Wall clock time and date at job start Wed Apr 1 2020 04:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47174 * 2 1 4 4 C 1.53003 * 109.46907 * 120.00113 * 2 1 3 5 5 N 1.46497 * 109.46994 * 175.00206 * 4 2 1 6 6 C 1.34256 * 125.75753 * 125.00156 * 5 4 2 7 7 C 1.38045 * 107.42040 * 179.97438 * 6 5 4 8 8 C 1.47421 * 126.41518 * 179.97438 * 7 6 5 9 9 O 1.21608 * 120.00143 * 28.55168 * 8 7 6 10 10 N 1.34778 * 120.00267 * 208.27324 * 8 7 6 11 11 C 1.46876 * 120.46961 * 179.97438 * 10 8 7 12 12 C 1.52857 * 109.01929 * 235.49269 * 11 10 8 13 13 C 1.52673 * 109.17457 * 307.81476 * 12 11 10 14 14 C 1.53481 * 113.62330 * 188.99524 * 13 12 11 15 15 N 1.47666 * 85.98647 * 137.71044 * 14 13 12 16 16 C 1.36941 * 134.45758 * 155.71358 * 15 14 13 17 17 H 1.07997 * 119.99886 * 187.37999 * 16 15 14 18 18 C 1.38813 * 119.99856 * 7.38229 * 16 15 14 19 19 N 1.31617 * 120.00120 * 354.86088 * 18 16 15 20 20 Si 1.86794 * 119.99981 * 174.86267 * 18 16 15 21 21 H 1.48507 * 109.47325 * 94.97639 * 20 18 16 22 22 H 1.48503 * 109.47402 * 214.97974 * 20 18 16 23 23 H 1.48500 * 109.47321 * 334.98032 * 20 18 16 24 24 C 1.47666 * 91.08895 * 335.68100 * 15 14 13 25 25 C 1.52674 * 113.18053 * 57.46712 * 13 12 11 26 26 C 1.46881 * 120.46096 * 0.22611 * 10 8 7 27 27 C 1.41295 * 107.16753 * 0.21937 * 7 6 5 28 28 N 1.30450 * 108.02258 * 359.62265 * 27 7 6 29 29 H 1.09003 * 109.47217 * 300.00090 * 1 2 3 30 30 H 1.09001 * 109.46744 * 60.00013 * 1 2 3 31 31 H 1.08999 * 109.47440 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47058 * 239.99281 * 2 1 3 33 33 H 1.09001 * 109.47275 * 299.99662 * 3 2 1 34 34 H 1.09003 * 109.47122 * 59.99852 * 3 2 1 35 35 H 1.09002 * 109.47326 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47532 * 54.99641 * 4 2 1 37 37 H 1.09004 * 109.46968 * 294.99898 * 4 2 1 38 38 H 1.08008 * 126.28735 * 0.02562 * 6 5 4 39 39 H 1.09003 * 109.59168 * 355.31605 * 11 10 8 40 40 H 1.09001 * 109.58972 * 115.74892 * 11 10 8 41 41 H 1.09003 * 109.60970 * 187.84498 * 12 11 10 42 42 H 1.09000 * 109.45039 * 67.69801 * 12 11 10 43 43 H 1.09007 * 113.78947 * 251.97880 * 14 13 12 44 44 H 1.08998 * 113.79184 * 23.44351 * 14 13 12 45 45 H 0.96999 * 120.00556 * 180.02562 * 19 18 16 46 46 H 1.08999 * 113.79095 * 270.05479 * 24 15 14 47 47 H 1.09003 * 113.79142 * 138.57648 * 24 15 14 48 48 H 1.09001 * 109.52862 * 182.52093 * 25 13 12 49 49 H 1.08996 * 109.59415 * 62.33342 * 25 13 12 50 50 H 1.09003 * 109.58502 * 244.25565 * 26 10 8 51 51 H 1.09001 * 109.59274 * 4.67885 * 26 10 8 52 52 H 1.07994 * 125.98506 * 179.77070 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.3559 -0.3964 2.1314 7 6 5.6323 -0.6848 1.6917 8 6 6.8900 -0.3911 2.4025 9 8 6.9048 -0.3428 3.6175 10 7 8.0247 -0.1818 1.7060 11 6 9.2834 0.1121 2.4037 12 6 9.8524 1.4273 1.8718 13 6 9.9275 1.3616 0.3484 14 6 10.6848 2.5386 -0.2815 15 7 11.3042 1.5319 -1.1665 16 6 11.8754 1.5701 -2.4105 17 1 12.1590 0.6517 -2.9029 18 6 12.0899 2.7893 -3.0385 19 7 11.6535 3.9006 -2.4847 20 14 12.9978 2.8526 -4.6697 21 1 12.0154 2.8533 -5.7834 22 1 13.8178 4.0892 -4.7322 23 1 13.8820 1.6657 -4.7906 24 6 11.0616 0.4674 -0.1722 25 6 8.5781 1.0807 -0.3083 26 6 8.0188 -0.2389 0.2383 27 6 5.5078 -1.3089 0.4302 28 7 4.2376 -1.3926 0.1449 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 -0.0005 36 1 1.6053 -1.7198 1.2952 37 1 1.7516 -0.1583 2.1370 38 1 4.0939 0.0857 3.0617 39 1 9.0956 0.2032 3.4735 40 1 9.9976 -0.6913 2.2231 41 1 10.8510 1.5852 2.2794 42 1 9.2029 2.2505 2.1695 43 1 10.0411 3.2466 -0.8037 44 1 11.3891 3.0213 0.3960 45 1 11.8030 4.7526 -2.9237 46 1 11.8779 0.3346 0.5379 47 1 10.7173 -0.4708 -0.6074 48 1 8.7076 1.0020 -1.3877 49 1 7.8858 1.8917 -0.0824 50 1 8.6422 -1.0676 -0.0976 51 1 6.9983 -0.3790 -0.1179 52 1 6.3215 -1.6579 -0.1882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035829085.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:00 Heat of formation + Delta-G solvation = 103.855004 kcal Electronic energy + Delta-G solvation = -31146.681284 eV Core-core repulsion = 27150.056657 eV Total energy + Delta-G solvation = -3996.624627 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.69060 -39.96623 -38.42606 -36.83156 -35.64205 -32.84866 -32.28185 -31.21101 -30.36846 -30.03526 -27.61990 -27.15102 -26.63010 -25.02203 -23.98749 -23.31505 -22.18206 -21.73471 -20.90882 -20.31073 -19.48605 -17.96225 -16.99843 -16.66572 -16.29466 -16.12205 -15.73321 -15.07315 -15.01455 -14.82640 -14.72079 -14.53986 -13.92120 -13.76062 -13.55262 -13.50395 -13.35850 -13.21074 -12.77230 -12.73725 -12.46125 -12.23408 -12.14689 -12.02068 -11.68300 -11.58953 -11.47329 -11.38772 -11.04443 -11.03448 -10.94152 -10.81747 -10.80664 -10.35264 -10.15718 -9.74191 -9.70556 -9.56810 -9.46261 -9.28121 -8.80974 -8.73928 -8.28614 -6.80562 -5.74904 -3.05203 1.45167 2.08275 2.11389 3.13271 3.39982 3.45199 3.45967 3.47582 3.99710 4.30818 4.45346 4.49043 4.53522 4.63504 4.77878 4.87319 4.97939 5.06328 5.10636 5.13998 5.19528 5.23880 5.28695 5.37424 5.40844 5.41551 5.45759 5.50302 5.60960 5.64299 5.68225 5.75298 5.82458 5.87459 5.91858 5.97444 6.07964 6.19915 6.27256 6.34554 6.40556 6.57734 6.62359 6.66278 6.73137 6.87232 6.90284 7.29295 7.37232 7.41147 7.62269 7.63102 8.02015 8.37456 9.08376 9.74605 10.66777 11.42819 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.002591 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.856417 B =10803.163104 C =12266.898701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.134 3.866 5 N -0.358 5.358 6 C 0.120 3.880 7 C -0.284 4.284 8 C 0.594 3.406 9 O -0.559 6.559 10 N -0.597 5.597 11 C 0.117 3.883 12 C -0.117 4.117 13 C -0.109 4.109 14 C 0.177 3.823 15 N -0.610 5.610 16 C -0.221 4.221 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.906 3.094 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.126 3.874 25 C -0.096 4.096 26 C 0.085 3.915 27 C 0.071 3.929 28 N -0.293 5.293 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.183 0.817 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.026 0.974 45 H 0.253 0.747 46 H 0.031 0.969 47 H 0.040 0.960 48 H 0.086 0.914 49 H 0.059 0.941 50 H 0.071 0.929 51 H 0.099 0.901 52 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.104 -8.810 9.266 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.206 4.206 4 C 0.013 3.987 5 N -0.137 5.137 6 C -0.031 4.031 7 C -0.299 4.299 8 C 0.383 3.617 9 O -0.439 6.439 10 N -0.329 5.329 11 C -0.005 4.005 12 C -0.156 4.156 13 C -0.110 4.110 14 C 0.052 3.948 15 N -0.336 5.336 16 C -0.349 4.349 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.736 3.264 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.000 4.000 25 C -0.134 4.134 26 C -0.037 4.037 27 C -0.116 4.116 28 N -0.113 5.113 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.200 0.800 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.063 0.937 46 H 0.049 0.951 47 H 0.058 0.942 48 H 0.104 0.896 49 H 0.078 0.922 50 H 0.089 0.911 51 H 0.117 0.883 52 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -21.982 -9.018 8.744 25.318 hybrid contribution 1.420 0.536 -0.382 1.565 sum -20.562 -8.483 8.362 23.763 Atomic orbital electron populations 1.21791 0.93809 1.02198 1.02556 1.21431 0.96240 0.97074 0.98103 1.21844 1.01619 0.95054 1.02132 1.21979 0.74001 1.02411 1.00292 1.48514 1.06808 1.44229 1.14152 1.22870 0.88900 0.96619 0.94677 1.20226 0.93570 1.16927 0.99215 1.17272 0.82293 0.75984 0.86138 1.90734 1.85867 1.53796 1.13484 1.47855 1.08459 1.69356 1.07231 1.21501 0.84128 0.97412 0.97466 1.21737 1.01006 0.96685 0.96204 1.22391 0.94969 1.01152 0.92518 1.22151 0.92088 0.91213 0.89396 1.45967 1.69979 1.04579 1.13038 1.18999 1.32857 0.92649 0.90369 0.90409 1.24805 1.01321 0.95260 0.99014 1.69835 1.49995 0.97268 1.39500 0.86194 0.79623 0.77033 0.83504 1.21675 1.21707 1.20682 1.22599 0.93488 0.92979 0.90914 1.21479 0.95131 0.95644 1.01120 1.22522 1.02801 0.99383 0.78995 1.24450 0.94477 0.97836 0.94827 1.77171 1.04261 1.19743 1.10105 0.92346 0.91777 0.92278 0.89346 0.92067 0.92608 0.92453 0.89364 0.88391 0.79955 0.89469 0.91557 0.90786 0.91949 0.91628 0.95582 0.93734 0.95147 0.94211 0.89579 0.92181 0.91086 0.88333 0.78261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.19 37.16 0.34 -0.30 16 2 C -0.11 -0.69 3.00 -90.62 -0.27 -0.96 16 3 C -0.15 -1.08 9.08 37.15 0.34 -0.75 16 4 C 0.13 0.82 5.88 -4.04 -0.02 0.80 16 5 N -0.36 -3.40 3.10 -60.81 -0.19 -3.59 16 6 C 0.12 1.24 11.36 -16.56 -0.19 1.05 16 7 C -0.28 -3.53 5.70 -105.07 -0.60 -4.12 16 8 C 0.59 8.73 7.64 -12.52 -0.10 8.64 16 9 O -0.56 -9.75 16.40 5.27 0.09 -9.66 16 10 N -0.60 -8.33 2.95 -174.19 -0.51 -8.84 16 11 C 0.12 1.63 6.28 -3.91 -0.02 1.61 16 12 C -0.12 -1.78 5.24 -26.97 -0.14 -1.92 16 13 C -0.11 -1.94 0.77 -154.42 -0.12 -2.06 16 14 C 0.18 4.08 6.53 -3.16 -0.02 4.06 16 15 N -0.61 -15.27 3.53 -179.79 -0.63 -15.90 16 16 C -0.22 -6.13 10.69 -15.06 -0.16 -6.29 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.92 -27.21 11.54 55.49 0.64 -26.57 16 20 Si 0.91 22.09 29.56 -169.99 -5.02 17.07 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 C 0.13 2.49 7.73 -3.15 -0.02 2.46 16 25 C -0.10 -1.54 5.22 -26.70 -0.14 -1.68 16 26 C 0.09 1.11 5.36 -3.63 -0.02 1.09 16 27 C 0.07 0.80 9.68 -16.98 -0.16 0.64 16 28 N -0.29 -3.38 12.24 30.86 0.38 -3.00 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.72 8.04 -51.93 -0.42 0.30 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.55 7.75 -51.93 -0.40 0.15 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.38 8.06 -51.93 -0.42 -0.03 16 38 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16 39 H 0.09 1.25 6.97 -51.93 -0.36 0.89 16 40 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 41 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 1.68 7.36 -51.93 -0.38 1.30 16 44 H 0.03 0.63 8.09 -51.93 -0.42 0.21 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 46 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 47 H 0.04 0.74 7.41 -51.93 -0.38 0.36 16 48 H 0.09 1.58 8.01 -51.93 -0.42 1.16 16 49 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.07 0.88 7.49 -51.93 -0.39 0.49 16 51 H 0.10 1.14 3.29 -51.93 -0.17 0.97 16 52 H 0.20 1.91 5.97 -52.49 -0.31 1.59 16 LS Contribution 407.55 15.07 6.14 6.14 Total: -1.00 -33.97 407.55 -9.21 -43.19 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.69 Total: -0.79 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.41 Total: 1.96 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.32 Total: -57.90 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.97 -9.21 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035829085.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.041 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds