Wall clock time and date at job start Wed Apr 1 2020 04:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47058 * 2 1 4 4 C 1.52994 * 109.47583 * 239.99625 * 2 1 3 5 5 N 1.46505 * 109.46990 * 119.99353 * 2 1 3 6 6 C 1.34261 * 125.74966 * 75.31215 * 5 2 1 7 7 C 1.38049 * 107.41388 * 180.11112 * 6 5 2 8 8 C 1.47432 * 126.41221 * 179.87087 * 7 6 5 9 9 O 1.21601 * 120.00071 * 149.42712 * 8 7 6 10 10 N 1.34781 * 119.99974 * 329.42326 * 8 7 6 11 11 C 1.46892 * 120.45805 * 173.59498 * 10 8 7 12 12 C 1.53357 * 108.73754 * 124.35133 * 11 10 8 13 13 C 1.52556 * 109.13110 * 52.25708 * 12 11 10 14 14 C 1.52959 * 114.06226 * 75.54160 * 13 12 11 15 15 N 1.47162 * 87.85519 * 139.44260 * 14 13 12 16 16 C 1.36929 * 135.99956 * 153.07606 * 15 14 13 17 17 H 1.07994 * 120.00596 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99961 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00071 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00261 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46948 * 60.00317 * 20 18 16 22 22 H 1.48497 * 109.47044 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46995 * 300.00401 * 20 18 16 24 24 C 1.47173 * 87.99568 * 333.33821 * 15 14 13 25 25 C 1.52557 * 113.43007 * 302.66684 * 13 12 11 26 26 C 1.46885 * 120.46326 * 353.57855 * 10 8 7 27 27 C 1.41282 * 107.16892 * 359.60789 * 7 6 5 28 28 N 1.30442 * 108.02705 * 0.24280 * 27 7 6 29 29 H 1.08992 * 109.47246 * 300.00390 * 1 2 3 30 30 H 1.09005 * 109.46884 * 60.00766 * 1 2 3 31 31 H 1.09000 * 109.47077 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47324 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47197 * 299.99170 * 3 2 1 34 34 H 1.09001 * 109.47422 * 59.99973 * 3 2 1 35 35 H 1.09000 * 109.46964 * 300.00131 * 4 2 1 36 36 H 1.08998 * 109.46962 * 60.00023 * 4 2 1 37 37 H 1.08995 * 109.47728 * 180.02562 * 4 2 1 38 38 H 1.07995 * 126.29441 * 359.95580 * 6 5 2 39 39 H 1.08997 * 109.59341 * 4.57202 * 11 10 8 40 40 H 1.08998 * 109.59135 * 244.12242 * 11 10 8 41 41 H 1.09003 * 109.52602 * 292.36070 * 12 11 10 42 42 H 1.08998 * 109.58870 * 172.19171 * 12 11 10 43 43 H 1.08998 * 113.49164 * 24.69386 * 14 13 12 44 44 H 1.09007 * 113.48700 * 254.19170 * 14 13 12 45 45 H 0.96996 * 120.00347 * 179.97438 * 19 18 16 46 46 H 1.08997 * 113.48659 * 141.41823 * 24 15 14 47 47 H 1.09004 * 113.48440 * 271.91987 * 24 15 14 48 48 H 1.08996 * 109.52672 * 177.21106 * 25 13 12 49 49 H 1.08995 * 109.52945 * 297.42765 * 25 13 12 50 50 H 1.08996 * 109.58762 * 355.42210 * 26 10 8 51 51 H 1.09003 * 109.59271 * 115.86719 * 26 10 8 52 52 H 1.08008 * 125.98787 * 180.24050 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1963 6 6 2.0193 -2.0191 1.3897 7 6 2.5575 -2.2544 2.6389 8 6 2.7521 -3.5705 3.2743 9 8 3.6722 -3.7406 4.0510 10 7 1.9102 -4.5851 2.9943 11 6 2.1738 -5.9352 3.5095 12 6 0.9490 -6.4077 4.3023 13 6 -0.2982 -6.2465 3.4387 14 6 -0.4407 -7.3062 2.3450 15 7 -1.8793 -7.3501 2.6519 16 6 -3.0237 -7.6587 1.9664 17 1 -2.9684 -7.9590 0.9305 18 6 -4.2550 -7.5867 2.6033 19 7 -4.3225 -7.2212 3.8659 20 14 -5.8163 -8.0084 1.6683 21 1 -5.7422 -9.4119 1.1886 22 1 -6.9883 -7.8543 2.5671 23 1 -5.9594 -7.0950 0.5063 24 6 -1.5488 -6.9103 4.0170 25 6 -0.5192 -4.8173 2.9531 26 6 0.7162 -4.3560 2.1701 27 6 2.8926 -0.9982 3.1920 28 7 2.5683 -0.0770 2.3273 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6768 -1.7489 -1.2491 36 1 1.6768 -0.2075 -2.1391 37 1 3.1300 -0.7217 -1.2489 38 1 1.6621 -2.7662 0.6965 39 1 3.0460 -5.9132 4.1629 40 1 2.3549 -6.6151 2.6771 41 1 0.8464 -5.8074 5.2063 42 1 1.0715 -7.4563 4.5734 43 1 0.0803 -8.2366 2.5709 44 1 -0.2209 -6.9311 1.3454 45 1 -5.1829 -7.1705 4.3108 46 1 -2.2656 -6.2008 4.4303 47 1 -1.3288 -7.7332 4.6972 48 1 -1.3947 -4.7841 2.3047 49 1 -0.6736 -4.1612 3.8096 50 1 0.6283 -3.2940 1.9413 51 1 0.7961 -4.9261 1.2445 52 1 3.3391 -0.8302 4.1610 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035741834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:56 Heat of formation + Delta-G solvation = 106.038894 kcal Electronic energy + Delta-G solvation = -31716.246381 eV Core-core repulsion = 27719.716455 eV Total energy + Delta-G solvation = -3996.529926 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.75496 -40.04138 -38.55990 -37.01295 -35.68819 -32.62728 -31.67188 -30.92123 -30.38165 -29.74283 -27.90540 -27.78716 -26.87932 -24.93388 -24.13744 -23.32299 -22.85469 -22.00923 -20.89172 -20.14849 -19.08901 -17.83379 -16.88239 -16.67951 -16.37648 -15.76322 -15.64318 -14.99967 -14.87659 -14.82989 -14.58777 -14.38542 -13.93265 -13.80041 -13.63844 -13.55833 -13.24279 -12.77434 -12.77158 -12.68554 -12.56286 -12.48367 -12.21894 -12.18447 -12.10007 -11.68840 -11.63741 -11.60079 -11.07491 -11.05183 -10.89127 -10.82774 -10.80290 -10.41604 -10.24518 -9.74433 -9.71551 -9.61978 -9.56372 -9.17908 -8.81121 -8.74991 -8.29691 -6.86454 -5.76759 -3.08756 1.43445 2.08325 2.19507 3.14088 3.37179 3.41632 3.43268 3.45112 3.97272 4.26851 4.38000 4.44020 4.44855 4.58753 4.88244 4.99113 5.02243 5.06313 5.08689 5.20132 5.21284 5.24295 5.29417 5.34371 5.36284 5.39576 5.42890 5.49046 5.55335 5.58021 5.63511 5.70341 5.73665 5.80924 5.86856 5.92358 6.06455 6.20888 6.31127 6.36754 6.39151 6.53826 6.62268 6.66458 6.72233 6.83540 6.88044 7.23580 7.37521 7.44375 7.57456 7.62357 7.97926 8.38074 9.03585 9.70378 10.66177 11.40495 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.003062 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.240903 B = 9141.626743 C =10915.458391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.176 3.824 3 C -0.143 4.143 4 C -0.163 4.163 5 N -0.349 5.349 6 C 0.095 3.905 7 C -0.282 4.282 8 C 0.594 3.406 9 O -0.552 6.552 10 N -0.602 5.602 11 C 0.118 3.882 12 C -0.114 4.114 13 C -0.114 4.114 14 C 0.128 3.872 15 N -0.608 5.608 16 C -0.217 4.217 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.910 3.090 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.166 3.834 25 C -0.093 4.093 26 C 0.098 3.902 27 C 0.099 3.901 28 N -0.297 5.297 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.184 0.816 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.030 0.970 44 H 0.035 0.965 45 H 0.254 0.746 46 H 0.069 0.931 47 H 0.024 0.976 48 H 0.086 0.914 49 H 0.060 0.940 50 H 0.086 0.914 51 H 0.068 0.932 52 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.523 14.659 -8.480 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.093 3.907 3 C -0.201 4.201 4 C -0.221 4.221 5 N -0.129 5.129 6 C -0.056 4.056 7 C -0.297 4.297 8 C 0.383 3.617 9 O -0.430 6.430 10 N -0.335 5.335 11 C -0.005 4.005 12 C -0.153 4.153 13 C -0.115 4.115 14 C 0.001 3.999 15 N -0.334 5.334 16 C -0.345 4.345 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.041 3.959 25 C -0.131 4.131 26 C -0.025 4.025 27 C -0.088 4.088 28 N -0.117 5.117 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.201 0.799 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.041 0.959 48 H 0.105 0.895 49 H 0.079 0.921 50 H 0.104 0.896 51 H 0.086 0.914 52 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 13.540 15.856 -8.499 22.516 hybrid contribution -1.090 -1.481 -0.260 1.858 sum 12.450 14.375 -8.760 20.937 Atomic orbital electron populations 1.22299 0.92325 1.03711 1.03734 1.20873 0.94795 0.93911 0.81078 1.21912 1.02172 0.92722 1.03260 1.22286 1.02430 1.01278 0.96087 1.48831 1.45846 1.04083 1.14102 1.23196 0.97708 0.86904 0.97744 1.20309 1.17027 0.95018 0.97344 1.17337 0.81381 0.82552 0.80461 1.90736 1.32821 1.83048 1.36431 1.47915 1.24355 1.09158 1.52040 1.21601 0.98837 0.81677 0.98339 1.21727 0.93879 1.01313 0.98369 1.22064 0.96068 0.94956 0.98446 1.22393 0.87096 0.94635 0.95732 1.45563 0.99511 1.79332 1.08975 1.18858 0.82544 1.39336 0.93734 0.90369 1.24771 0.97356 1.02154 0.96111 1.69818 1.23957 1.53021 1.09794 0.86237 0.82930 0.78219 0.78584 1.21255 1.21587 1.21135 1.22038 0.90555 0.95036 0.88312 1.21400 0.96773 0.94858 1.00095 1.22199 0.84881 1.01403 0.93995 1.23939 0.96898 0.88842 0.99113 1.77155 1.18286 1.21855 0.94379 0.91300 0.90089 0.91337 0.91601 0.90823 0.90831 0.91333 0.89736 0.91378 0.79933 0.89357 0.91593 0.91765 0.90833 0.95223 0.94685 0.93644 0.91263 0.95877 0.89506 0.92079 0.89646 0.91365 0.79296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.72 37.16 0.32 -0.75 16 2 C 0.18 1.27 1.23 -131.82 -0.16 1.11 16 3 C -0.14 -0.96 8.07 37.16 0.30 -0.66 16 4 C -0.16 -0.89 8.28 37.15 0.31 -0.58 16 5 N -0.35 -3.52 3.41 -48.11 -0.16 -3.69 16 6 C 0.10 0.99 8.16 -16.56 -0.14 0.86 16 7 C -0.28 -3.62 5.53 -105.07 -0.58 -4.20 16 8 C 0.59 8.89 7.61 -12.51 -0.10 8.79 16 9 O -0.55 -9.90 16.44 5.28 0.09 -9.81 16 10 N -0.60 -8.33 2.94 -173.89 -0.51 -8.85 16 11 C 0.12 1.62 6.35 -3.64 -0.02 1.60 16 12 C -0.11 -1.72 5.30 -26.77 -0.14 -1.86 16 13 C -0.11 -2.01 0.84 -155.02 -0.13 -2.14 16 14 C 0.13 2.48 7.63 -8.21 -0.06 2.42 16 15 N -0.61 -15.05 3.55 -184.67 -0.66 -15.70 16 16 C -0.22 -5.93 10.74 -15.06 -0.16 -6.09 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.92 -26.91 11.52 55.49 0.64 -26.28 16 20 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.17 3.81 6.54 -8.22 -0.05 3.76 16 25 C -0.09 -1.50 5.27 -26.77 -0.14 -1.65 16 26 C 0.10 1.24 5.19 -3.65 -0.02 1.23 16 27 C 0.10 1.23 11.95 -16.99 -0.20 1.03 16 28 N -0.30 -3.59 11.56 30.86 0.36 -3.23 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.58 8.03 -51.93 -0.42 0.16 16 35 H 0.07 0.36 7.33 -51.93 -0.38 -0.03 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.18 1.49 5.96 -52.49 -0.31 1.17 16 39 H 0.09 1.26 6.97 -51.93 -0.36 0.90 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.07 8.10 -51.93 -0.42 0.64 16 43 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 44 H 0.03 0.64 7.53 -51.93 -0.39 0.25 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.07 1.78 7.11 -51.93 -0.37 1.41 16 47 H 0.02 0.55 8.09 -51.93 -0.42 0.13 16 48 H 0.09 1.60 7.95 -51.93 -0.41 1.18 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.09 0.96 4.12 -51.93 -0.21 0.75 16 51 H 0.07 0.81 7.60 -51.93 -0.39 0.41 16 52 H 0.19 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 405.69 15.07 6.11 6.11 Total: -1.00 -33.55 405.69 -8.94 -42.49 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -8.71 Total: -0.31 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.07 Total: 2.56 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.34 Total: -57.74 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.55 -8.94 -42.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035741834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.530 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds