Wall clock time and date at job start Wed Apr 1 2020 03:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.46968 * 2 1 4 4 C 1.52997 * 109.47773 * 64.99654 * 3 2 1 5 5 C 1.52996 * 109.47585 * 184.99867 * 4 3 2 6 6 N 1.46503 * 109.47077 * 184.99793 * 3 2 1 7 7 C 1.35036 * 124.88404 * 275.02499 * 6 3 2 8 8 C 1.35367 * 107.22902 * 179.76512 * 7 6 3 9 9 C 1.41509 * 105.50187 * 0.35175 * 8 7 6 10 10 C 1.47711 * 126.51570 * 179.90646 * 9 8 7 11 11 O 1.21572 * 120.00138 * 7.11933 * 10 9 8 12 12 N 1.34774 * 119.99468 * 187.12524 * 10 9 8 13 13 C 1.47158 * 120.71350 * 356.60550 * 12 10 9 14 14 C 1.53882 * 108.03168 * 132.74122 * 13 12 10 15 15 H 1.09002 * 112.10097 * 181.91714 * 14 13 12 16 16 C 1.54552 * 107.82659 * 305.87000 * 14 13 12 17 17 C 1.55859 * 104.09559 * 89.28080 * 16 14 13 18 18 C 1.54547 * 104.99729 * 359.97438 * 17 16 14 19 19 H 1.08997 * 112.68212 * 146.69976 * 18 17 16 20 20 C 1.47164 * 120.70807 * 176.58928 * 12 10 9 21 21 N 1.48302 * 107.21243 * 58.36133 * 14 13 12 22 22 C 1.36938 * 128.07860 * 106.70403 * 21 14 13 23 23 H 1.07994 * 119.99702 * 6.24366 * 22 21 14 24 24 C 1.38814 * 120.00114 * 186.24684 * 22 21 14 25 25 N 1.31626 * 119.99827 * 23.70263 * 24 22 21 26 26 Si 1.86794 * 120.00076 * 203.70511 * 24 22 21 27 27 H 1.48499 * 109.47095 * 94.99749 * 26 24 22 28 28 H 1.48507 * 109.47166 * 214.99706 * 26 24 22 29 29 H 1.48502 * 109.47218 * 334.99584 * 26 24 22 30 30 N 1.28468 * 124.88684 * 95.02315 * 6 3 2 31 31 H 1.09003 * 109.46816 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47413 * 300.00224 * 1 2 3 33 33 H 1.09000 * 109.46795 * 60.00829 * 1 2 3 34 34 H 1.08999 * 109.47652 * 239.99314 * 2 1 3 35 35 H 1.09007 * 109.46949 * 119.99476 * 2 1 3 36 36 H 1.09000 * 109.47140 * 304.99220 * 3 2 1 37 37 H 1.09004 * 109.46841 * 305.00256 * 4 3 2 38 38 H 1.09011 * 109.47040 * 64.99635 * 4 3 2 39 39 H 1.08998 * 109.47200 * 179.97438 * 5 4 3 40 40 H 1.09004 * 109.47348 * 300.00078 * 5 4 3 41 41 H 1.08998 * 109.46823 * 60.00085 * 5 4 3 42 42 H 1.07998 * 126.38469 * 359.95715 * 7 6 3 43 43 H 1.07993 * 127.25271 * 180.24561 * 8 7 6 44 44 H 1.09005 * 109.75430 * 252.37358 * 13 12 10 45 45 H 1.09002 * 109.74881 * 13.10271 * 13 12 10 46 46 H 1.09002 * 110.36236 * 207.91529 * 16 14 13 47 47 H 1.08997 * 110.36799 * 330.22739 * 16 14 13 48 48 H 1.08998 * 110.27906 * 241.10016 * 17 16 14 49 49 H 1.08994 * 110.39218 * 118.92437 * 17 16 14 50 50 H 1.09005 * 109.74684 * 346.89421 * 20 12 10 51 51 H 1.09000 * 109.75292 * 107.62627 * 20 12 10 52 52 H 0.96998 * 119.99727 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6352 2.1266 1.3072 5 6 2.0353 3.6024 1.2557 6 7 3.5001 1.4442 -0.1203 7 6 4.3603 1.3161 0.9127 8 6 5.6122 1.3603 0.3997 9 6 5.4437 1.5301 -0.9950 10 6 6.5177 1.6382 -2.0033 11 8 7.6752 1.4536 -1.6807 12 7 6.2143 1.9414 -3.2810 13 6 4.8134 2.0950 -3.7047 14 6 4.7042 3.3901 -4.5286 15 1 3.6813 3.5868 -4.8497 16 6 5.2801 4.5433 -3.6759 17 6 6.7968 4.5597 -4.0344 18 6 6.9774 3.4190 -5.0613 19 1 7.7460 3.6383 -5.8024 20 6 7.2769 2.1264 -4.2821 21 7 5.6363 3.2608 -5.6749 22 6 5.3303 3.0456 -6.9921 23 1 4.2997 3.0496 -7.3146 24 6 6.3449 2.8222 -7.9129 25 7 7.5089 2.3584 -7.5099 26 14 6.0582 3.1800 -9.7237 27 1 6.5518 4.5436 -10.0430 28 1 6.7893 2.1835 -10.5470 29 1 4.6055 3.0971 -10.0207 30 7 4.1462 1.5678 -1.2238 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.8935 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 1.6055 1.9814 -0.8419 37 1 0.5562 2.0471 1.4400 38 1 2.1407 1.6420 2.1427 39 1 1.7465 4.0899 2.1869 40 1 3.1143 3.6820 1.1230 41 1 1.5298 4.0870 0.4204 42 1 4.0982 1.1972 1.9536 43 1 6.5435 1.2838 0.9411 44 1 4.5182 1.2429 -4.3171 45 1 4.1686 2.1605 -2.8283 46 1 4.8117 5.4885 -3.9506 47 1 5.1334 4.3406 -2.6151 48 1 7.3972 4.3680 -3.1451 49 1 7.0718 5.5166 -4.4780 50 1 8.2422 2.2125 -3.7831 51 1 7.2898 1.2783 -4.9667 52 1 8.2177 2.2019 -8.1533 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029503510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:43 Heat of formation + Delta-G solvation = 88.466205 kcal Electronic energy + Delta-G solvation = -32519.743374 eV Core-core repulsion = 28522.451439 eV Total energy + Delta-G solvation = -3997.291935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.69498 -39.69343 -37.69490 -37.09124 -33.68219 -32.39496 -32.23723 -31.55393 -30.87785 -30.06928 -29.17385 -27.05271 -25.96535 -23.99083 -23.72638 -23.38098 -22.49591 -22.06464 -20.11847 -19.61182 -19.54004 -18.62169 -17.51211 -16.84487 -16.10193 -15.99051 -15.27278 -15.12516 -14.97450 -14.59754 -14.47525 -14.21146 -13.84328 -13.73819 -13.32314 -13.27293 -12.98173 -12.84337 -12.68852 -12.61866 -12.59021 -12.29020 -11.99814 -11.81112 -11.61909 -11.54898 -11.45676 -11.30907 -11.16373 -11.04711 -10.82940 -10.80184 -10.26777 -10.21742 -9.91677 -9.80037 -9.53404 -9.45814 -9.29995 -9.08853 -8.93272 -8.63727 -7.88434 -6.83400 -5.82271 -3.04149 1.82015 2.29092 2.38519 3.40907 3.48126 3.49533 3.72787 3.89714 3.98918 4.29553 4.48776 4.50973 4.63867 4.69037 4.76067 4.88834 4.91820 5.12943 5.15618 5.25901 5.31279 5.34606 5.39309 5.46532 5.55790 5.59353 5.65786 5.71957 5.77486 5.81810 5.82708 5.84765 5.86963 5.87793 6.05755 6.17495 6.30874 6.44711 6.51881 6.54573 6.63700 6.76422 6.76755 6.86264 6.93062 6.99879 7.17863 7.35191 7.55643 7.76040 8.03161 8.16333 8.25354 8.82217 9.09622 9.75475 10.51892 11.32306 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.003225 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.173791 B = 8680.318557 C = 9450.010099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.147 3.853 4 C -0.135 4.135 5 C -0.158 4.158 6 N -0.282 5.282 7 C -0.020 4.020 8 C -0.183 4.183 9 C 0.000 4.000 10 C 0.587 3.413 11 O -0.555 6.555 12 N -0.574 5.574 13 C 0.070 3.930 14 C 0.136 3.864 15 H 0.074 0.926 16 C -0.121 4.121 17 C -0.133 4.133 18 C 0.165 3.835 19 H 0.117 0.883 20 C 0.109 3.891 21 N -0.586 5.586 22 C -0.228 4.228 23 H 0.079 0.921 24 C -0.002 4.002 25 N -0.903 5.903 26 Si 0.901 3.099 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.281 1.281 30 N -0.256 5.256 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.174 0.826 43 H 0.158 0.842 44 H 0.057 0.943 45 H 0.119 0.881 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.053 0.947 50 H 0.069 0.931 51 H 0.079 0.921 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.661 -0.824 20.047 24.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.046 3.954 4 C -0.173 4.173 5 C -0.216 4.216 6 N -0.069 5.069 7 C -0.163 4.163 8 C -0.212 4.212 9 C -0.160 4.160 10 C 0.373 3.627 11 O -0.433 6.433 12 N -0.304 5.304 13 C -0.056 4.056 14 C 0.028 3.972 15 H 0.092 0.908 16 C -0.160 4.160 17 C -0.173 4.173 18 C 0.057 3.943 19 H 0.135 0.865 20 C -0.014 4.014 21 N -0.307 5.307 22 C -0.356 4.356 23 H 0.097 0.903 24 C -0.200 4.200 25 N -0.549 5.549 26 Si 0.731 3.269 27 H -0.217 1.217 28 H -0.220 1.220 29 H -0.207 1.207 30 N -0.090 5.090 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.191 0.809 43 H 0.175 0.825 44 H 0.076 0.924 45 H 0.135 0.865 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.088 0.912 51 H 0.097 0.903 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.872 -0.883 19.074 23.602 hybrid contribution 0.423 -0.070 -0.330 0.541 sum -13.449 -0.953 18.745 23.090 Atomic orbital electron populations 1.21794 0.94002 1.02627 1.02414 1.21944 0.97046 0.94707 1.03730 1.21709 0.74510 0.98232 1.00920 1.21989 1.02863 0.96661 0.95776 1.21825 1.02398 0.95007 1.02326 1.45906 1.07077 1.50069 1.03804 1.22637 0.89594 1.08682 0.95340 1.21716 0.97835 1.08480 0.93128 1.22187 0.90309 1.08722 0.94799 1.17063 0.86367 0.77948 0.81346 1.90727 1.19533 1.52940 1.80139 1.48061 1.08940 1.65742 1.07693 1.23303 0.81847 0.99521 1.00937 1.21908 0.94766 0.92227 0.88338 0.90791 1.22702 0.96615 0.98481 0.98231 1.22857 0.95509 0.99852 0.99049 1.21929 0.90659 0.89620 0.92055 0.86508 1.22482 0.88482 1.01522 0.88879 1.45282 1.00466 1.82767 1.02190 1.18980 0.93075 1.42583 0.80919 0.90316 1.24668 0.96606 1.00903 0.97816 1.69995 1.05037 1.46297 1.33527 0.86273 0.77362 0.77880 0.85396 1.21692 1.22024 1.20683 1.73484 1.06019 1.19725 1.09756 0.91881 0.92094 0.91999 0.90549 0.91082 0.87268 0.89032 0.90735 0.92032 0.92207 0.92175 0.80892 0.82453 0.92446 0.86461 0.92853 0.92957 0.92880 0.92838 0.91235 0.90320 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.67 37.16 0.36 -0.39 16 2 C -0.14 -0.93 5.73 -26.73 -0.15 -1.09 16 3 C 0.15 1.14 2.66 -67.93 -0.18 0.96 16 4 C -0.13 -0.72 4.94 -26.73 -0.13 -0.85 16 5 C -0.16 -1.05 9.77 37.16 0.36 -0.69 16 6 N -0.28 -3.16 2.81 -54.83 -0.15 -3.31 16 7 C -0.02 -0.21 9.76 -17.17 -0.17 -0.38 16 8 C -0.18 -2.55 10.81 -39.36 -0.43 -2.98 16 9 C 0.00 0.00 6.88 -82.76 -0.57 -0.57 16 10 C 0.59 12.10 7.71 -12.39 -0.10 12.01 16 11 O -0.56 -12.78 16.42 5.30 0.09 -12.69 16 12 N -0.57 -12.10 2.26 -172.71 -0.39 -12.49 16 13 C 0.07 1.37 5.68 -3.22 -0.02 1.35 16 14 C 0.14 2.80 4.27 -65.66 -0.28 2.52 16 15 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 16 C -0.12 -2.28 6.31 -24.39 -0.15 -2.44 16 17 C -0.13 -2.73 6.22 -24.39 -0.15 -2.89 16 18 C 0.17 3.91 3.23 -65.66 -0.21 3.70 16 19 H 0.12 3.10 6.29 -51.93 -0.33 2.77 16 20 C 0.11 2.55 5.88 -3.23 -0.02 2.53 16 21 N -0.59 -14.44 2.82 -152.60 -0.43 -14.87 16 22 C -0.23 -6.14 10.30 -15.06 -0.16 -6.30 16 23 H 0.08 2.07 7.93 -52.49 -0.42 1.66 16 24 C 0.00 -0.07 5.27 -17.43 -0.09 -0.16 16 25 N -0.90 -25.55 11.06 55.49 0.61 -24.94 16 26 Si 0.90 21.63 29.61 -169.99 -5.03 16.59 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 30 N -0.26 -3.83 8.34 33.42 0.28 -3.55 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.22 6.46 -51.93 -0.34 -0.11 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.34 6.34 -51.93 -0.33 0.01 16 38 H 0.07 0.34 6.80 -51.92 -0.35 -0.01 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.52 7.09 -51.93 -0.37 0.15 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.17 1.17 7.04 -52.49 -0.37 0.80 16 43 H 0.16 2.05 8.06 -52.49 -0.42 1.62 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.12 2.08 4.00 -92.30 -0.37 1.71 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.05 0.94 7.84 -51.93 -0.41 0.53 16 48 H 0.05 1.07 7.84 -51.93 -0.41 0.66 16 49 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.07 1.61 7.14 -51.93 -0.37 1.24 16 51 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 52 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 398.59 15.07 6.01 6.01 Total: -1.00 -31.92 398.59 -9.79 -41.71 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -8.68 Total: 3.21 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -2.08 Total: 4.34 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.08 Total: -59.16 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.92 -9.79 -41.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029503510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.172 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds