Wall clock time and date at job start Wed Apr 1 2020 04:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46944 * 2 1 4 4 C 1.53003 * 109.47372 * 119.99715 * 2 1 3 5 5 N 1.46499 * 109.47319 * 174.02962 * 4 2 1 6 6 N 1.28441 * 125.18814 * 87.09475 * 5 4 2 7 7 C 1.30861 * 110.93024 * 179.97438 * 6 5 4 8 8 C 1.39682 * 107.85808 * 0.02562 * 7 6 5 9 9 C 1.36596 * 125.19226 * 266.79196 * 5 4 2 10 10 C 1.47166 * 126.88581 * 0.02562 * 9 5 4 11 11 O 1.21629 * 119.99587 * 331.36457 * 10 9 5 12 12 N 1.34769 * 120.00492 * 151.36471 * 10 9 5 13 13 C 1.46889 * 120.46438 * 349.87884 * 12 10 9 14 14 C 1.52857 * 109.01932 * 235.48616 * 13 12 10 15 15 C 1.52664 * 109.17629 * 307.81812 * 14 13 12 16 16 C 1.53477 * 113.62282 * 188.99267 * 15 14 13 17 17 N 1.47672 * 85.98826 * 137.70993 * 16 15 14 18 18 C 1.36933 * 134.45760 * 155.71771 * 17 16 15 19 19 H 1.08004 * 120.00044 * 179.97438 * 18 17 16 20 20 C 1.38809 * 120.00458 * 359.95070 * 18 17 16 21 21 N 1.31620 * 119.99637 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00368 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47352 * 60.00131 * 22 20 18 24 24 H 1.48503 * 109.47454 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47256 * 300.00074 * 22 20 18 26 26 C 1.47670 * 91.08271 * 335.68093 * 17 16 15 27 27 C 1.52682 * 113.18463 * 57.46362 * 15 14 13 28 28 C 1.46878 * 120.46750 * 170.15840 * 12 10 9 29 29 H 1.08993 * 109.47303 * 304.88651 * 1 2 3 30 30 H 1.09000 * 109.46718 * 64.88777 * 1 2 3 31 31 H 1.08996 * 109.46707 * 184.88630 * 1 2 3 32 32 H 1.08997 * 109.47178 * 240.00047 * 2 1 3 33 33 H 1.08997 * 109.47144 * 60.00026 * 3 2 1 34 34 H 1.09002 * 109.46730 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47155 * 299.99895 * 3 2 1 36 36 H 1.09003 * 109.46438 * 54.03116 * 4 2 1 37 37 H 1.08994 * 109.46883 * 294.03460 * 4 2 1 38 38 H 1.07995 * 126.07258 * 180.02562 * 7 6 5 39 39 H 1.07994 * 127.31534 * 180.02562 * 8 7 6 40 40 H 1.09008 * 109.58479 * 355.31562 * 13 12 10 41 41 H 1.08995 * 109.58595 * 115.74442 * 13 12 10 42 42 H 1.08998 * 109.60608 * 187.83660 * 14 13 12 43 43 H 1.09009 * 109.44326 * 67.69687 * 14 13 12 44 44 H 1.08999 * 113.79223 * 251.97438 * 16 15 14 45 45 H 1.09000 * 113.79143 * 23.43809 * 16 15 14 46 46 H 0.97001 * 119.99992 * 180.02562 * 21 20 18 47 47 H 1.08991 * 113.79176 * 270.04768 * 26 17 16 48 48 H 1.09002 * 113.78628 * 138.57659 * 26 17 16 49 49 H 1.08997 * 109.52505 * 182.51748 * 27 15 14 50 50 H 1.09002 * 109.59282 * 62.33359 * 27 15 14 51 51 H 1.09008 * 109.58724 * 244.25382 * 28 12 10 52 52 H 1.08992 * 109.59065 * 4.68591 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.4980 -0.8469 1.1796 6 7 4.3373 0.0358 1.5872 7 6 5.5680 -0.3637 1.3914 8 6 5.5188 -1.6277 0.7990 9 6 4.1723 -1.9231 0.6766 10 6 3.5846 -3.1492 0.1136 11 8 2.4976 -3.5352 0.4994 12 7 4.2508 -3.8444 -0.8293 13 6 5.4503 -3.2803 -1.4622 14 6 5.2551 -3.2689 -2.9782 15 6 4.8435 -4.6641 -3.4413 16 6 4.8316 -4.8269 -4.9674 17 7 5.4637 -6.1399 -4.7283 18 6 5.5310 -7.3139 -5.4299 19 1 6.0737 -8.1551 -5.0244 20 6 4.9012 -7.4233 -6.6621 21 7 4.2398 -6.3983 -7.1563 22 14 4.9935 -9.0246 -7.6194 23 1 4.3958 -10.1188 -6.8128 24 1 4.2450 -8.8831 -8.8942 25 1 6.4136 -9.3448 -7.9128 26 6 5.9951 -5.6791 -3.4299 27 6 3.5743 -5.1729 -2.7620 28 6 3.7841 -5.1742 -1.2430 29 1 -0.3633 0.5877 0.8429 30 1 -0.3633 0.4361 -0.9305 31 1 -0.3632 -1.0239 0.0875 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.5921 -1.7134 1.3043 37 1 1.7666 -0.1494 2.1360 38 1 6.4627 0.1862 1.6432 39 1 6.3542 -2.2454 0.5040 40 1 5.6056 -2.2613 -1.1076 41 1 6.3171 -3.8923 -1.2128 42 1 6.1878 -2.9836 -3.4649 43 1 4.4747 -2.5535 -3.2382 44 1 3.8310 -4.8920 -5.3949 45 1 5.4739 -4.1183 -5.4902 46 1 3.7993 -6.4748 -8.0171 47 1 6.9831 -5.2238 -3.4958 48 1 5.9190 -6.4214 -2.6353 49 1 3.3608 -6.1865 -3.1013 50 1 2.7382 -4.5205 -3.0138 51 1 4.5311 -5.9225 -0.9780 52 1 2.8422 -5.4025 -0.7443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035717053.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:47 Heat of formation + Delta-G solvation = 99.777683 kcal Electronic energy + Delta-G solvation = -31852.262674 eV Core-core repulsion = 27855.461241 eV Total energy + Delta-G solvation = -3996.801433 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.77271 -40.19395 -38.60819 -36.83999 -35.81618 -32.68587 -32.20512 -31.81823 -30.72940 -29.93805 -27.45102 -27.05622 -26.66602 -25.09742 -24.21871 -23.45915 -22.37989 -21.65804 -21.16179 -20.73678 -19.48130 -18.00128 -17.00909 -16.70991 -16.55385 -16.12087 -15.81716 -15.25370 -14.97604 -14.83214 -14.67245 -14.41889 -14.14184 -13.88232 -13.79004 -13.67507 -13.29586 -13.14856 -12.88906 -12.55678 -12.47069 -12.30671 -12.25236 -12.12901 -11.73389 -11.60785 -11.28657 -11.12171 -11.10369 -11.03941 -10.89602 -10.85860 -10.82978 -10.39433 -10.19483 -10.04802 -9.71561 -9.60382 -9.37428 -9.30800 -9.04108 -8.78063 -8.49690 -6.85582 -5.75624 -3.07409 1.19250 2.16117 2.47178 2.97145 3.07135 3.39338 3.43735 3.44803 4.23341 4.31226 4.39703 4.46270 4.63965 4.73997 4.93249 4.98777 5.03962 5.06725 5.20393 5.22179 5.28051 5.29582 5.34077 5.35895 5.43625 5.48568 5.55164 5.56897 5.57106 5.64769 5.67950 5.78858 5.84473 5.88473 5.93397 5.93793 6.00907 6.14830 6.24846 6.29841 6.32654 6.41167 6.58741 6.59241 6.63179 6.79950 6.84247 7.23884 7.32644 7.37672 7.58851 7.89116 7.99835 8.02908 9.05998 9.72316 10.62488 11.41203 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018278 B = 0.002583 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.494262 B =10836.223748 C =11362.751578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.147 4.147 4 C 0.114 3.886 5 N -0.253 5.253 6 N -0.278 5.278 7 C -0.007 4.007 8 C -0.194 4.194 9 C -0.029 4.029 10 C 0.589 3.411 11 O -0.546 6.546 12 N -0.587 5.587 13 C 0.094 3.906 14 C -0.118 4.118 15 C -0.109 4.109 16 C 0.173 3.827 17 N -0.609 5.609 18 C -0.222 4.222 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.910 3.090 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.127 3.873 27 C -0.095 4.095 28 C 0.115 3.885 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.185 0.815 39 H 0.164 0.836 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.025 0.975 46 H 0.253 0.747 47 H 0.031 0.969 48 H 0.040 0.960 49 H 0.088 0.912 50 H 0.060 0.940 51 H 0.072 0.928 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.375 14.538 17.324 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 C -0.204 4.204 4 C -0.006 4.006 5 N -0.041 5.041 6 N -0.110 5.110 7 C -0.182 4.182 8 C -0.223 4.223 9 C -0.158 4.158 10 C 0.375 3.625 11 O -0.424 6.424 12 N -0.319 5.319 13 C -0.028 4.028 14 C -0.157 4.157 15 C -0.111 4.111 16 C 0.048 3.952 17 N -0.335 5.335 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.740 3.260 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.213 1.213 26 C 0.001 3.999 27 C -0.134 4.134 28 C -0.006 4.006 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.116 0.884 38 H 0.202 0.798 39 H 0.182 0.818 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.063 0.937 47 H 0.049 0.951 48 H 0.058 0.942 49 H 0.107 0.893 50 H 0.079 0.921 51 H 0.090 0.910 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.813 14.985 17.663 23.333 hybrid contribution 0.888 -1.475 -1.109 2.048 sum -1.925 13.510 16.554 21.453 Atomic orbital electron populations 1.21756 0.93345 1.02582 1.02487 1.21465 0.96940 0.97149 0.97340 1.21863 1.01888 0.94837 1.01838 1.22426 0.73036 1.04824 1.00283 1.45748 1.07396 1.10058 1.40865 1.73183 1.00640 1.17736 1.19409 1.23577 0.94762 0.96057 1.03844 1.22388 0.94712 0.98592 1.06608 1.21459 0.92651 0.93125 1.08538 1.16977 0.84038 0.81992 0.79465 1.90753 1.19996 1.69896 1.61758 1.47806 1.28406 1.18577 1.37064 1.22199 0.86660 0.99918 0.94069 1.21743 1.02021 0.98064 0.93834 1.22397 0.96076 0.93094 0.99509 1.22226 0.98458 0.85793 0.88723 1.45949 1.59964 1.08982 1.18558 1.18959 1.28212 0.88348 0.99489 0.90477 1.24752 1.00546 0.97630 0.97458 1.69805 1.38176 1.29376 1.19467 0.86242 0.77467 0.82909 0.79384 1.21125 1.21614 1.21285 1.22587 0.94047 0.93556 0.89746 1.21481 0.96647 1.03060 0.92167 1.21786 1.00796 0.81702 0.96341 0.92257 0.91746 0.91902 0.90566 0.92407 0.92003 0.92470 0.86303 0.88366 0.79805 0.81813 0.88646 0.90896 0.90488 0.91960 0.91030 0.95775 0.93670 0.95128 0.94166 0.89310 0.92085 0.90992 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.19 37.16 0.34 -0.77 16 2 C -0.11 -1.02 3.12 -90.62 -0.28 -1.31 16 3 C -0.15 -1.30 8.99 37.16 0.33 -0.97 16 4 C 0.11 1.16 5.53 -4.04 -0.02 1.14 16 5 N -0.25 -2.99 3.11 -57.14 -0.18 -3.16 16 6 N -0.28 -3.19 10.64 30.59 0.33 -2.86 16 7 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 8 C -0.19 -1.97 8.59 -38.98 -0.33 -2.30 16 9 C -0.03 -0.36 6.34 -82.06 -0.52 -0.88 16 10 C 0.59 8.23 7.49 -12.64 -0.09 8.13 16 11 O -0.55 -8.85 14.45 5.25 0.08 -8.77 16 12 N -0.59 -7.71 2.95 -174.32 -0.51 -8.22 16 13 C 0.09 1.07 5.07 -3.90 -0.02 1.05 16 14 C -0.12 -1.60 5.24 -26.98 -0.14 -1.74 16 15 C -0.11 -1.88 0.77 -154.43 -0.12 -2.00 16 16 C 0.17 3.91 6.64 -3.16 -0.02 3.89 16 17 N -0.61 -14.98 3.53 -179.78 -0.64 -15.62 16 18 C -0.22 -6.11 10.70 -15.06 -0.16 -6.27 16 19 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -26.97 11.39 55.49 0.63 -26.34 16 22 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.13 2.41 7.72 -3.15 -0.02 2.39 16 27 C -0.10 -1.58 5.22 -26.72 -0.14 -1.72 16 28 C 0.12 1.63 6.30 -3.66 -0.02 1.60 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.64 6.82 -51.93 -0.35 0.29 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.12 1.35 6.09 -51.93 -0.32 1.03 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.18 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.16 1.32 6.65 -52.49 -0.35 0.97 16 40 H 0.10 0.96 4.38 -51.92 -0.23 0.73 16 41 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 42 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 43 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 44 H 0.07 1.82 7.12 -51.93 -0.37 1.45 16 45 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 46 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 48 H 0.04 0.73 7.41 -51.93 -0.38 0.35 16 49 H 0.09 1.69 8.01 -51.93 -0.42 1.27 16 50 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.07 0.97 7.49 -51.92 -0.39 0.58 16 52 H 0.09 1.31 6.99 -51.93 -0.36 0.94 16 LS Contribution 402.18 15.07 6.06 6.06 Total: -1.00 -32.14 402.18 -9.41 -41.55 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -8.62 Total: 0.72 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.53 Total: -0.32 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.37 Total: -56.20 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.08 Total: -8.77 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.14 -9.41 -41.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035717053.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.331 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds