Wall clock time and date at job start Wed Apr 1 2020 03:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46844 * 2 1 4 4 C 1.52993 * 109.47376 * 185.59731 * 3 2 1 5 5 C 1.52995 * 109.47033 * 65.13920 * 4 3 2 6 6 N 1.46503 * 109.47087 * 65.59245 * 3 2 1 7 7 N 1.28439 * 125.18680 * 63.98031 * 6 3 2 8 8 C 1.30865 * 110.92674 * 180.02562 * 7 6 3 9 9 C 1.39677 * 107.86109 * 359.97438 * 8 7 6 10 10 C 1.36599 * 125.19376 * 243.67391 * 6 3 2 11 11 C 1.47165 * 126.88311 * 359.97438 * 10 6 3 12 12 O 1.21627 * 120.00243 * 26.38811 * 11 10 6 13 13 N 1.34771 * 119.99922 * 206.39974 * 11 10 6 14 14 C 1.47169 * 120.70974 * 187.36001 * 13 11 10 15 15 C 1.53888 * 108.03086 * 132.75255 * 14 13 11 16 16 H 1.09000 * 112.09677 * 181.90976 * 15 14 13 17 17 C 1.54548 * 107.82984 * 306.50648 * 15 14 13 18 18 C 1.54282 * 104.85196 * 89.07356 * 17 15 14 19 19 C 1.54543 * 104.84710 * 359.97438 * 18 17 15 20 20 H 1.09001 * 112.18379 * 146.41042 * 19 18 17 21 21 C 1.47164 * 120.71355 * 7.07441 * 13 11 10 22 22 N 1.48308 * 107.20692 * 58.36221 * 15 14 13 23 23 C 1.36937 * 128.07975 * 106.70464 * 22 15 14 24 24 H 1.08006 * 119.99677 * 15.95616 * 23 22 15 25 25 C 1.38809 * 120.00219 * 195.96031 * 23 22 15 26 26 N 1.31611 * 119.99970 * 7.20564 * 25 23 22 27 27 Si 1.86802 * 119.99987 * 187.21190 * 25 23 22 28 28 H 1.48499 * 109.47295 * 89.99548 * 27 25 23 29 29 H 1.48502 * 109.47071 * 209.99912 * 27 25 23 30 30 H 1.48508 * 109.46783 * 329.99777 * 27 25 23 31 31 H 1.09000 * 109.46441 * 175.09641 * 1 2 3 32 32 H 1.08990 * 109.47486 * 295.09186 * 1 2 3 33 33 H 1.08996 * 109.47086 * 55.09950 * 1 2 3 34 34 H 1.08997 * 109.47169 * 119.99402 * 2 1 3 35 35 H 1.08997 * 109.47383 * 240.00644 * 2 1 3 36 36 H 1.09002 * 109.46748 * 305.60310 * 3 2 1 37 37 H 1.08999 * 109.47176 * 185.14320 * 4 3 2 38 38 H 1.09003 * 109.46934 * 305.13902 * 4 3 2 39 39 H 1.08998 * 109.47532 * 302.33019 * 5 4 3 40 40 H 1.09004 * 109.47381 * 62.33461 * 5 4 3 41 41 H 1.09003 * 109.46964 * 182.32912 * 5 4 3 42 42 H 1.07997 * 126.06866 * 179.97438 * 8 7 6 43 43 H 1.08003 * 127.31612 * 179.97438 * 9 8 7 44 44 H 1.08994 * 109.74719 * 252.38303 * 14 13 11 45 45 H 1.09001 * 109.74542 * 13.06880 * 14 13 11 46 46 H 1.08998 * 110.36293 * 207.91828 * 17 15 14 47 47 H 1.09006 * 110.36394 * 330.22901 * 17 15 14 48 48 H 1.08997 * 110.35870 * 241.15327 * 18 17 15 49 49 H 1.08998 * 110.36204 * 118.83793 * 18 17 15 50 50 H 1.09005 * 109.74454 * 346.88112 * 21 13 11 51 51 H 1.09001 * 109.75144 * 107.61072 * 21 13 11 52 52 H 0.97004 * 120.00151 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5634 1.4450 -0.1407 5 6 3.9500 0.8823 -1.5099 6 7 1.6646 2.0932 1.2578 7 7 2.0804 1.7474 2.4228 8 6 1.5691 2.5175 3.3492 9 6 0.7428 3.4523 2.7212 10 6 0.8237 3.1639 1.3700 11 6 0.1384 3.8674 0.2740 12 8 -0.1129 3.2814 -0.7617 13 7 -0.2105 5.1612 0.4179 14 6 -1.0356 5.8346 -0.5978 15 6 -2.1600 6.5936 0.1287 16 1 -2.8343 7.0922 -0.5675 17 6 -2.8898 5.5901 1.0500 18 6 -2.1211 5.6488 2.3864 19 6 -0.9962 6.6820 2.1510 20 1 -0.7633 7.2494 3.0521 21 6 0.2202 5.9292 1.5971 22 7 -1.5134 7.5471 1.0627 23 6 -1.4163 8.9081 0.9471 24 1 -2.0484 9.4372 0.2492 25 6 -0.5056 9.6077 1.7267 26 7 0.3612 8.9549 2.4715 27 14 -0.5103 11.4757 1.7190 28 1 -1.4230 11.9728 2.7796 29 1 0.8646 11.9752 1.9749 30 1 -0.9762 11.9640 0.3961 31 1 -0.3632 -1.0239 -0.0878 32 1 -0.3634 0.4358 0.9306 33 1 -0.3633 0.5880 -0.8428 34 1 1.8934 -0.5137 0.8900 35 1 1.8934 -0.5137 -0.8900 36 1 1.5970 1.9845 -0.8356 37 1 3.9351 2.4656 -0.0491 38 1 4.0017 0.8271 0.6431 39 1 3.5430 -0.1231 -1.6176 40 1 3.5465 1.5236 -2.2935 41 1 5.0362 0.8454 -1.5940 42 1 1.7533 2.4434 4.4107 43 1 0.1663 4.2361 3.1901 44 1 -0.4231 6.5366 -1.1635 45 1 -1.4659 5.0945 -1.2724 46 1 -3.9266 5.8933 1.1952 47 1 -2.8429 4.5856 0.6293 48 1 -1.6963 4.6732 2.6227 49 1 -2.7799 5.9811 3.1886 50 1 0.6094 5.2507 2.3564 51 1 0.9921 6.6432 1.3099 52 1 0.9975 9.4438 3.0167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029338578.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:38 Heat of formation + Delta-G solvation = 88.129992 kcal Electronic energy + Delta-G solvation = -33137.311151 eV Core-core repulsion = 29140.004636 eV Total energy + Delta-G solvation = -3997.306515 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.47654 -39.89930 -37.77196 -36.94425 -33.87306 -32.55215 -31.97637 -31.50754 -31.10971 -29.87873 -29.28293 -26.61013 -26.20562 -24.16872 -23.83447 -22.99799 -22.25890 -22.18518 -20.64544 -19.71543 -19.14125 -18.67519 -17.50103 -16.43941 -16.13599 -15.71177 -15.44069 -15.16624 -14.89729 -14.61537 -14.49628 -14.15007 -13.82237 -13.72173 -13.63120 -13.29909 -13.02040 -12.74720 -12.61141 -12.51368 -12.26358 -12.09377 -11.80690 -11.76719 -11.64409 -11.56454 -11.17295 -11.07969 -10.99157 -10.91578 -10.82247 -10.73977 -10.42254 -10.36081 -10.02290 -9.88342 -9.62777 -9.60746 -9.56292 -8.97725 -8.89239 -8.60197 -8.08546 -6.88138 -5.88793 -3.24544 1.58630 2.49916 2.82085 3.32982 3.39335 3.40447 3.47005 3.56183 4.34348 4.38213 4.64479 4.78188 4.86366 4.99491 5.06175 5.13079 5.18454 5.22601 5.29157 5.36866 5.49642 5.56006 5.61602 5.63680 5.68472 5.74144 5.75447 5.77042 5.86148 5.88845 5.93921 5.98475 6.00615 6.03269 6.07848 6.12963 6.27600 6.29461 6.35923 6.51095 6.58483 6.59398 6.69350 6.74595 6.85112 6.93711 6.96057 7.23760 7.42467 7.61769 7.94738 8.09695 8.26795 8.52056 9.01605 9.63246 10.39829 11.24212 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.003377 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.926230 B = 8289.129243 C = 8520.473447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.143 3.857 4 C -0.131 4.131 5 C -0.151 4.151 6 N -0.251 5.251 7 N -0.284 5.284 8 C -0.008 4.008 9 C -0.199 4.199 10 C -0.022 4.022 11 C 0.579 3.421 12 O -0.563 6.563 13 N -0.570 5.570 14 C 0.105 3.895 15 C 0.133 3.867 16 H 0.080 0.920 17 C -0.124 4.124 18 C -0.140 4.140 19 C 0.168 3.832 20 H 0.122 0.878 21 C 0.069 3.931 22 N -0.584 5.584 23 C -0.226 4.226 24 H 0.076 0.924 25 C -0.002 4.002 26 N -0.915 5.915 27 Si 0.912 3.088 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.183 0.817 43 H 0.176 0.824 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.094 0.906 51 H 0.082 0.918 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 -15.001 -1.968 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C 0.042 3.958 4 C -0.169 4.169 5 C -0.208 4.208 6 N -0.039 5.039 7 N -0.116 5.116 8 C -0.184 4.184 9 C -0.227 4.227 10 C -0.151 4.151 11 C 0.365 3.635 12 O -0.444 6.444 13 N -0.300 5.300 14 C -0.020 4.020 15 C 0.025 3.975 16 H 0.098 0.902 17 C -0.163 4.163 18 C -0.180 4.180 19 C 0.061 3.939 20 H 0.139 0.861 21 C -0.053 4.053 22 N -0.305 5.305 23 C -0.354 4.354 24 H 0.094 0.906 25 C -0.199 4.199 26 N -0.561 5.561 27 Si 0.743 3.257 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.143 0.857 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.200 0.800 43 H 0.192 0.808 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.112 0.888 51 H 0.100 0.900 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.197 -15.986 -2.728 16.530 hybrid contribution -0.390 1.802 0.295 1.867 sum 2.807 -14.184 -2.433 14.663 Atomic orbital electron populations 1.21746 0.94804 1.01437 1.02872 1.21900 0.97159 0.94261 1.03292 1.22002 0.96400 0.95046 0.82337 1.21833 0.93410 1.02647 0.99033 1.21799 1.01687 1.01293 0.96047 1.45794 1.31025 1.21109 1.05989 1.73048 1.22701 1.25251 0.90560 1.23545 0.99980 0.95601 0.99257 1.22639 1.05333 1.03168 0.91597 1.21491 1.02348 0.95221 0.96013 1.16989 0.79320 0.82003 0.85148 1.90691 1.57739 1.67051 1.28920 1.47930 1.49636 1.08593 1.23849 1.22452 0.93627 0.95731 0.90152 1.21993 0.92656 0.90260 0.92603 0.90222 1.22469 0.98747 0.98342 0.96725 1.22732 0.99260 0.99197 0.96765 1.21808 0.89004 0.88720 0.94387 0.86076 1.23328 1.00284 0.95203 0.86518 1.45181 1.64533 1.01599 1.19166 1.19018 1.15445 0.79946 1.20976 0.90575 1.24827 0.96464 0.98123 1.00457 1.69796 1.20999 1.33839 1.31448 0.86122 0.76858 0.85000 0.77754 1.21556 1.21704 1.20681 0.92756 0.93092 0.91461 0.90818 0.89860 0.85749 0.91373 0.90458 0.92017 0.92209 0.91998 0.80027 0.80758 0.91695 0.90665 0.92633 0.92811 0.92857 0.92605 0.88818 0.89997 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.75 37.16 0.36 -1.50 16 2 C -0.13 -1.43 5.41 -26.73 -0.14 -1.58 16 3 C 0.14 1.87 2.33 -67.93 -0.16 1.71 16 4 C -0.13 -1.47 5.52 -26.74 -0.15 -1.62 16 5 C -0.15 -1.32 9.73 37.16 0.36 -0.96 16 6 N -0.25 -3.80 2.66 -50.69 -0.13 -3.94 16 7 N -0.28 -4.20 11.55 30.59 0.35 -3.85 16 8 C -0.01 -0.11 12.03 -17.43 -0.21 -0.32 16 9 C -0.20 -3.01 8.64 -38.99 -0.34 -3.35 16 10 C -0.02 -0.37 6.56 -82.06 -0.54 -0.91 16 11 C 0.58 10.61 7.50 -12.64 -0.09 10.52 16 12 O -0.56 -10.90 14.41 5.25 0.08 -10.82 16 13 N -0.57 -10.72 2.26 -173.19 -0.39 -11.12 16 14 C 0.10 1.98 5.87 -3.21 -0.02 1.96 16 15 C 0.13 2.58 4.32 -65.66 -0.28 2.30 16 16 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 17 C -0.12 -2.17 6.18 -25.25 -0.16 -2.32 16 18 C -0.14 -2.51 6.18 -25.25 -0.16 -2.67 16 19 C 0.17 3.53 3.11 -65.90 -0.21 3.33 16 20 H 0.12 2.88 6.35 -51.93 -0.33 2.55 16 21 C 0.07 1.36 5.46 -3.47 -0.02 1.35 16 22 N -0.58 -13.38 2.81 -152.86 -0.43 -13.81 16 23 C -0.23 -5.75 10.37 -15.06 -0.16 -5.91 16 24 H 0.08 1.91 7.84 -52.48 -0.41 1.50 16 25 C 0.00 -0.04 5.44 -17.44 -0.09 -0.14 16 26 N -0.91 -24.03 10.37 55.49 0.58 -23.46 16 27 Si 0.91 20.77 29.56 -169.99 -5.02 15.75 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.73 7.91 -51.93 -0.41 0.32 16 33 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 35 H 0.08 0.75 6.28 -51.93 -0.33 0.42 16 36 H 0.12 1.85 5.85 -51.93 -0.30 1.54 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.47 6.35 -51.93 -0.33 0.14 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.18 2.55 4.73 -52.48 -0.25 2.30 16 44 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.08 1.35 7.18 -51.93 -0.37 0.98 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.05 0.92 7.84 -51.93 -0.41 0.51 16 48 H 0.05 0.88 6.26 -51.93 -0.33 0.56 16 49 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.09 1.66 2.88 -51.93 -0.15 1.51 16 51 H 0.08 1.91 7.81 -51.93 -0.41 1.50 16 52 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 392.47 15.07 5.91 5.91 Total: -1.00 -28.02 392.47 -9.28 -37.30 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -8.22 Total: 8.14 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.00 Total: -0.10 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.03 Total: -56.17 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.02 -9.28 -37.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029338578.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.428 kcal (2) G-P(sol) polarization free energy of solvation -28.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds