 103.93835 * 319.94573 * 16 15 14 28 28 H 1.09000 * 111.69007 * 261.92077 * 27 16 15 29 29 C 1.47219 * 126.70313 * 353.84647 * 10 8 7 30 30 C 1.41290 * 107.17597 * 0.24197 * 7 6 5 31 31 N 1.30452 * 108.01633 * 359.58643 * 30 7 6 32 32 H 1.08997 * 109.47643 * 299.99835 * 1 2 3 33 33 H 1.09007 * 109.47108 * 60.00239 * 1 2 3 34 34 H 1.08999 * 109.47070 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.47795 * 239.99636 * 2 1 3 36 36 H 1.09003 * 109.46928 * 179.97438 * 3 2 1 37 37 H 1.08994 * 109.47287 * 299.99614 * 3 2 1 38 38 H 1.09002 * 109.47130 * 60.00017 * 3 2 1 39 39 H 1.08996 * 109.47330 * 54.99817 * 4 2 1 40 40 H 1.09004 * 109.46966 * 295.00256 * 4 2 1 41 41 H 1.07998 * 126.28646 * 0.02562 * 6 5 4 42 42 H 1.08996 * 110.07728 * 267.97819 * 11 10 8 43 43 H 1.09001 * 110.06876 * 29.51632 * 11 10 8 44 44 H 1.09002 * 110.52730 * 340.64158 * 14 12 11 45 45 H 1.08994 * 110.53614 * 103.42217 * 14 12 11 46 46 H 1.08997 * 110.90305 * 281.85558 * 15 14 12 47 47 H 1.08998 * 110.90388 * 158.25745 * 15 14 12 48 48 H 0.96999 * 119.99586 * 91.54845 * 18 16 15 49 49 H 0.96997 * 119.99599 * 180.02562 * 22 21 19 50 50 H 1.08997 * 110.07134 * 92.02497 * 29 10 8 51 51 H 1.09000 * 110.07224 * 330.48838 * 29 10 8 52 52 H 1.07998 * 125.99458 * 179.73602 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.3559 -0.3963 2.1315 7 6 5.6322 -0.6846 1.6918 8 6 6.8900 -0.3909 2.4027 9 8 6.8724 0.2762 3.4193 10 7 8.0593 -0.8617 1.9258 11 6 9.4052 -0.5568 2.4384 12 6 10.2608 -1.8086 2.1821 13 1 10.4056 -2.3913 3.0918 14 6 11.5974 -1.3825 1.5389 15 6 11.8336 -2.4420 0.4317 16 6 10.4070 -2.6333 -0.1450 17 1 10.1537 -1.8141 -0.8180 18 7 10.2982 -3.9189 -0.8390 19 6 10.6177 -4.0091 -2.1675 20 1 10.9495 -3.1324 -2.7039 21 6 10.5141 -5.2272 -2.8251 22 7 10.1092 -6.2956 -2.1716 23 14 10.9492 -5.3500 -4.6376 24 1 11.3729 -4.0171 -5.1364 25 1 12.0584 -6.3212 -4.8157 26 1 9.7616 -5.8095 -5.4017 27 6 9.4965 -2.6118 1.1007 28 1 9.2422 -3.6188 1.4313 29 6 8.2402 -1.7810 0.7902 30 6 5.5079 -1.3082 0.4301 31 7 4.2377 -1.3923 0.1450 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5139 -0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6766 1.9564 0.8900 39 1 1.6053 -1.7198 1.2953 40 1 1.7515 -0.1583 2.1370 41 1 4.0938 0.0857 3.0617 42 1 9.8235 0.2977 1.9065 43 1 9.3598 -0.3471 3.5071 44 1 11.5118 -0.3870 1.1034 45 1 12.4018 -1.4117 2.2738 46 1 12.2088 -3.3726 0.8576 47 1 12.5138 -2.0627 -0.3308 48 1 10.0000 -4.7063 -0.3573 49 1 10.0372 -7.1467 -2.6311 50 1 8.3840 -1.2149 -0.1300 51 1 7.3731 -2.4347 0.6963 52 1 6.3216 -1.6565 -0.1887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026388615.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:50 Heat of formation + Delta-G solvation = 51.381181 kcal Electronic energy + Delta-G solvation = -30768.963696 eV Core-core repulsion = 26770.063634 eV Total energy + Delta-G solvation = -3998.900063 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.56559 -40.05428 -38.15761 -36.78186 -35.11680 -33.48220 -32.37125 -31.09504 -30.40467 -29.29661 -28.60815 -27.61290 -26.74247 -25.09119 -24.10918 -22.91683 -21.83871 -21.61131 -20.33216 -20.22591 -19.21836 -19.04025 -17.45995 -17.13803 -16.50819 -15.95445 -15.72242 -15.49673 -15.03191 -14.91576 -14.71001 -14.24509 -14.11526 -13.78554 -13.67470 -13.30118 -13.22701 -13.00012 -12.80581 -12.77090 -12.53392 -12.48861 -12.14229 -11.88246 -11.67073 -11.63343 -11.46100 -11.37116 -11.15745 -10.95296 -10.79155 -10.71437 -10.63840 -10.32327 -10.24484 -10.17788 -9.94472 -9.74848 -9.66615 -9.61637 -8.88779 -8.82960 -8.45643 -6.95577 -5.78043 -3.06644 1.45125 2.14571 2.18919 3.15527 3.42783 3.48902 3.50533 3.50800 4.03663 4.33437 4.47886 4.52237 4.58550 4.64762 4.71076 4.75842 4.86667 4.97642 5.03361 5.06450 5.15022 5.19942 5.32942 5.35014 5.40942 5.45474 5.48184 5.51074 5.57786 5.62178 5.65407 5.71275 5.77669 5.83153 5.88169 5.90653 5.99945 6.02691 6.11469 6.16317 6.26795 6.33000 6.39385 6.50651 6.55373 6.67627 6.69241 6.80672 7.04860 7.46439 7.70143 7.70733 8.33702 8.40518 9.52005 10.09354 10.43391 11.44475 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009299 B = 0.002872 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.445462 B = 9747.982877 C =12212.933889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.148 4.148 4 C 0.133 3.867 5 N -0.359 5.359 6 C 0.124 3.876 7 C -0.289 4.289 8 C 0.613 3.387 9 O -0.561 6.561 10 N -0.613 5.613 11 C 0.114 3.886 12 C -0.099 4.099 13 H 0.085 0.915 14 C -0.116 4.116 15 C -0.143 4.143 16 C 0.184 3.816 17 H 0.057 0.943 18 N -0.721 5.721 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.904 3.096 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.106 4.106 28 H 0.090 0.910 29 C 0.099 3.901 30 C 0.074 3.926 31 N -0.292 5.292 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.185 0.815 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.075 0.925 51 H 0.083 0.917 52 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.519 14.170 9.682 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.205 4.205 4 C 0.013 3.987 5 N -0.137 5.137 6 C -0.028 4.028 7 C -0.303 4.303 8 C 0.404 3.596 9 O -0.441 6.441 10 N -0.345 5.345 11 C -0.009 4.009 12 C -0.119 4.119 13 H 0.103 0.897 14 C -0.154 4.154 15 C -0.184 4.184 16 C 0.073 3.927 17 H 0.075 0.925 18 N -0.361 5.361 19 C -0.369 4.369 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.735 3.265 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.126 4.126 28 H 0.109 0.891 29 C -0.023 4.023 30 C -0.113 4.113 31 N -0.111 5.111 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.201 0.799 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.093 0.907 51 H 0.101 0.899 52 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -15.635 14.192 9.186 23.027 hybrid contribution 0.814 -0.282 -0.295 0.911 sum -14.821 13.910 8.891 22.185 Atomic orbital electron populations 1.21787 0.93780 1.02303 1.02458 1.21433 0.96260 0.96965 0.98246 1.21837 1.01512 0.95186 1.02006 1.21977 0.74053 1.02518 1.00189 1.48592 1.06848 1.44005 1.14278 1.22880 0.89014 0.96127 0.94765 1.20157 0.93276 1.17374 0.99538 1.16836 0.81393 0.78473 0.82911 1.90738 1.86770 1.41572 1.25020 1.48332 1.05470 1.47351 1.33323 1.22185 0.81309 0.97311 1.00089 1.22553 0.95296 0.95315 0.98687 0.89686 1.22488 0.95437 0.99333 0.98180 1.23292 1.00508 0.97762 0.96802 1.21250 0.91113 0.90279 0.90089 0.92479 1.42453 1.79788 1.05337 1.08484 1.19265 1.37015 0.94518 0.86118 0.91136 1.24728 1.02272 0.95808 0.98045 1.69665 1.53333 0.99571 1.35421 0.86164 0.77575 0.77373 0.85358 1.20556 1.21949 1.21902 1.22910 0.94254 0.98820 0.96666 0.89136 1.22637 0.99203 0.91623 0.88858 1.24806 0.94787 0.96364 0.95361 1.77236 1.04438 1.19783 1.09639 0.92381 0.91818 0.92179 0.89258 0.92569 0.92157 0.92637 0.89249 0.88421 0.79850 0.91361 0.90667 0.91648 0.92208 0.91568 0.92176 0.78188 0.93573 0.90670 0.89871 0.78207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.19 37.16 0.34 -0.38 16 2 C -0.11 -0.77 3.00 -90.62 -0.27 -1.04 16 3 C -0.15 -1.09 9.08 37.16 0.34 -0.75 16 4 C 0.13 0.94 5.88 -4.04 -0.02 0.91 16 5 N -0.36 -3.83 3.10 -60.81 -0.19 -4.02 16 6 C 0.12 1.39 11.26 -16.57 -0.19 1.20 16 7 C -0.29 -3.92 6.04 -105.07 -0.63 -4.56 16 8 C 0.61 9.45 7.86 -12.52 -0.10 9.35 16 9 O -0.56 -9.99 17.11 5.27 0.09 -9.90 16 10 N -0.61 -8.76 3.32 -172.85 -0.57 -9.33 16 11 C 0.11 1.49 6.57 -3.25 -0.02 1.47 16 12 C -0.10 -1.30 3.91 -88.53 -0.35 -1.64 16 13 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 14 C -0.12 -1.49 6.35 -24.95 -0.16 -1.65 16 15 C -0.14 -2.35 6.60 -24.56 -0.16 -2.51 16 16 C 0.18 3.32 3.02 -66.15 -0.20 3.12 16 17 H 0.06 1.05 7.15 -51.93 -0.37 0.68 16 18 N -0.72 -16.86 5.23 -51.71 -0.27 -17.14 16 19 C -0.24 -6.29 9.97 -15.06 -0.15 -6.44 16 20 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 23 Si 0.90 21.93 29.55 -169.99 -5.02 16.90 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 C -0.11 -1.62 3.60 -88.54 -0.32 -1.94 16 28 H 0.09 1.48 7.79 -51.93 -0.40 1.08 16 29 C 0.10 1.40 4.87 -3.25 -0.02 1.38 16 30 C 0.07 1.00 10.27 -16.98 -0.17 0.83 16 31 N -0.29 -3.93 12.24 30.86 0.38 -3.55 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 0.81 8.04 -51.93 -0.42 0.39 16 36 H 0.06 0.54 7.75 -51.93 -0.40 0.14 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.44 8.06 -51.93 -0.42 0.02 16 41 H 0.18 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.07 0.84 7.13 -51.93 -0.37 0.47 16 43 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 44 H 0.06 0.79 7.19 -51.93 -0.37 0.41 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.38 9.66 7.59 -40.82 -0.31 9.35 16 49 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 50 H 0.08 1.05 6.99 -51.93 -0.36 0.68 16 51 H 0.08 1.17 5.43 -51.93 -0.28 0.89 16 52 H 0.20 2.59 5.06 -52.49 -0.27 2.32 16 LS Contribution 409.55 15.07 6.17 6.17 Total: -1.00 -32.43 409.55 -9.45 -41.88 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.58 Total: 8.74 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.18 Total: -3.09 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.07 Total: -60.71 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.43 -9.45 -41.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026388615.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.261 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds