Wall clock time and date at job start Wed Apr 1 2020 04:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46847 * 2 1 4 4 C 1.53001 * 109.47122 * 240.00248 * 2 1 3 5 5 N 1.46496 * 109.47426 * 120.00216 * 2 1 3 6 6 C 1.35033 * 124.88767 * 75.02550 * 5 2 1 7 7 C 1.35365 * 107.23063 * 180.02562 * 6 5 2 8 8 C 1.41500 * 105.50387 * 359.97438 * 7 6 5 9 9 C 1.47706 * 126.52096 * 180.02562 * 8 7 6 10 10 O 1.21579 * 119.99630 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00293 * 179.97438 * 9 8 7 12 12 C 1.44211 * 115.76151 * 359.75069 * 11 9 8 13 13 C 1.51808 * 112.78331 * 185.98487 * 12 11 9 14 14 C 1.50985 * 111.99859 * 324.62384 * 13 12 11 15 15 H 1.09004 * 108.32548 * 180.08166 * 14 13 12 16 16 C 1.53981 * 111.97400 * 59.89146 * 14 13 12 17 17 H 1.09005 * 112.97282 * 75.44003 * 16 14 13 18 18 C 1.56274 * 99.75696 * 195.21501 * 16 14 13 19 19 C 1.54650 * 102.20461 * 38.87301 * 18 16 14 20 20 N 1.46658 * 113.21816 * 301.07267 * 14 13 12 21 21 C 1.36943 * 126.19869 * 330.15398 * 20 14 13 22 22 H 1.08002 * 119.99698 * 359.97342 * 21 20 14 23 23 C 1.38807 * 119.99941 * 179.97438 * 21 20 14 24 24 N 1.31618 * 120.00147 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99967 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46982 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47502 * 119.99721 * 25 23 21 28 28 H 1.48502 * 109.47013 * 239.99977 * 25 23 21 29 29 C 1.43526 * 115.75971 * 179.97438 * 11 9 8 30 30 N 1.28474 * 124.88476 * 255.02716 * 5 2 1 31 31 H 1.09000 * 109.46693 * 299.99903 * 1 2 3 32 32 H 1.08995 * 109.47189 * 60.00116 * 1 2 3 33 33 H 1.09000 * 109.46536 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46946 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47428 * 299.99999 * 3 2 1 36 36 H 1.09000 * 109.47395 * 60.00526 * 3 2 1 37 37 H 1.09000 * 109.47004 * 300.00190 * 4 2 1 38 38 H 1.09003 * 109.46797 * 59.99599 * 4 2 1 39 39 H 1.08996 * 109.47163 * 179.97438 * 4 2 1 40 40 H 1.08004 * 126.38146 * 359.96299 * 6 5 2 41 41 H 1.08000 * 127.24685 * 180.02562 * 7 6 5 42 42 H 1.08992 * 108.82974 * 307.04608 * 12 11 9 43 43 H 1.09009 * 108.82952 * 65.35674 * 12 11 9 44 44 H 1.08996 * 109.09093 * 203.86896 * 13 12 11 45 45 H 1.08997 * 108.72038 * 85.13099 * 13 12 11 46 46 H 1.08998 * 110.85512 * 157.05719 * 18 16 14 47 47 H 1.09000 * 110.85529 * 280.69798 * 18 16 14 48 48 H 1.08997 * 109.96091 * 95.29112 * 19 18 16 49 49 H 1.08996 * 109.96441 * 216.51174 * 19 18 16 50 50 H 0.97004 * 119.99918 * 180.02562 * 24 23 21 51 51 H 1.08998 * 108.16876 * 302.26967 * 29 11 9 52 52 H 1.08996 * 108.16858 * 58.86220 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0061 -2.0291 1.3743 7 6 2.5356 -2.2760 2.5953 8 6 2.8626 -1.0070 3.1294 9 6 3.4720 -0.7387 4.4478 10 8 3.7413 -1.6616 5.1921 11 7 3.7295 0.5290 4.8258 12 6 3.3790 1.5513 3.8709 13 6 3.8279 2.9362 4.3010 14 6 3.7303 3.1236 5.7960 15 1 4.0637 4.1329 6.0374 16 6 4.6025 2.1117 6.5616 17 1 5.6650 2.3527 6.5253 18 6 3.9987 2.2722 7.9941 19 6 2.4889 2.4264 7.6970 20 7 2.3719 2.9331 6.3150 21 6 1.2062 3.1803 5.6403 22 1 1.2374 3.5524 4.6269 23 6 -0.0154 2.9528 6.2589 24 7 -0.0534 2.4990 7.4938 25 14 -1.6056 3.2893 5.3382 26 1 -1.2922 3.7898 3.9756 27 1 -2.3936 2.0348 5.2362 28 1 -2.3950 4.3116 6.0711 29 6 4.3214 0.6849 6.1241 30 7 2.5201 -0.1099 2.2265 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 -1.0277 0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 -1.7488 -1.2493 38 1 1.6766 -0.2073 -2.1392 39 1 3.1300 -0.7208 -1.2495 40 1 1.6408 -2.7653 0.6735 41 1 2.6791 -3.2388 3.0631 42 1 3.8399 1.3107 2.9130 43 1 2.2962 1.5593 3.7456 44 1 3.2041 3.6821 3.8084 45 1 4.8633 3.0800 3.9922 46 1 4.1870 1.3834 8.5963 47 1 4.3911 3.1638 8.4830 48 1 1.9922 1.4600 7.7825 49 1 2.0433 3.1366 8.3935 50 1 -0.9071 2.3396 7.9259 51 1 3.6566 0.2288 6.8576 52 1 5.2619 0.1342 6.1371 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036726971.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:01 Heat of formation + Delta-G solvation = 90.870337 kcal Electronic energy + Delta-G solvation = -33272.412093 eV Core-core repulsion = 29275.224409 eV Total energy + Delta-G solvation = -3997.187684 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.60741 -40.00868 -37.99701 -36.85996 -34.91358 -32.86679 -31.73177 -30.77561 -30.72911 -29.26296 -27.79273 -27.68354 -27.43561 -25.27151 -24.34006 -22.88401 -22.52823 -21.58975 -19.99761 -19.71993 -19.27329 -17.86443 -17.04325 -16.43344 -16.24881 -16.07126 -15.53665 -15.41010 -14.65155 -14.48690 -14.27545 -14.03821 -13.84655 -13.69864 -13.51937 -13.11474 -12.91960 -12.80454 -12.63498 -12.57199 -12.31981 -12.25506 -12.04687 -11.98833 -11.48226 -11.44879 -11.36789 -11.31731 -11.15657 -10.86208 -10.76228 -10.64561 -10.37148 -10.08169 -9.78578 -9.75372 -9.62335 -9.57842 -9.37797 -8.99843 -8.86127 -8.54882 -7.81761 -6.75165 -5.64961 -2.96400 1.93113 2.35145 2.47215 3.40387 3.43730 3.48048 3.63809 3.88546 4.16505 4.43273 4.52676 4.54098 4.77952 4.83255 5.10439 5.16014 5.20900 5.29188 5.33075 5.39406 5.41175 5.42598 5.49835 5.55065 5.62216 5.64116 5.64810 5.74810 5.85022 5.87537 5.90259 5.94342 6.05401 6.08906 6.13471 6.20316 6.39147 6.41201 6.45408 6.59710 6.65203 6.68288 6.78118 6.87334 6.96262 7.01771 7.38051 7.61900 7.69108 7.88705 7.91207 8.17661 8.30779 8.74857 9.26576 9.89204 10.57427 11.47778 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009845 B = 0.004934 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.502477 B = 5673.422409 C = 7114.983274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.169 3.831 3 C -0.149 4.149 4 C -0.157 4.157 5 N -0.279 5.279 6 C -0.024 4.024 7 C -0.181 4.181 8 C -0.011 4.011 9 C 0.585 3.415 10 O -0.548 6.548 11 N -0.561 5.561 12 C 0.134 3.866 13 C -0.125 4.125 14 C 0.171 3.829 15 H 0.024 0.976 16 C -0.113 4.113 17 H 0.081 0.919 18 C -0.143 4.143 19 C 0.177 3.823 20 N -0.590 5.590 21 C -0.214 4.214 22 H 0.077 0.923 23 C -0.008 4.008 24 N -0.919 5.919 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.292 1.292 29 C 0.145 3.855 30 N -0.243 5.243 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.173 0.827 41 H 0.157 0.843 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.046 0.954 49 H 0.041 0.959 50 H 0.250 0.750 51 H 0.068 0.932 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.545 -4.740 -16.628 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 C -0.206 4.206 4 C -0.215 4.215 5 N -0.068 5.068 6 C -0.167 4.167 7 C -0.209 4.209 8 C -0.171 4.171 9 C 0.371 3.629 10 O -0.426 6.426 11 N -0.290 5.290 12 C 0.011 3.989 13 C -0.163 4.163 14 C 0.063 3.937 15 H 0.041 0.959 16 C -0.133 4.133 17 H 0.099 0.901 18 C -0.181 4.181 19 C 0.052 3.948 20 N -0.316 5.316 21 C -0.342 4.342 22 H 0.095 0.905 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.734 3.266 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.219 1.219 29 C 0.022 3.978 30 N -0.078 5.078 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.190 0.810 41 H 0.175 0.825 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.086 0.914 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.395 -3.930 -16.473 18.103 hybrid contribution -1.139 -0.732 -0.288 1.384 sum 5.256 -4.662 -16.761 18.174 Atomic orbital electron populations 1.22265 0.92363 1.03314 1.04012 1.20975 0.95026 0.94070 0.81231 1.21984 1.02266 0.92541 1.03835 1.22216 1.02385 1.01000 0.95901 1.45947 1.42916 1.04680 1.13256 1.22626 1.07617 0.86504 0.99917 1.21691 1.05654 0.98680 0.94871 1.21942 1.07580 0.91369 0.96202 1.17092 0.78561 0.83217 0.84032 1.90727 1.54183 1.44246 1.53429 1.46193 1.59600 1.06182 1.17030 1.20891 1.01764 0.86898 0.89315 1.21272 1.00127 0.96614 0.98335 1.20217 0.87257 0.95061 0.91204 0.95914 1.22454 0.98597 0.94543 0.97694 0.90057 1.23333 0.99658 1.00408 0.94714 1.21299 0.88458 0.99004 0.85992 1.44357 0.99109 1.76735 1.11377 1.18928 0.82436 1.36556 0.96321 0.90531 1.24730 0.97304 1.01851 0.96500 1.69953 1.23735 1.51167 1.11830 0.86171 0.84350 0.77303 0.78743 1.20620 1.22040 1.21896 1.20308 0.97174 0.96523 0.83814 1.73980 1.13211 1.25319 0.95293 0.90962 0.90151 0.91676 0.91440 0.90769 0.90149 0.91477 0.89949 0.91393 0.80963 0.82519 0.91579 0.90326 0.90795 0.92834 0.91923 0.92285 0.93535 0.94033 0.93969 0.91412 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 8.71 37.16 0.32 -1.13 16 2 C 0.17 1.61 1.21 -131.82 -0.16 1.45 16 3 C -0.15 -1.44 8.01 37.16 0.30 -1.14 16 4 C -0.16 -1.03 8.27 37.16 0.31 -0.72 16 5 N -0.28 -3.64 3.16 -48.62 -0.15 -3.80 16 6 C -0.02 -0.30 10.52 -17.17 -0.18 -0.48 16 7 C -0.18 -2.78 10.81 -39.36 -0.43 -3.20 16 8 C -0.01 -0.21 6.74 -82.77 -0.56 -0.76 16 9 C 0.58 12.23 7.52 -12.39 -0.09 12.14 16 10 O -0.55 -12.60 16.50 5.30 0.09 -12.51 16 11 N -0.56 -11.31 3.19 -180.38 -0.58 -11.88 16 12 C 0.13 2.52 4.24 -5.87 -0.02 2.49 16 13 C -0.12 -2.23 5.09 -28.35 -0.14 -2.37 16 14 C 0.17 3.45 2.93 -68.35 -0.20 3.25 16 15 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 16 C -0.11 -2.05 3.80 -88.92 -0.34 -2.39 16 17 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.14 -2.72 6.14 -24.11 -0.15 -2.87 16 19 C 0.18 4.34 4.82 -2.54 -0.01 4.33 16 20 N -0.59 -14.60 3.05 -164.17 -0.50 -15.10 16 21 C -0.21 -5.77 8.86 -15.06 -0.13 -5.91 16 22 H 0.08 2.00 6.89 -52.49 -0.36 1.63 16 23 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 24 N -0.92 -27.40 10.41 55.49 0.58 -26.82 16 25 Si 0.90 22.36 29.55 -169.99 -5.02 17.33 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 C 0.14 2.84 4.60 -6.19 -0.03 2.81 16 30 N -0.24 -3.99 6.97 33.42 0.23 -3.75 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.97 7.99 -51.93 -0.42 0.56 16 37 H 0.07 0.38 7.27 -51.93 -0.38 0.00 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.17 1.41 7.47 -52.48 -0.39 1.02 16 41 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 42 H 0.07 1.14 6.39 -51.93 -0.33 0.81 16 43 H 0.08 1.71 6.67 -51.92 -0.35 1.36 16 44 H 0.07 1.33 7.36 -51.93 -0.38 0.95 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.06 1.11 7.81 -51.93 -0.41 0.70 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.05 1.30 7.13 -51.93 -0.37 0.93 16 49 H 0.04 1.12 7.58 -51.93 -0.39 0.73 16 50 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 51 H 0.07 1.52 6.56 -51.93 -0.34 1.17 16 52 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 LS Contribution 395.00 15.07 5.95 5.95 Total: -1.00 -33.73 395.00 -9.76 -43.49 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.74 Total: 1.89 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -1.61 Total: 5.20 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.42 Total: -61.36 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.73 -9.76 -43.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036726971.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.361 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds