Wall clock time and date at job start Wed Apr 1 2020 04:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47370 * 2 1 4 4 C 1.53001 * 109.47370 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47098 * 179.97438 * 4 3 2 6 6 C 1.34260 * 125.75241 * 125.31360 * 5 4 3 7 7 C 1.38048 * 107.41312 * 180.14333 * 6 5 4 8 8 C 1.47429 * 126.40973 * 179.87188 * 7 6 5 9 9 O 1.21603 * 119.99992 * 219.84985 * 8 7 6 10 10 N 1.34780 * 120.00007 * 39.85494 * 8 7 6 11 11 C 1.47163 * 120.71071 * 4.91536 * 10 8 7 12 12 C 1.55895 * 107.94759 * 132.40783 * 11 10 8 13 13 H 1.08998 * 112.45384 * 181.84786 * 12 11 10 14 14 C 1.54535 * 108.44641 * 307.13662 * 12 11 10 15 15 C 1.53738 * 104.95785 * 88.28448 * 14 12 11 16 16 C 1.54540 * 104.94997 * 0.02562 * 15 14 12 17 17 H 1.08997 * 112.18195 * 146.28785 * 16 15 14 18 18 C 1.47162 * 120.70614 * 184.89393 * 10 8 7 19 19 N 1.48307 * 104.35958 * 24.57345 * 16 15 14 20 20 C 1.36934 * 128.07490 * 139.08183 * 19 16 15 21 21 H 1.08003 * 119.99868 * 343.63532 * 20 19 16 22 22 C 1.38814 * 119.99983 * 163.62981 * 20 19 16 23 23 N 1.31617 * 119.99936 * 350.57151 * 22 20 19 24 24 Si 1.86802 * 119.99769 * 170.57739 * 22 20 19 25 25 H 1.48505 * 109.46639 * 180.02562 * 24 22 20 26 26 H 1.48499 * 109.46889 * 299.99644 * 24 22 20 27 27 H 1.48495 * 109.47635 * 60.00045 * 24 22 20 28 28 C 1.41288 * 107.17137 * 359.60920 * 7 6 5 29 29 C 1.50697 * 125.98540 * 180.19894 * 28 7 6 30 30 N 1.30451 * 108.02129 * 0.24064 * 28 7 6 31 31 H 1.08993 * 109.47218 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47283 * 300.00466 * 1 2 3 33 33 H 1.08995 * 109.46809 * 60.00240 * 1 2 3 34 34 H 1.08999 * 109.47078 * 239.99125 * 2 1 3 35 35 H 1.09002 * 109.47098 * 119.99556 * 2 1 3 36 36 H 1.08997 * 109.47031 * 59.99746 * 3 2 1 37 37 H 1.09002 * 109.46648 * 299.99832 * 3 2 1 38 38 H 1.09002 * 109.46595 * 59.99276 * 4 3 2 39 39 H 1.08995 * 109.46809 * 299.99760 * 4 3 2 40 40 H 1.07997 * 126.29189 * 0.02562 * 6 5 4 41 41 H 1.08988 * 109.75102 * 252.37165 * 11 10 8 42 42 H 1.09001 * 109.75082 * 13.05805 * 11 10 8 43 43 H 1.09000 * 110.36942 * 207.00253 * 14 12 11 44 44 H 1.09003 * 110.36428 * 329.20824 * 14 12 11 45 45 H 1.08998 * 110.42162 * 241.06777 * 15 14 12 46 46 H 1.08997 * 110.20150 * 118.82008 * 15 14 12 47 47 H 1.09003 * 109.74750 * 107.62903 * 18 10 8 48 48 H 1.08999 * 109.79136 * 346.92139 * 18 10 8 49 49 H 0.97005 * 119.99801 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.46764 * 90.00634 * 29 28 7 51 51 H 1.09003 * 109.47277 * 209.99738 * 29 28 7 52 52 H 1.08994 * 109.47402 * 330.00735 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.9133 3.3539 0.8892 7 6 5.1110 4.6737 0.5359 8 6 5.9728 5.6463 1.2323 9 8 5.6033 6.7966 1.3702 10 7 7.1702 5.2605 1.7160 11 6 7.6802 3.9031 1.4651 12 6 9.1581 4.0263 0.9846 13 1 9.6002 3.0591 0.7456 14 6 9.2052 5.0131 -0.2038 15 6 9.3862 6.3985 0.4378 16 6 9.4336 6.1303 1.9590 17 1 10.0980 6.8210 2.4781 18 6 7.9957 6.1879 2.5060 19 7 9.8897 4.7235 2.0704 20 6 10.7821 4.1933 2.9635 21 1 11.4390 4.8442 3.5215 22 6 10.8424 2.8193 3.1517 23 7 9.9252 2.0410 2.6176 24 14 12.2253 2.0750 4.1632 25 1 12.0639 0.5996 4.2122 26 1 13.5305 2.4092 3.5388 27 1 12.1812 2.6243 5.5421 28 6 4.3376 4.9161 -0.6214 29 6 4.2452 6.2224 -1.3670 30 7 3.7169 3.8112 -0.9307 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5140 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6767 1.9563 -0.8900 38 1 3.9337 0.9284 -0.8891 39 1 3.9330 0.9288 0.8909 40 1 5.3622 2.8424 1.7278 41 1 7.6330 3.3165 2.3824 42 1 7.0833 3.4228 0.6897 43 1 10.0509 4.7854 -0.8527 44 1 8.2734 4.9723 -0.7679 45 1 8.5433 7.0444 0.1922 46 1 10.3205 6.8491 0.1031 47 1 7.9879 5.8870 3.5536 48 1 7.6059 7.2014 2.4111 49 1 9.9676 1.0808 2.7488 50 1 5.0168 6.2570 -2.1361 51 1 3.2635 6.3059 -1.8333 52 1 4.3885 7.0489 -0.6711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029549002.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:22 Heat of formation + Delta-G solvation = 64.966405 kcal Electronic energy + Delta-G solvation = -32036.729030 eV Core-core repulsion = 28038.418067 eV Total energy + Delta-G solvation = -3998.310963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.32849 -39.57845 -37.51558 -36.20927 -33.71267 -33.31734 -32.50124 -30.95422 -30.24899 -29.46820 -29.21868 -27.45576 -26.09899 -24.23763 -23.78548 -23.43863 -21.77631 -21.50503 -20.22524 -19.63295 -19.19446 -18.49837 -17.30457 -16.28561 -16.06760 -15.69591 -15.43375 -15.13576 -14.96793 -14.56222 -14.20612 -13.96402 -13.76357 -13.69512 -13.30555 -12.95853 -12.94610 -12.84926 -12.66506 -12.60743 -12.44298 -11.93922 -11.77057 -11.70792 -11.63780 -11.63667 -11.47886 -11.38754 -11.07374 -10.97890 -10.89198 -10.77940 -10.57222 -10.34676 -10.07107 -9.82650 -9.62792 -9.53421 -9.31837 -9.15742 -8.75755 -8.35762 -7.96438 -6.81269 -5.88569 -3.21883 1.79744 2.40470 2.47175 3.33726 3.38771 3.39930 3.57124 3.86279 4.26296 4.40325 4.52026 4.68367 4.74386 4.86519 4.95386 5.08720 5.17294 5.19797 5.30699 5.31928 5.40908 5.45539 5.46124 5.58163 5.73389 5.76843 5.77186 5.78908 5.80343 5.83167 5.86121 5.95295 5.98462 6.04940 6.08261 6.13296 6.19756 6.36639 6.44434 6.59410 6.63827 6.70228 6.71324 6.76417 6.93002 6.95074 7.03396 7.28177 7.47843 7.64904 7.76258 8.10944 8.21194 8.85083 9.03298 9.65405 10.43941 11.25312 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.003427 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.646072 B = 8168.458395 C =10089.981740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.131 4.131 4 C 0.131 3.869 5 N -0.362 5.362 6 C 0.102 3.898 7 C -0.274 4.274 8 C 0.587 3.413 9 O -0.564 6.564 10 N -0.588 5.588 11 C 0.103 3.897 12 C 0.170 3.830 13 H 0.115 0.885 14 C -0.133 4.133 15 C -0.122 4.122 16 C 0.134 3.866 17 H 0.076 0.924 18 C 0.105 3.895 19 N -0.586 5.586 20 C -0.222 4.222 21 H 0.075 0.925 22 C -0.003 4.003 23 N -0.916 5.916 24 Si 0.911 3.089 25 H -0.291 1.291 26 H -0.286 1.286 27 H -0.285 1.285 28 C 0.122 3.878 29 C -0.077 4.077 30 N -0.304 5.304 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.183 0.817 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.061 0.939 48 H 0.075 0.925 49 H 0.254 0.746 50 H 0.075 0.925 51 H 0.070 0.930 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.308 -1.893 -6.404 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.169 4.169 4 C 0.010 3.990 5 N -0.141 5.141 6 C -0.048 4.048 7 C -0.289 4.289 8 C 0.375 3.625 9 O -0.445 6.445 10 N -0.319 5.319 11 C -0.021 4.021 12 C 0.062 3.938 13 H 0.133 0.867 14 C -0.173 4.173 15 C -0.161 4.161 16 C 0.025 3.975 17 H 0.094 0.906 18 C -0.020 4.020 19 N -0.307 5.307 20 C -0.350 4.350 21 H 0.093 0.907 22 C -0.200 4.200 23 N -0.562 5.562 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.212 1.212 27 H -0.211 1.211 28 C -0.045 4.045 29 C -0.136 4.136 30 N -0.126 5.126 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.200 0.800 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.094 0.906 49 H 0.064 0.936 50 H 0.094 0.906 51 H 0.089 0.911 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.220 -2.271 -6.997 16.010 hybrid contribution 1.298 -0.410 1.261 1.856 sum -12.922 -2.680 -5.736 14.390 Atomic orbital electron populations 1.21745 0.95410 1.01717 1.02035 1.21468 0.96396 0.95750 1.02443 1.21897 0.93385 0.97775 1.03876 1.21852 0.95640 0.77218 1.04259 1.48348 1.34748 1.10226 1.20742 1.23211 0.92734 0.93475 0.95414 1.20206 1.10564 0.94516 1.03631 1.17314 0.80631 0.86488 0.78036 1.90668 1.74061 1.19493 1.60303 1.48050 1.16999 1.15167 1.51645 1.23050 0.97080 0.81047 1.00950 1.22218 0.89145 0.96736 0.85660 0.86739 1.22480 0.99606 0.96511 0.98662 1.22355 0.99975 0.97092 0.96719 1.21989 0.92187 0.89274 0.94010 0.90582 1.22323 0.92257 0.92942 0.94456 1.45175 1.48902 1.02600 1.33984 1.18970 1.09934 0.90489 1.15642 0.90733 1.24807 0.98522 0.96422 1.00246 1.69827 1.33828 1.03746 1.48836 0.86216 0.81753 0.77999 0.79861 1.21657 1.21228 1.21136 1.22318 0.93359 0.94894 0.93944 1.20284 1.02453 0.91194 0.99678 1.77024 1.24901 0.96793 1.13912 0.92566 0.92681 0.92604 0.91558 0.91622 0.91373 0.90311 0.89457 0.88329 0.80001 0.90129 0.92177 0.92928 0.93101 0.92484 0.92836 0.92076 0.90622 0.93635 0.90630 0.91113 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.13 -1.13 5.39 -26.73 -0.14 -1.27 16 4 C 0.13 1.24 6.49 -4.04 -0.03 1.22 16 5 N -0.36 -4.87 3.65 -60.81 -0.22 -5.10 16 6 C 0.10 1.50 9.11 -16.56 -0.15 1.35 16 7 C -0.27 -4.66 5.21 -105.07 -0.55 -5.21 16 8 C 0.59 11.25 7.46 -12.52 -0.09 11.15 16 9 O -0.56 -11.95 15.21 5.27 0.08 -11.87 16 10 N -0.59 -11.31 2.29 -171.49 -0.39 -11.71 16 11 C 0.10 2.02 4.73 -2.13 -0.01 2.01 16 12 C 0.17 3.68 3.21 -64.57 -0.21 3.47 16 13 H 0.12 2.80 6.45 -51.93 -0.34 2.46 16 14 C -0.13 -2.55 6.19 -25.54 -0.16 -2.70 16 15 C -0.12 -2.25 6.17 -25.54 -0.16 -2.40 16 16 C 0.13 2.67 4.28 -65.63 -0.28 2.39 16 17 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 18 C 0.10 2.04 5.94 -3.19 -0.02 2.03 16 19 N -0.59 -13.62 2.78 -151.36 -0.42 -14.04 16 20 C -0.22 -5.69 10.36 -15.06 -0.16 -5.85 16 21 H 0.07 1.88 7.85 -52.48 -0.41 1.47 16 22 C 0.00 -0.08 5.41 -17.43 -0.09 -0.18 16 23 N -0.92 -23.84 10.36 55.49 0.58 -23.26 16 24 Si 0.91 20.73 29.56 -169.99 -5.03 15.70 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 28 C 0.12 1.95 7.26 -82.02 -0.60 1.36 16 29 C -0.08 -1.05 10.27 36.00 0.37 -0.68 16 30 N -0.30 -4.66 12.33 33.89 0.42 -4.24 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 0.75 8.06 -51.93 -0.42 0.33 16 40 H 0.18 2.42 7.30 -52.49 -0.38 2.04 16 41 H 0.08 1.79 7.72 -51.94 -0.40 1.38 16 42 H 0.06 1.09 5.18 -51.93 -0.27 0.82 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.94 7.88 -51.93 -0.41 0.53 16 45 H 0.06 1.03 7.86 -51.93 -0.41 0.62 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.08 1.43 7.08 -51.93 -0.37 1.06 16 49 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 50 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 51 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 52 H 0.09 1.37 6.80 -51.93 -0.35 1.02 16 LS Contribution 405.28 15.07 6.11 6.11 Total: -1.00 -29.64 405.28 -9.75 -39.39 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -8.81 Total: 3.93 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -2.06 Total: 5.08 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.04 Total: -58.35 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.64 -9.75 -39.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029549002.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.359 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds