Wall clock time and date at job start Wed Apr 1 2020 03:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.53001 * 109.47328 * 184.99912 * 3 2 1 5 5 C 1.52999 * 109.47042 * 64.99478 * 4 3 2 6 6 N 1.46500 * 109.47520 * 64.99751 * 3 2 1 7 7 N 1.28465 * 124.88383 * 60.02004 * 6 3 2 8 8 C 1.31809 * 110.07490 * 179.97438 * 7 6 3 9 9 C 1.47707 * 126.51821 * 179.97438 * 8 7 6 10 10 O 1.21578 * 120.00272 * 180.02562 * 9 8 7 11 11 N 1.34771 * 120.00416 * 0.02562 * 9 8 7 12 12 C 1.47869 * 126.94128 * 359.68630 * 11 9 8 13 13 C 1.55971 * 105.13369 * 180.63385 * 12 11 9 14 14 H 1.09002 * 116.55355 * 160.10038 * 13 12 11 15 15 C 1.58973 * 98.68822 * 34.63866 * 13 12 11 16 16 C 1.49296 * 126.95218 * 180.02562 * 11 9 8 17 17 H 1.08995 * 116.14579 * 16.67559 * 16 11 9 18 18 C 1.56015 * 104.09320 * 247.53927 * 16 11 9 19 19 N 1.47873 * 105.10566 * 288.76365 * 18 16 11 20 20 C 1.36928 * 126.94682 * 182.02320 * 19 18 16 21 21 H 1.08004 * 119.99796 * 179.97438 * 20 19 18 22 22 C 1.38815 * 120.00070 * 359.97438 * 20 19 18 23 23 N 1.31612 * 119.99801 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99955 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47039 * 89.99822 * 24 22 20 26 26 H 1.48499 * 109.47260 * 209.99656 * 24 22 20 27 27 H 1.48495 * 109.47348 * 330.00008 * 24 22 20 28 28 C 1.41495 * 106.96408 * 359.97438 * 8 7 6 29 29 C 1.35037 * 124.88601 * 239.72404 * 6 3 2 30 30 C 1.50697 * 126.38415 * 0.03556 * 29 6 3 31 31 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 32 32 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 33 33 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 35 35 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 36 36 H 1.09002 * 109.47196 * 304.99671 * 3 2 1 37 37 H 1.08999 * 109.47047 * 184.99883 * 4 3 2 38 38 H 1.09006 * 109.46409 * 305.00011 * 4 3 2 39 39 H 1.09002 * 109.47325 * 300.00589 * 5 4 3 40 40 H 1.09001 * 109.46699 * 60.00329 * 5 4 3 41 41 H 1.09004 * 109.47022 * 179.97438 * 5 4 3 42 42 H 1.09002 * 110.31750 * 300.93019 * 12 11 9 43 43 H 1.09003 * 110.32044 * 63.11599 * 12 11 9 44 44 H 1.08994 * 112.08167 * 190.74280 * 15 13 12 45 45 H 1.09003 * 113.30565 * 62.75133 * 15 13 12 46 46 H 1.09001 * 110.32041 * 47.66861 * 18 16 11 47 47 H 1.08996 * 110.31803 * 169.75546 * 18 16 11 48 48 H 0.97004 * 119.99686 * 180.02562 * 23 22 20 49 49 H 1.07999 * 127.25088 * 179.97438 * 28 8 7 50 50 H 1.08997 * 109.47364 * 90.00221 * 30 29 6 51 51 H 1.09005 * 109.46993 * 210.00267 * 30 29 6 52 52 H 1.08998 * 109.47260 * 329.99598 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4444 -0.1257 5 6 3.9650 0.8735 -1.4876 6 7 1.6525 2.0976 1.2517 7 7 2.0026 1.7070 2.4244 8 6 1.4919 2.5070 3.3390 9 6 1.6634 2.3927 4.8016 10 8 1.1355 3.2008 5.5407 11 7 2.4052 1.3924 5.3170 12 6 3.1062 0.3283 4.5668 13 6 3.7858 -0.5576 5.6559 14 1 4.0685 -1.5668 5.3563 15 6 2.6762 -0.4396 6.7882 16 6 2.6796 1.1307 6.7610 17 1 2.0232 1.6310 7.4730 18 6 4.2065 1.4120 6.9147 19 7 4.8766 0.2913 6.2207 20 6 6.2248 0.0754 6.1175 21 1 6.5941 -0.7861 5.5810 22 6 7.1168 0.9637 6.7026 23 7 6.6666 2.0137 7.3560 24 14 8.9560 0.6686 6.5624 25 1 9.4733 1.3392 5.3426 26 1 9.6388 1.2226 7.7591 27 1 9.2180 -0.7903 6.4740 28 6 0.7480 3.4962 2.6533 29 6 0.8805 3.2021 1.3386 30 6 0.2765 3.9634 0.1868 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 1.6055 1.9815 -0.8419 37 1 3.9355 2.4655 -0.0366 38 1 3.9954 0.8311 0.6660 39 1 3.5943 -0.1477 -1.5767 40 1 3.5345 1.4867 -2.2793 41 1 5.0514 0.8752 -1.5774 42 1 2.3961 -0.2457 3.9715 43 1 3.8756 0.7604 3.9268 44 1 3.0204 -0.8387 7.7423 45 1 1.7134 -0.8572 6.4937 46 1 4.4663 2.3593 6.4420 47 1 4.4844 1.4269 7.9685 48 1 7.2899 2.6346 7.7645 49 1 0.1936 4.3152 3.0872 50 1 -0.7086 3.5563 -0.0410 51 1 0.1814 5.0152 0.4566 52 1 0.9197 3.8694 -0.6880 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032489166.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:48 Heat of formation + Delta-G solvation = 91.717271 kcal Electronic energy + Delta-G solvation = -32278.815502 eV Core-core repulsion = 28281.664543 eV Total energy + Delta-G solvation = -3997.150959 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.64525 -39.74352 -37.65867 -36.91990 -33.58112 -32.79952 -32.15100 -31.64630 -31.05726 -28.96824 -28.42005 -27.10577 -26.55710 -25.10447 -24.15355 -23.16618 -22.71450 -21.00415 -20.66592 -19.89823 -19.33836 -18.22075 -17.11690 -16.80058 -16.21967 -15.94995 -15.52497 -15.06944 -14.90849 -14.50578 -14.38347 -14.14873 -13.89075 -13.75999 -13.25219 -13.19135 -13.16535 -12.92494 -12.83247 -12.52307 -12.35475 -12.10936 -12.06720 -11.82893 -11.80371 -11.54952 -11.34056 -11.23459 -11.16203 -10.93380 -10.90933 -10.79392 -10.67985 -10.48484 -10.45031 -10.12750 -9.99408 -9.58651 -9.53377 -8.90732 -8.77439 -8.64506 -7.83690 -6.85085 -5.70922 -3.04804 1.89269 2.27370 2.45571 3.40113 3.44526 3.47321 3.52937 3.91396 4.09642 4.44561 4.47020 4.52252 4.57330 4.76489 4.85267 4.87785 5.02663 5.05205 5.08293 5.15864 5.27145 5.31998 5.32676 5.39314 5.45596 5.54146 5.58514 5.60673 5.66269 5.72314 5.72814 5.79015 5.79610 5.84762 5.86965 5.94624 6.01849 6.04315 6.18216 6.34977 6.41936 6.51424 6.55721 6.69062 6.70701 6.85345 6.96653 7.49448 7.58044 7.78591 8.10320 8.16151 8.24530 8.75459 9.16266 9.77199 10.47599 11.41260 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.003648 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.605911 B = 7673.166587 C = 8809.773611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C 0.151 3.849 4 C -0.136 4.136 5 C -0.149 4.149 6 N -0.276 5.276 7 N -0.244 5.244 8 C -0.005 4.005 9 C 0.612 3.388 10 O -0.553 6.553 11 N -0.592 5.592 12 C 0.100 3.900 13 C 0.139 3.861 14 H 0.104 0.896 15 C -0.155 4.155 16 C 0.099 3.901 17 H 0.112 0.888 18 C 0.176 3.824 19 N -0.595 5.595 20 C -0.229 4.229 21 H 0.080 0.920 22 C -0.006 4.006 23 N -0.919 5.919 24 Si 0.911 3.089 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C -0.182 4.182 29 C 0.001 3.999 30 C -0.081 4.081 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.047 0.953 47 H 0.056 0.944 48 H 0.253 0.747 49 H 0.157 0.843 50 H 0.074 0.926 51 H 0.083 0.917 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.126 -2.811 -18.720 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.051 3.949 4 C -0.174 4.174 5 C -0.207 4.207 6 N -0.065 5.065 7 N -0.078 5.078 8 C -0.165 4.165 9 C 0.399 3.601 10 O -0.430 6.430 11 N -0.325 5.325 12 C -0.026 4.026 13 C 0.030 3.970 14 H 0.122 0.878 15 C -0.194 4.194 16 C -0.004 4.004 17 H 0.130 0.870 18 C 0.051 3.949 19 N -0.319 5.319 20 C -0.357 4.357 21 H 0.098 0.902 22 C -0.203 4.203 23 N -0.566 5.566 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.210 4.210 29 C -0.123 4.123 30 C -0.139 4.139 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.174 0.826 50 H 0.093 0.907 51 H 0.102 0.898 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.481 -3.199 -18.508 22.551 hybrid contribution 0.598 0.808 -0.054 1.007 sum -11.883 -2.391 -18.563 22.169 Atomic orbital electron populations 1.21773 0.95204 1.02208 1.01853 1.21966 0.96652 0.94425 1.04284 1.21704 0.96812 0.94616 0.81800 1.21884 0.92852 1.03102 0.99545 1.21792 1.02167 1.01113 0.95655 1.45628 1.35366 1.19864 1.05599 1.73659 1.20296 1.24098 0.89795 1.21910 1.03465 0.97298 0.93804 1.16493 0.78486 0.80558 0.84546 1.90740 1.50562 1.42094 1.59631 1.49012 1.47726 1.26876 1.08841 1.23170 0.95007 0.89181 0.95203 1.23492 0.87918 0.94245 0.91358 0.87830 1.24478 0.98833 0.95155 1.00979 1.24360 0.99283 0.95317 0.81412 0.86969 1.21909 0.84153 0.91288 0.97587 1.45167 1.00591 1.24687 1.61445 1.19032 0.79705 1.07500 1.29440 0.90232 1.24804 0.98013 0.97218 1.00244 1.69921 1.32807 1.14340 1.39502 0.86132 0.85152 0.77444 0.77079 1.21728 1.21696 1.20657 1.21448 1.05838 1.02741 0.90938 1.21288 1.01158 0.92850 0.96983 1.20301 1.00085 0.99757 0.93762 0.92658 0.92761 0.92118 0.89849 0.89613 0.87841 0.91197 0.89714 0.91968 0.92624 0.91733 0.92424 0.91132 0.89950 0.91520 0.93496 0.92612 0.93639 0.82561 0.90708 0.89778 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.80 37.16 0.36 -0.87 16 2 C -0.14 -1.12 5.35 -26.73 -0.14 -1.27 16 3 C 0.15 1.38 2.41 -67.93 -0.16 1.22 16 4 C -0.14 -1.30 5.57 -26.73 -0.15 -1.45 16 5 C -0.15 -1.02 9.67 37.16 0.36 -0.66 16 6 N -0.28 -3.50 2.49 -50.66 -0.13 -3.63 16 7 N -0.24 -3.94 9.33 33.42 0.31 -3.63 16 8 C 0.00 -0.08 7.00 -82.77 -0.58 -0.66 16 9 C 0.61 12.97 7.90 -12.39 -0.10 12.87 16 10 O -0.55 -12.95 17.27 5.30 0.09 -12.85 16 11 N -0.59 -12.23 2.94 -157.97 -0.46 -12.69 16 12 C 0.10 1.91 4.99 -1.70 -0.01 1.90 16 13 C 0.14 2.75 5.55 -61.46 -0.34 2.40 16 14 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 15 C -0.15 -2.78 6.93 -21.21 -0.15 -2.93 16 16 C 0.10 2.05 5.18 -62.57 -0.32 1.72 16 17 H 0.11 2.24 8.06 -51.93 -0.42 1.83 16 18 C 0.18 4.42 4.79 -1.68 -0.01 4.41 16 19 N -0.60 -14.88 3.06 -155.15 -0.48 -15.36 16 20 C -0.23 -6.25 10.38 -15.06 -0.16 -6.40 16 21 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 22 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -27.42 10.56 55.49 0.59 -26.84 16 24 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C -0.18 -2.79 10.73 -39.37 -0.42 -3.21 16 29 C 0.00 0.01 6.92 -82.21 -0.57 -0.56 16 30 C -0.08 -0.61 9.92 36.00 0.36 -0.26 16 31 H 0.05 0.58 7.75 -51.93 -0.40 0.17 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 35 H 0.09 0.53 6.34 -51.93 -0.33 0.20 16 36 H 0.10 0.70 6.55 -51.93 -0.34 0.36 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.37 6.46 -51.93 -0.34 0.03 16 40 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.99 7.75 -51.93 -0.40 0.59 16 43 H 0.07 1.52 7.92 -51.93 -0.41 1.11 16 44 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.05 1.36 7.68 -51.93 -0.40 0.97 16 47 H 0.06 1.52 7.46 -51.93 -0.39 1.13 16 48 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 49 H 0.16 2.25 8.06 -52.49 -0.42 1.82 16 50 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 52 H 0.07 0.40 7.03 -51.93 -0.37 0.04 16 LS Contribution 409.92 15.07 6.18 6.18 Total: -1.00 -33.97 409.92 -9.87 -43.84 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -8.83 Total: 1.90 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -2.12 Total: 5.99 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -0.17 Total: -62.15 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.97 -9.87 -43.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032489166.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.561 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds