Wall clock time and date at job start Wed Apr 1 2020 04:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47134 * 2 1 4 4 C 1.53005 * 109.47162 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47140 * 179.97438 * 4 3 2 6 6 N 1.39933 * 125.75569 * 269.68546 * 5 4 3 7 7 C 1.30443 * 108.90144 * 179.85056 * 6 5 4 8 8 C 1.41291 * 108.02040 * 0.40874 * 7 6 5 9 9 C 1.47427 * 126.41484 * 179.72155 * 8 7 6 10 10 O 1.21607 * 119.99645 * 205.86553 * 9 8 7 11 11 N 1.34779 * 120.00332 * 25.86363 * 9 8 7 12 12 C 1.47162 * 120.70647 * 4.87423 * 11 9 8 13 13 C 1.53890 * 108.02219 * 132.75419 * 12 11 9 14 14 H 1.09004 * 112.09629 * 181.91667 * 13 12 11 15 15 C 1.54542 * 107.83394 * 306.50870 * 13 12 11 16 16 C 1.54281 * 104.84927 * 89.07953 * 15 13 12 17 17 C 1.54541 * 104.84679 * 359.97438 * 16 15 13 18 18 H 1.09002 * 112.18073 * 146.41488 * 17 16 15 19 19 C 1.47160 * 120.71173 * 184.59709 * 11 9 8 20 20 N 1.48301 * 104.35635 * 24.70676 * 17 16 15 21 21 C 1.36939 * 128.07492 * 139.11914 * 20 17 16 22 22 H 1.08004 * 119.99943 * 188.22978 * 21 20 17 23 23 C 1.38813 * 120.00071 * 8.22419 * 21 20 17 24 24 N 1.31616 * 120.00041 * 12.23752 * 23 21 20 25 25 Si 1.86808 * 120.00092 * 192.23632 * 23 21 20 26 26 H 1.48497 * 109.47041 * 89.99848 * 25 23 21 27 27 H 1.48496 * 109.47300 * 210.00217 * 25 23 21 28 28 H 1.48501 * 109.47041 * 330.00198 * 25 23 21 29 29 C 1.34261 * 125.75564 * 89.99999 * 5 4 3 30 30 C 1.50703 * 126.28794 * 359.97438 * 29 5 4 31 31 H 1.08992 * 109.47406 * 300.00409 * 1 2 3 32 32 H 1.09006 * 109.47056 * 60.00201 * 1 2 3 33 33 H 1.09007 * 109.47062 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47275 * 239.99466 * 2 1 3 35 35 H 1.09006 * 109.47056 * 119.99799 * 2 1 3 36 36 H 1.08990 * 109.47583 * 59.99983 * 3 2 1 37 37 H 1.09003 * 109.47271 * 299.99411 * 3 2 1 38 38 H 1.09006 * 109.47053 * 299.99815 * 4 3 2 39 39 H 1.09002 * 109.47249 * 59.99464 * 4 3 2 40 40 H 1.07996 * 125.99258 * 180.17482 * 7 6 5 41 41 H 1.08996 * 109.75070 * 252.38543 * 12 11 9 42 42 H 1.09001 * 109.75133 * 13.07525 * 12 11 9 43 43 H 1.08995 * 110.36589 * 207.92495 * 15 13 12 44 44 H 1.09002 * 110.36244 * 330.23888 * 15 13 12 45 45 H 1.09007 * 110.36318 * 241.14706 * 16 15 13 46 46 H 1.09004 * 110.36454 * 118.83958 * 16 15 13 47 47 H 1.08997 * 109.74814 * 346.87784 * 19 11 9 48 48 H 1.08998 * 109.74796 * 107.60402 * 19 11 9 49 49 H 0.97000 * 120.00263 * 179.97438 * 24 23 21 50 50 H 1.08996 * 109.47397 * 90.00513 * 30 29 5 51 51 H 1.09005 * 109.46820 * 210.00386 * 30 29 5 52 52 H 1.08996 * 109.47117 * 329.99574 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8236 0.0000 6 7 4.3372 3.5918 -1.1359 7 6 4.7482 4.7708 -0.7582 8 6 4.7568 4.7989 0.6544 9 6 5.1583 5.9343 1.5047 10 8 5.5738 5.7341 2.6299 11 7 5.0650 7.1942 1.0350 12 6 4.4658 7.4627 -0.2820 13 6 3.4661 8.6218 -0.1229 14 1 2.9562 8.8548 -1.0578 15 6 2.4868 8.2496 1.0132 16 6 3.1540 8.7789 2.2996 17 6 4.4762 9.4223 1.8240 18 1 4.7523 10.2882 2.4258 19 6 5.5545 8.3312 1.8307 20 7 4.2216 9.7820 0.4080 21 6 4.5971 10.9199 -0.2549 22 1 4.2295 11.1099 -1.2525 23 6 5.4501 11.8292 0.3554 24 7 6.0875 11.4961 1.4577 25 14 5.6936 13.5256 -0.3880 26 1 4.6913 14.4630 0.1792 27 1 7.0607 14.0125 -0.0730 28 1 5.5224 13.4497 -1.8611 29 6 4.3194 3.5639 1.0893 30 6 4.1634 3.1269 2.5231 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6767 1.9563 0.8899 37 1 1.6767 1.9563 -0.8901 38 1 3.9330 0.9288 0.8909 39 1 3.9337 0.9284 -0.8891 40 1 5.0355 5.5819 -1.4108 41 1 5.2448 7.7429 -0.9909 42 1 3.9460 6.5733 -0.6385 43 1 1.5235 8.7354 0.8580 44 1 2.3626 7.1680 1.0678 45 1 3.3577 7.9576 2.9868 46 1 2.5188 9.5251 2.7769 47 1 5.7451 8.0093 2.8545 48 1 6.4718 8.7214 1.3899 49 1 6.6838 12.1313 1.8840 50 1 5.0945 2.6788 2.8697 51 1 3.9236 3.9914 3.1423 52 1 3.3590 2.3948 2.5943 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029549203.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:45 Heat of formation + Delta-G solvation = 73.623275 kcal Electronic energy + Delta-G solvation = -32000.049010 eV Core-core repulsion = 28002.113436 eV Total energy + Delta-G solvation = -3997.935573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.51124 -39.65424 -37.50744 -36.34018 -33.90966 -33.02421 -32.26718 -31.95393 -30.64734 -29.28826 -28.73548 -27.46205 -25.97878 -24.64754 -23.84353 -23.53790 -21.84645 -21.68007 -20.35817 -19.65622 -19.24902 -18.37439 -17.27591 -16.33990 -16.17542 -15.75773 -15.43808 -15.16890 -14.91955 -14.71780 -14.27967 -14.08073 -13.74987 -13.58084 -13.44062 -13.13219 -13.00038 -12.84226 -12.75646 -12.73067 -12.56499 -12.11996 -11.83459 -11.81387 -11.72586 -11.59871 -11.53097 -11.44154 -11.09314 -10.99961 -10.83595 -10.78696 -10.76700 -10.27390 -10.01419 -9.78223 -9.56300 -9.46761 -9.33300 -9.20238 -8.76194 -8.47579 -7.90775 -6.83975 -5.78768 -3.12434 1.63693 2.29009 2.36838 3.38324 3.44146 3.45933 3.65011 3.87938 4.25300 4.33015 4.44750 4.51939 4.60305 4.65114 4.89055 4.95861 5.00055 5.08676 5.19948 5.30974 5.32191 5.35759 5.36677 5.46646 5.47328 5.55210 5.66966 5.69374 5.74819 5.78073 5.80709 5.81846 5.88861 5.91361 5.99044 6.05246 6.27382 6.38998 6.43158 6.53503 6.59889 6.72316 6.79165 6.84917 6.87766 6.95697 7.08598 7.35638 7.54956 7.61819 7.76754 8.18195 8.22765 8.86873 9.09779 9.72260 10.47164 11.32517 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.002659 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.321737 B =10526.242921 C =10794.827745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.138 4.138 4 C 0.130 3.870 5 N -0.364 5.364 6 N -0.303 5.303 7 C 0.078 3.922 8 C -0.281 4.281 9 C 0.585 3.415 10 O -0.564 6.564 11 N -0.586 5.586 12 C 0.084 3.916 13 C 0.134 3.866 14 H 0.077 0.923 15 C -0.121 4.121 16 C -0.135 4.135 17 C 0.162 3.838 18 H 0.129 0.871 19 C 0.113 3.887 20 N -0.585 5.585 21 C -0.223 4.223 22 H 0.078 0.922 23 C -0.006 4.006 24 N -0.914 5.914 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.144 3.856 30 C -0.091 4.091 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.195 0.805 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.255 0.745 50 H 0.086 0.914 51 H 0.097 0.903 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.373 -21.251 -1.306 22.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.177 4.177 4 C 0.009 3.991 5 N -0.144 5.144 6 N -0.122 5.122 7 C -0.108 4.108 8 C -0.295 4.295 9 C 0.373 3.627 10 O -0.446 6.446 11 N -0.316 5.316 12 C -0.042 4.042 13 C 0.026 3.974 14 H 0.095 0.905 15 C -0.160 4.160 16 C -0.175 4.175 17 C 0.054 3.946 18 H 0.146 0.854 19 C -0.010 4.010 20 N -0.306 5.306 21 C -0.351 4.351 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.561 5.561 25 Si 0.742 3.258 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C 0.013 3.987 30 C -0.149 4.149 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.212 0.788 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.065 0.935 50 H 0.104 0.896 51 H 0.115 0.885 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.288 -21.966 -1.751 23.543 hybrid contribution 0.404 1.407 0.048 1.464 sum -7.884 -20.560 -1.703 22.085 Atomic orbital electron populations 1.21756 0.95273 1.01816 1.02177 1.21445 0.96502 0.95533 1.02385 1.22053 0.93750 0.98084 1.03765 1.21786 0.94930 0.77861 1.04534 1.48421 1.50521 1.12077 1.03413 1.77154 1.23101 1.04473 1.07462 1.24369 0.97061 0.95129 0.94273 1.20148 1.19524 0.96127 0.93713 1.17229 0.78025 0.81904 0.85505 1.90689 1.49088 1.84974 1.19800 1.47957 1.58783 1.05687 1.19196 1.22934 0.97393 0.99319 0.84522 1.21941 0.91677 0.87775 0.96046 0.90478 1.22444 0.98200 0.98774 0.96614 1.22637 0.99285 0.99079 0.96464 1.22036 0.89678 0.95481 0.87355 0.85370 1.22306 0.99094 0.85014 0.94563 1.45216 1.62984 1.15736 1.06703 1.19030 1.22504 0.94481 0.99039 0.90382 1.24745 0.98113 0.99117 0.98321 1.69796 1.30888 1.34418 1.20964 0.86132 0.77006 0.84412 0.78269 1.21674 1.21826 1.20756 1.21400 0.95775 0.90619 0.90892 1.20535 1.02625 1.03149 0.88608 0.92562 0.92547 0.92504 0.91568 0.91637 0.91166 0.90686 0.88898 0.88525 0.78824 0.91766 0.90464 0.92869 0.93083 0.92846 0.92990 0.91122 0.90833 0.93509 0.89590 0.88475 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.63 5.93 -26.74 -0.16 -0.78 16 3 C -0.14 -0.98 5.54 -26.73 -0.15 -1.13 16 4 C 0.13 1.03 6.03 -4.04 -0.02 1.01 16 5 N -0.36 -4.44 3.58 -56.60 -0.20 -4.65 16 6 N -0.30 -4.32 12.50 30.86 0.39 -3.93 16 7 C 0.08 1.15 9.61 -16.98 -0.16 0.99 16 8 C -0.28 -4.52 5.63 -105.07 -0.59 -5.11 16 9 C 0.58 11.13 7.55 -12.52 -0.09 11.04 16 10 O -0.56 -12.01 15.07 5.27 0.08 -11.93 16 11 N -0.59 -11.39 2.26 -173.10 -0.39 -11.78 16 12 C 0.08 1.48 4.45 -3.22 -0.01 1.47 16 13 C 0.13 2.60 4.32 -65.68 -0.28 2.32 16 14 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 15 C -0.12 -2.19 6.18 -25.25 -0.16 -2.35 16 16 C -0.14 -2.69 6.18 -25.25 -0.16 -2.84 16 17 C 0.16 3.70 3.21 -65.92 -0.21 3.49 16 18 H 0.13 3.34 6.00 -51.93 -0.31 3.03 16 19 C 0.11 2.51 5.87 -3.47 -0.02 2.49 16 20 N -0.59 -13.85 2.82 -152.90 -0.43 -14.28 16 21 C -0.22 -5.80 10.38 -15.06 -0.16 -5.96 16 22 H 0.08 1.98 7.86 -52.48 -0.41 1.57 16 23 C -0.01 -0.17 5.42 -17.43 -0.09 -0.27 16 24 N -0.91 -25.22 10.60 55.49 0.59 -24.63 16 25 Si 0.91 21.33 29.57 -169.99 -5.03 16.30 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 C 0.14 1.96 7.00 -81.60 -0.57 1.39 16 30 C -0.09 -0.99 9.22 36.01 0.33 -0.66 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.55 7.62 -51.93 -0.40 0.16 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.20 2.58 6.10 -52.49 -0.32 2.26 16 41 H 0.06 1.18 8.09 -51.93 -0.42 0.76 16 42 H 0.08 1.18 4.36 -51.93 -0.23 0.96 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.87 7.84 -51.93 -0.41 0.46 16 45 H 0.05 1.04 7.83 -51.92 -0.41 0.64 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.07 1.58 7.08 -51.93 -0.37 1.21 16 48 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 49 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 50 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 51 H 0.10 1.25 7.26 -51.93 -0.38 0.87 16 52 H 0.07 0.53 7.70 -51.93 -0.40 0.13 16 LS Contribution 402.04 15.07 6.06 6.06 Total: -1.00 -30.95 402.04 -9.76 -40.71 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -8.67 Total: 3.49 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -2.14 Total: 4.65 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.05 Total: -59.27 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.95 -9.76 -40.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029549203.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.333 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds