Wall clock time and date at job start Wed Apr 1 2020 03:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.46968 * 2 1 4 4 C 1.52997 * 109.47773 * 64.99654 * 3 2 1 5 5 C 1.52996 * 109.47585 * 184.99867 * 4 3 2 6 6 N 1.46503 * 109.47077 * 184.99793 * 3 2 1 7 7 C 1.35036 * 124.88404 * 275.02499 * 6 3 2 8 8 C 1.35367 * 107.22902 * 179.76512 * 7 6 3 9 9 C 1.41509 * 105.50187 * 0.35175 * 8 7 6 10 10 C 1.47711 * 126.51570 * 179.90646 * 9 8 7 11 11 O 1.21572 * 120.00138 * 7.11933 * 10 9 8 12 12 N 1.34774 * 119.99468 * 187.12524 * 10 9 8 13 13 C 1.47158 * 120.71350 * 356.60550 * 12 10 9 14 14 C 1.53882 * 108.03168 * 132.74122 * 13 12 10 15 15 H 1.09002 * 112.10097 * 181.91714 * 14 13 12 16 16 C 1.54552 * 107.82659 * 305.87000 * 14 13 12 17 17 C 1.55859 * 104.09559 * 89.28080 * 16 14 13 18 18 C 1.54547 * 104.99729 * 359.97438 * 17 16 14 19 19 H 1.08997 * 112.68212 * 146.69976 * 18 17 16 20 20 C 1.47164 * 120.70807 * 176.58928 * 12 10 9 21 21 N 1.48302 * 107.21243 * 58.36133 * 14 13 12 22 22 C 1.36938 * 128.07860 * 106.70403 * 21 14 13 23 23 H 1.07994 * 119.99702 * 6.24366 * 22 21 14 24 24 C 1.38814 * 120.00114 * 186.24684 * 22 21 14 25 25 N 1.31626 * 119.99827 * 23.70263 * 24 22 21 26 26 Si 1.86794 * 120.00076 * 203.70511 * 24 22 21 27 27 H 1.48499 * 109.47095 * 94.99749 * 26 24 22 28 28 H 1.48507 * 109.47166 * 214.99706 * 26 24 22 29 29 H 1.48502 * 109.47218 * 334.99584 * 26 24 22 30 30 N 1.28468 * 124.88684 * 95.02315 * 6 3 2 31 31 H 1.09003 * 109.46816 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47413 * 300.00224 * 1 2 3 33 33 H 1.09000 * 109.46795 * 60.00829 * 1 2 3 34 34 H 1.08999 * 109.47652 * 239.99314 * 2 1 3 35 35 H 1.09007 * 109.46949 * 119.99476 * 2 1 3 36 36 H 1.09000 * 109.47140 * 304.99220 * 3 2 1 37 37 H 1.09004 * 109.46841 * 305.00256 * 4 3 2 38 38 H 1.09011 * 109.47040 * 64.99635 * 4 3 2 39 39 H 1.08998 * 109.47200 * 179.97438 * 5 4 3 40 40 H 1.09004 * 109.47348 * 300.00078 * 5 4 3 41 41 H 1.08998 * 109.46823 * 60.00085 * 5 4 3 42 42 H 1.07998 * 126.38469 * 359.95715 * 7 6 3 43 43 H 1.07993 * 127.25271 * 180.24561 * 8 7 6 44 44 H 1.09005 * 109.75430 * 252.37358 * 13 12 10 45 45 H 1.09002 * 109.74881 * 13.10271 * 13 12 10 46 46 H 1.09002 * 110.36236 * 207.91529 * 16 14 13 47 47 H 1.08997 * 110.36799 * 330.22739 * 16 14 13 48 48 H 1.08998 * 110.27906 * 241.10016 * 17 16 14 49 49 H 1.08994 * 110.39218 * 118.92437 * 17 16 14 50 50 H 1.09005 * 109.74684 * 346.89421 * 20 12 10 51 51 H 1.09000 * 109.75292 * 107.62627 * 20 12 10 52 52 H 0.96998 * 119.99727 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6352 2.1266 1.3072 5 6 2.0353 3.6024 1.2557 6 7 3.5001 1.4442 -0.1203 7 6 4.3603 1.3161 0.9127 8 6 5.6122 1.3603 0.3997 9 6 5.4437 1.5301 -0.9950 10 6 6.5177 1.6382 -2.0033 11 8 7.6752 1.4536 -1.6807 12 7 6.2143 1.9414 -3.2810 13 6 4.8134 2.0950 -3.7047 14 6 4.7042 3.3901 -4.5286 15 1 3.6813 3.5868 -4.8497 16 6 5.2801 4.5433 -3.6759 17 6 6.7968 4.5597 -4.0344 18 6 6.9774 3.4190 -5.0613 19 1 7.7460 3.6383 -5.8024 20 6 7.2769 2.1264 -4.2821 21 7 5.6363 3.2608 -5.6749 22 6 5.3303 3.0456 -6.9921 23 1 4.2997 3.0496 -7.3146 24 6 6.3449 2.8222 -7.9129 25 7 7.5089 2.3584 -7.5099 26 14 6.0582 3.1800 -9.7237 27 1 6.5518 4.5436 -10.0430 28 1 6.7893 2.1835 -10.5470 29 1 4.6055 3.0971 -10.0207 30 7 4.1462 1.5678 -1.2238 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.8935 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 1.6055 1.9814 -0.8419 37 1 0.5562 2.0471 1.4400 38 1 2.1407 1.6420 2.1427 39 1 1.7465 4.0899 2.1869 40 1 3.1143 3.6820 1.1230 41 1 1.5298 4.0870 0.4204 42 1 4.0982 1.1972 1.9536 43 1 6.5435 1.2838 0.9411 44 1 4.5182 1.2429 -4.3171 45 1 4.1686 2.1605 -2.8283 46 1 4.8117 5.4885 -3.9506 47 1 5.1334 4.3406 -2.6151 48 1 7.3972 4.3680 -3.1451 49 1 7.0718 5.5166 -4.4780 50 1 8.2422 2.2125 -3.7831 51 1 7.2898 1.2783 -4.9667 52 1 8.2177 2.2019 -8.1533 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029503510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:42 Heat of formation + Delta-G solvation = 71.151585 kcal Electronic energy + Delta-G solvation = -32520.494192 eV Core-core repulsion = 28522.451439 eV Total energy + Delta-G solvation = -3998.042754 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.73612 -41.38353 -39.27921 -37.86855 -35.48327 -34.16116 -32.95788 -32.62220 -32.21063 -31.38567 -31.01722 -28.27274 -27.25250 -25.69705 -25.47886 -23.90066 -23.72774 -23.01489 -21.35834 -21.19333 -20.84800 -20.24617 -18.75893 -18.21484 -17.65015 -17.22990 -16.69962 -16.55886 -16.53242 -15.67924 -15.63505 -15.24354 -15.08708 -14.77877 -14.68525 -14.64053 -14.55361 -14.41062 -13.97924 -13.63635 -13.39685 -13.31719 -13.24482 -13.07472 -12.99026 -12.78982 -12.69656 -12.69148 -12.47120 -12.00859 -11.99796 -11.95917 -11.76950 -11.64938 -11.54281 -11.51018 -11.27313 -11.18947 -11.00530 -10.57018 -10.17006 -10.01004 -9.67106 -8.79759 -7.90004 -5.13145 0.57638 1.26027 1.47844 1.49582 1.51018 1.58569 2.14770 2.40693 2.52091 3.27024 3.28532 3.49251 3.58903 3.76431 3.93763 3.97652 4.04421 4.06290 4.14752 4.22419 4.28602 4.31107 4.42321 4.46579 4.50290 4.60247 4.61132 4.71148 4.73649 4.81524 4.84335 4.86402 4.88470 4.97677 5.00219 5.03781 5.06261 5.08352 5.14154 5.16731 5.20844 5.22790 5.33980 5.39329 5.44113 5.46573 5.53867 5.57954 5.79282 6.04279 6.17479 6.53815 6.94746 7.02503 7.22922 7.72402 8.51249 9.23788 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.003225 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.173791 B = 8680.318557 C = 9450.010099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.138 3.862 4 C -0.127 4.127 5 C -0.159 4.159 6 N -0.266 5.266 7 C 0.010 3.990 8 C -0.201 4.201 9 C -0.036 4.036 10 C 0.585 3.415 11 O -0.588 6.588 12 N -0.579 5.579 13 C 0.080 3.920 14 C 0.131 3.869 15 H 0.089 0.911 16 C -0.106 4.106 17 C -0.125 4.125 18 C 0.164 3.836 19 H 0.083 0.917 20 C 0.124 3.876 21 N -0.604 5.604 22 C -0.236 4.236 23 H 0.084 0.916 24 C -0.055 4.055 25 N -0.932 5.932 26 Si 0.965 3.035 27 H -0.291 1.291 28 H -0.301 1.301 29 H -0.269 1.269 30 N -0.271 5.271 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.053 0.947 42 H 0.222 0.778 43 H 0.161 0.839 44 H 0.032 0.968 45 H 0.146 0.854 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.053 0.947 49 H 0.060 0.940 50 H 0.061 0.939 51 H 0.038 0.962 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.135 -0.064 23.053 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C 0.039 3.961 4 C -0.164 4.164 5 C -0.216 4.216 6 N -0.054 5.054 7 C -0.134 4.134 8 C -0.229 4.229 9 C -0.193 4.193 10 C 0.373 3.627 11 O -0.469 6.469 12 N -0.309 5.309 13 C -0.045 4.045 14 C 0.024 3.976 15 H 0.107 0.893 16 C -0.145 4.145 17 C -0.164 4.164 18 C 0.056 3.944 19 H 0.101 0.899 20 C 0.000 4.000 21 N -0.326 5.326 22 C -0.364 4.364 23 H 0.101 0.899 24 C -0.250 4.250 25 N -0.579 5.579 26 Si 0.795 3.205 27 H -0.218 1.218 28 H -0.229 1.229 29 H -0.193 1.193 30 N -0.108 5.108 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.239 0.761 43 H 0.178 0.822 44 H 0.051 0.949 45 H 0.162 0.838 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.056 0.944 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -17.394 -0.113 22.098 28.123 hybrid contribution 1.391 -0.384 -1.139 1.838 sum -16.003 -0.497 20.959 26.375 Atomic orbital electron populations 1.21791 0.92325 1.03090 1.03293 1.21909 0.98394 0.93653 1.02981 1.22142 0.72145 0.99255 1.02573 1.22030 1.04603 0.95379 0.94430 1.21829 1.00791 0.96118 1.02899 1.46281 1.08495 1.47601 1.03013 1.23203 0.87908 1.05388 0.96852 1.21902 0.99656 1.09485 0.91819 1.21705 0.90219 1.12330 0.95063 1.17569 0.87043 0.76576 0.81467 1.90688 1.21293 1.54162 1.80708 1.48041 1.08757 1.66360 1.07739 1.23296 0.81484 0.98137 1.01591 1.22158 0.94940 0.93178 0.87373 0.89273 1.22597 0.94878 0.98510 0.98514 1.22734 0.97090 0.98620 0.97950 1.21776 0.89773 0.90788 0.92036 0.89889 1.22039 0.89207 0.99998 0.88778 1.45485 1.01611 1.82852 1.02637 1.19308 0.93284 1.41577 0.82237 0.89870 1.25401 0.96661 1.01401 1.01489 1.70167 1.05752 1.47735 1.34279 0.85257 0.77609 0.76945 0.80734 1.21825 1.22859 1.19321 1.73162 1.05344 1.20433 1.11833 0.91701 0.89940 0.92395 0.93266 0.89912 0.87724 0.86493 0.88933 0.90546 0.94427 0.92834 0.76137 0.82155 0.94922 0.83796 0.90904 0.91671 0.92816 0.92093 0.92026 0.94383 0.94295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.67 71.98 0.70 -0.27 16 2 C -0.13 -1.39 5.73 30.59 0.18 -1.22 16 3 C 0.14 1.67 2.66 44.99 0.12 1.79 16 4 C -0.13 -0.73 4.94 30.59 0.15 -0.58 16 5 C -0.16 -1.50 9.77 71.98 0.70 -0.80 16 6 N -0.27 -5.24 2.81 -327.39 -0.92 -6.16 16 7 C 0.01 0.17 9.76 83.54 0.82 0.99 16 8 C -0.20 -5.26 10.81 22.41 0.24 -5.02 16 9 C -0.04 -1.21 6.88 42.46 0.29 -0.91 16 10 C 0.59 24.87 7.71 86.75 0.67 25.53 16 11 O -0.59 -28.21 16.42 -3.94 -0.06 -28.27 16 12 N -0.58 -25.36 2.26 -818.59 -1.85 -27.21 16 13 C 0.08 3.19 5.68 86.55 0.49 3.68 16 14 C 0.13 5.33 4.27 45.47 0.19 5.53 16 15 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 16 C -0.11 -3.85 6.31 32.11 0.20 -3.64 16 17 C -0.12 -5.14 6.22 32.11 0.20 -4.94 16 18 C 0.16 8.12 3.23 45.46 0.15 8.26 16 19 H 0.08 4.68 6.29 -2.39 -0.02 4.66 16 20 C 0.12 6.17 5.88 86.54 0.51 6.68 16 21 N -0.60 -30.47 2.82 -636.72 -1.80 -32.26 16 22 C -0.24 -12.94 10.30 84.03 0.87 -12.07 16 23 H 0.08 4.39 7.93 -2.91 -0.02 4.36 16 24 C -0.05 -3.08 5.27 84.86 0.45 -2.64 16 25 N -0.93 -55.39 11.06 21.65 0.24 -55.15 16 26 Si 0.97 45.56 29.61 68.60 2.03 47.59 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 28 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 29 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 30 N -0.27 -7.80 8.34 -48.17 -0.40 -8.21 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.42 16 32 H 0.08 0.21 6.46 -2.39 -0.02 0.19 16 33 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.12 0.19 6.34 -2.38 -0.02 0.17 16 38 H 0.09 0.27 6.80 -2.38 -0.02 0.25 16 39 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.04 0.53 7.09 -2.38 -0.02 0.51 16 41 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.22 1.66 7.04 -2.91 -0.02 1.64 16 43 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 44 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.15 5.03 4.00 -54.61 -0.22 4.81 16 46 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.06 2.22 7.84 -2.39 -0.02 2.20 16 48 H 0.05 2.18 7.84 -2.39 -0.02 2.17 16 49 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 50 H 0.06 3.09 7.14 -2.38 -0.02 3.07 16 51 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -74.10 398.59 4.86 -69.24 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.70 Total: 20.05 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 6.92 Total: 20.38 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -4.73 Total: -128.99 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.06 Total: -28.27 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -74.10 4.86 -69.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029503510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.393 kcal (2) G-P(sol) polarization free energy of solvation -74.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds