Wall clock time and date at job start Wed Apr 1 2020 04:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47142 * 2 1 4 4 C 1.53000 * 109.47001 * 119.99722 * 2 1 3 5 5 N 1.46500 * 109.47084 * 175.00076 * 4 2 1 6 6 C 1.35033 * 124.88386 * 124.97692 * 5 4 2 7 7 C 1.35365 * 107.23143 * 179.72358 * 6 5 4 8 8 C 1.41508 * 105.49737 * 0.41212 * 7 6 5 9 9 C 1.47711 * 126.51355 * 179.83805 * 8 7 6 10 10 O 1.21569 * 120.00231 * 352.93435 * 9 8 7 11 11 N 1.34780 * 119.99829 * 172.92693 * 9 8 7 12 12 C 1.46882 * 120.46916 * 172.83967 * 11 9 8 13 13 C 1.53336 * 108.75843 * 124.48770 * 12 11 9 14 14 C 1.52673 * 109.10984 * 52.41149 * 13 12 11 15 15 C 1.53487 * 113.61799 * 170.86809 * 14 13 12 16 16 N 1.47669 * 85.98644 * 269.02455 * 15 14 13 17 17 C 1.36935 * 134.45863 * 155.68028 * 16 15 14 18 18 H 1.07997 * 120.00150 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99968 * 0.02562 * 17 16 15 20 20 N 1.31617 * 120.00041 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99970 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47094 * 60.00397 * 21 19 17 23 23 H 1.48506 * 109.47120 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47507 * 300.00011 * 21 19 17 25 25 C 1.47673 * 91.08735 * 335.68303 * 16 15 14 26 26 C 1.52670 * 113.18235 * 302.39901 * 14 13 12 27 27 C 1.46893 * 120.46586 * 352.86621 * 11 9 8 28 28 N 1.28464 * 124.88784 * 304.97463 * 5 4 2 29 29 H 1.08997 * 109.47235 * 300.00372 * 1 2 3 30 30 H 1.09003 * 109.46279 * 60.00140 * 1 2 3 31 31 H 1.08993 * 109.46872 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47235 * 239.99628 * 2 1 3 33 33 H 1.09001 * 109.47051 * 299.99837 * 3 2 1 34 34 H 1.08997 * 109.47359 * 59.99704 * 3 2 1 35 35 H 1.09003 * 109.47441 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.46884 * 54.99797 * 4 2 1 37 37 H 1.09006 * 109.47403 * 294.99940 * 4 2 1 38 38 H 1.08010 * 126.38787 * 359.97438 * 6 5 4 39 39 H 1.07998 * 127.25506 * 180.25593 * 7 6 5 40 40 H 1.08994 * 109.58746 * 4.70757 * 12 11 9 41 41 H 1.08998 * 109.58788 * 244.27081 * 12 11 9 42 42 H 1.08994 * 109.53660 * 292.51690 * 13 12 11 43 43 H 1.09005 * 109.52755 * 172.29456 * 13 12 11 44 44 H 1.08993 * 113.79161 * 23.28960 * 15 14 13 45 45 H 1.08997 * 113.78909 * 154.75996 * 15 14 13 46 46 H 0.96993 * 120.00408 * 179.97438 * 20 19 17 47 47 H 1.09003 * 113.78694 * 270.04615 * 25 16 15 48 48 H 1.08996 * 113.79107 * 138.57662 * 25 16 15 49 49 H 1.08998 * 109.52911 * 177.49452 * 26 14 13 50 50 H 1.08995 * 109.53714 * 297.64730 * 26 14 13 51 51 H 1.09001 * 109.59286 * 115.73977 * 27 11 9 52 52 H 1.09003 * 109.71211 * 355.37108 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.3450 -0.3869 2.1479 7 6 5.6024 -0.6684 1.7329 8 6 5.4535 -1.2909 0.4708 9 6 6.5401 -1.7859 -0.3987 10 8 7.6996 -1.5613 -0.1102 11 7 6.2462 -2.4867 -1.5118 12 6 7.3036 -2.8489 -2.4648 13 6 7.2881 -4.3692 -2.6642 14 6 5.8731 -4.8109 -3.0298 15 6 5.7814 -6.2786 -3.4693 16 7 5.9978 -5.7736 -4.8400 17 6 6.4918 -6.3173 -5.9956 18 1 6.5479 -5.7191 -6.8930 19 6 6.9204 -7.6375 -6.0137 20 7 6.8515 -8.3668 -4.9202 21 14 7.5936 -8.3794 -7.5902 22 1 8.7847 -7.6095 -8.0304 23 1 7.9805 -9.7924 -7.3466 24 1 6.5515 -8.3262 -8.6469 25 6 5.4680 -4.4471 -4.4651 26 6 4.8322 -4.4193 -1.9839 27 6 4.8638 -2.8986 -1.7892 28 7 4.1607 -1.3499 0.2212 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1301 1.4426 0.0005 36 1 1.6053 -1.7197 1.2952 37 1 1.7516 -0.1582 2.1371 38 1 4.0690 0.0954 3.0741 39 1 6.5250 -0.4594 2.2539 40 1 8.2721 -2.5421 -2.0700 41 1 7.1216 -2.3534 -3.4183 42 1 7.5965 -4.8610 -1.7417 43 1 7.9730 -4.6382 -3.4684 44 1 6.5949 -6.9009 -3.0966 45 1 4.7983 -6.7233 -3.3147 46 1 7.1507 -9.2893 -4.9328 47 1 4.3918 -4.3476 -4.6064 48 1 6.0325 -3.6139 -4.8835 49 1 3.8420 -4.7225 -2.3240 50 1 5.0604 -4.9134 -1.0396 51 1 4.5108 -2.4067 -2.6956 52 1 4.2231 -2.6241 -0.9512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035715415.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:42 Heat of formation + Delta-G solvation = 105.300032 kcal Electronic energy + Delta-G solvation = -31438.595299 eV Core-core repulsion = 27442.033333 eV Total energy + Delta-G solvation = -3996.561966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.88938 -39.99658 -38.46148 -36.90358 -35.60378 -32.69817 -32.28680 -31.23040 -30.59013 -30.18681 -27.68560 -27.35970 -26.60912 -24.96917 -24.03738 -23.26848 -22.26582 -21.64303 -21.07183 -20.42404 -19.53460 -17.84291 -17.19490 -16.64844 -16.54879 -16.43087 -15.62564 -15.43707 -14.85069 -14.77197 -14.51608 -14.18698 -13.94781 -13.83807 -13.69366 -13.56409 -13.40502 -13.17969 -12.91047 -12.77236 -12.45872 -12.36332 -12.28653 -12.01456 -11.70135 -11.53801 -11.51597 -11.30228 -11.09078 -10.95121 -10.79268 -10.76288 -10.59879 -10.29002 -10.03755 -9.89234 -9.62269 -9.47017 -9.29444 -9.19212 -9.15638 -8.71273 -8.25395 -6.78017 -5.69077 -3.00496 1.50951 2.01830 2.19248 3.22269 3.43663 3.47698 3.48911 3.50171 3.93084 4.24298 4.40716 4.45323 4.52335 4.61317 4.69232 4.90937 4.99872 5.11798 5.14309 5.16484 5.25086 5.35182 5.38195 5.39144 5.44452 5.50529 5.54619 5.61739 5.61961 5.62863 5.74416 5.76876 5.80806 5.89236 6.05179 6.06158 6.09827 6.30011 6.35873 6.41836 6.44125 6.57269 6.63935 6.75890 6.79171 6.93327 7.02479 7.32363 7.47435 7.58894 7.66814 7.80742 8.06729 8.35224 9.12657 9.78754 10.70349 11.47878 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016699 B = 0.002520 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.301734 B =11108.280182 C =12113.571456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.148 4.148 4 C 0.123 3.877 5 N -0.283 5.283 6 C -0.019 4.019 7 C -0.180 4.180 8 C -0.008 4.008 9 C 0.599 3.401 10 O -0.543 6.543 11 N -0.590 5.590 12 C 0.114 3.886 13 C -0.095 4.095 14 C -0.109 4.109 15 C 0.173 3.827 16 N -0.609 5.609 17 C -0.220 4.220 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.287 1.287 25 C 0.127 3.873 26 C -0.116 4.116 27 C 0.089 3.911 28 N -0.254 5.254 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.179 0.821 39 H 0.160 0.840 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.023 0.977 46 H 0.253 0.747 47 H 0.030 0.970 48 H 0.040 0.960 49 H 0.071 0.929 50 H 0.059 0.941 51 H 0.063 0.937 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.922 19.515 16.683 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.206 4.206 4 C 0.003 3.997 5 N -0.070 5.070 6 C -0.162 4.162 7 C -0.208 4.208 8 C -0.167 4.167 9 C 0.385 3.615 10 O -0.419 6.419 11 N -0.322 5.322 12 C -0.008 4.008 13 C -0.133 4.133 14 C -0.110 4.110 15 C 0.048 3.952 16 N -0.335 5.335 17 C -0.348 4.348 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.740 3.260 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.213 1.213 25 C 0.001 3.999 26 C -0.155 4.155 27 C -0.034 4.034 28 N -0.090 5.090 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.196 0.804 39 H 0.178 0.822 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.041 0.959 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.058 0.942 49 H 0.090 0.910 50 H 0.078 0.922 51 H 0.081 0.919 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.057 19.020 15.837 27.983 hybrid contribution 0.618 -0.363 -0.351 0.798 sum -12.439 18.658 15.486 27.252 Atomic orbital electron populations 1.21785 0.93545 1.02491 1.02543 1.21454 0.96562 0.96985 0.98004 1.21843 1.01421 0.95187 1.02127 1.22188 0.73752 1.03111 1.00688 1.45742 1.07641 1.40702 1.12912 1.22828 0.89902 1.06079 0.97345 1.21749 0.97935 1.04999 0.96147 1.22016 0.90403 1.06773 0.97518 1.17023 0.86519 0.78067 0.79905 1.90761 1.19520 1.59382 1.72254 1.47936 1.09966 1.52861 1.21462 1.21736 0.91069 0.96457 0.91559 1.21472 0.96650 0.93229 1.01967 1.22386 0.94265 1.00417 0.93921 1.22227 0.98531 0.90627 0.83818 1.45955 1.71300 1.08263 1.07987 1.18967 1.33458 0.94636 0.87753 0.90518 1.24751 1.02037 0.96353 0.97359 1.69808 1.52604 1.08277 1.26210 0.86243 0.78823 0.78270 0.82680 1.21148 1.21643 1.21339 1.22579 0.95863 0.90101 0.91345 1.21810 0.99574 0.94703 0.99415 1.22484 0.82109 0.95270 1.03550 1.73360 1.05331 1.16774 1.13509 0.92400 0.91674 0.92012 0.89063 0.92030 0.92620 0.92613 0.88732 0.88033 0.80426 0.82211 0.89347 0.91380 0.92117 0.89527 0.91070 0.95888 0.93714 0.95246 0.94221 0.91028 0.92183 0.91866 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.19 37.16 0.34 -0.24 16 2 C -0.11 -0.61 2.95 -90.62 -0.27 -0.88 16 3 C -0.15 -0.88 9.08 37.16 0.34 -0.54 16 4 C 0.12 0.63 5.79 -4.04 -0.02 0.60 16 5 N -0.28 -2.42 2.86 -61.33 -0.18 -2.59 16 6 C -0.02 -0.15 11.40 -17.17 -0.20 -0.35 16 7 C -0.18 -2.00 10.81 -39.36 -0.43 -2.43 16 8 C -0.01 -0.10 6.83 -82.77 -0.57 -0.67 16 9 C 0.60 9.77 7.68 -12.39 -0.10 9.67 16 10 O -0.54 -10.25 16.34 5.31 0.09 -10.17 16 11 N -0.59 -9.25 2.94 -173.81 -0.51 -9.76 16 12 C 0.11 1.85 6.30 -3.66 -0.02 1.82 16 13 C -0.10 -1.74 5.22 -26.72 -0.14 -1.88 16 14 C -0.11 -2.05 0.77 -154.42 -0.12 -2.17 16 15 C 0.17 4.14 6.64 -3.16 -0.02 4.11 16 16 N -0.61 -15.74 3.53 -179.76 -0.64 -16.37 16 17 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.92 -27.76 11.39 55.49 0.63 -27.13 16 21 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.13 2.62 7.72 -3.14 -0.02 2.60 16 26 C -0.12 -1.82 5.26 -26.73 -0.14 -1.96 16 27 C 0.09 1.26 6.02 -3.65 -0.02 1.24 16 28 N -0.25 -2.96 8.04 33.42 0.27 -2.69 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.69 7.96 -51.93 -0.41 0.28 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.05 0.45 7.75 -51.93 -0.40 0.05 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.10 0.25 8.04 -51.93 -0.42 -0.17 16 38 H 0.18 0.72 8.06 -52.48 -0.42 0.29 16 39 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.09 1.47 6.98 -51.93 -0.36 1.10 16 41 H 0.07 1.06 7.49 -51.93 -0.39 0.68 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 1.78 8.01 -51.93 -0.42 1.36 16 44 H 0.07 1.90 7.12 -51.93 -0.37 1.53 16 45 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 46 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 48 H 0.04 0.79 7.41 -51.93 -0.38 0.41 16 49 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 50 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 52 H 0.12 1.61 4.08 -78.87 -0.32 1.29 16 LS Contribution 408.43 15.07 6.15 6.15 Total: -1.00 -34.44 408.43 -9.77 -44.21 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -8.93 Total: -1.34 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.64 Total: 2.16 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.42 Total: -58.54 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.44 -9.77 -44.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035715415.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.510 kcal (2) G-P(sol) polarization free energy of solvation -34.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds