Wall clock time and date at job start Wed Apr 1 2020 04:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46976 * 2 1 4 4 C 1.52999 * 109.47146 * 240.00395 * 2 1 3 5 5 N 1.46492 * 109.47537 * 120.00168 * 2 1 3 6 6 C 1.35037 * 124.88490 * 75.02422 * 5 2 1 7 7 C 1.35368 * 107.23171 * 179.76463 * 6 5 2 8 8 C 1.41507 * 105.49783 * 0.35759 * 7 6 5 9 9 C 1.47711 * 126.51610 * 179.89975 * 8 7 6 10 10 O 1.21572 * 120.00024 * 6.72427 * 9 8 7 11 11 N 1.34774 * 120.00150 * 186.72031 * 9 8 7 12 12 C 1.46825 * 120.30272 * 176.51897 * 11 9 8 13 13 C 1.52966 * 107.39994 * 235.00849 * 12 11 9 14 14 C 1.53050 * 109.99609 * 298.54689 * 13 12 11 15 15 H 1.09004 * 110.61723 * 289.28013 * 14 13 12 16 16 C 1.51777 * 112.25688 * 52.94964 * 14 13 12 17 17 H 1.09001 * 105.74618 * 207.27905 * 16 14 13 18 18 C 1.53384 * 105.81708 * 95.44118 * 16 14 13 19 19 C 1.54463 * 102.54086 * 29.53805 * 18 16 14 20 20 N 1.46873 * 106.66006 * 332.27910 * 19 18 16 21 21 C 1.36935 * 125.33374 * 195.33153 * 20 19 18 22 22 H 1.08004 * 120.00142 * 179.57881 * 21 20 19 23 23 C 1.38812 * 120.00617 * 359.57327 * 21 20 19 24 24 N 1.31623 * 119.99547 * 325.29259 * 23 21 20 25 25 Si 1.86800 * 120.00428 * 145.27990 * 23 21 20 26 26 H 1.48502 * 109.47111 * 180.02562 * 25 23 21 27 27 H 1.48502 * 109.46700 * 60.00403 * 25 23 21 28 28 H 1.48495 * 109.47198 * 300.00721 * 25 23 21 29 29 C 1.45264 * 120.15355 * 356.75851 * 11 9 8 30 30 N 1.28471 * 124.88547 * 255.02478 * 5 2 1 31 31 H 1.09004 * 109.47203 * 299.99480 * 1 2 3 32 32 H 1.09002 * 109.47553 * 59.99519 * 1 2 3 33 33 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46998 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.46985 * 300.00096 * 3 2 1 36 36 H 1.08991 * 109.46979 * 60.00432 * 3 2 1 37 37 H 1.08998 * 109.47081 * 300.00051 * 4 2 1 38 38 H 1.09006 * 109.47473 * 59.99969 * 4 2 1 39 39 H 1.09002 * 109.47366 * 179.97438 * 4 2 1 40 40 H 1.07997 * 126.38659 * 0.03597 * 6 5 2 41 41 H 1.07991 * 127.25112 * 180.24273 * 7 6 5 42 42 H 1.08993 * 109.86888 * 115.53757 * 12 11 9 43 43 H 1.08999 * 109.92960 * 354.51342 * 12 11 9 44 44 H 1.09000 * 109.38592 * 178.38611 * 13 12 11 45 45 H 1.08998 * 109.38484 * 58.70600 * 13 12 11 46 46 H 1.09007 * 110.79279 * 271.28020 * 18 16 14 47 47 H 1.09001 * 110.79812 * 147.80619 * 18 16 14 48 48 H 1.08994 * 110.02540 * 212.97454 * 19 18 16 49 49 H 1.08998 * 110.05498 * 91.59304 * 19 18 16 50 50 H 0.97003 * 120.00157 * 354.74946 * 24 23 21 51 51 H 1.08998 * 108.84039 * 21.98974 * 29 11 9 52 52 H 1.09002 * 107.98556 * 264.71111 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0060 -2.0291 1.3742 7 6 2.5409 -2.2764 2.5929 8 6 2.8628 -1.0071 3.1292 9 6 3.4727 -0.7389 4.4475 10 8 3.8597 -1.6621 5.1373 11 7 3.6003 0.5293 4.8855 12 6 4.1353 0.7998 6.2258 13 6 3.1087 1.6619 6.9626 14 6 2.9142 2.9890 6.2254 15 1 3.7966 3.6200 6.3317 16 6 2.5843 2.7882 4.7576 17 1 2.9436 3.6826 4.2486 18 6 1.0544 2.8427 4.6617 19 6 0.6785 3.7829 5.8281 20 7 1.7378 3.6473 6.8364 21 6 1.6525 4.0690 8.1364 22 1 2.4846 3.9191 8.8085 23 6 0.4967 4.6893 8.5905 24 7 -0.1920 5.4690 7.7842 25 14 -0.0816 4.4171 10.3458 26 1 -1.3311 5.1847 10.5800 27 1 0.9678 4.8786 11.2898 28 1 -0.3413 2.9712 10.5628 29 6 3.2040 1.6384 4.0352 30 7 2.5201 -0.1099 2.2264 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 -1.7488 -1.2494 38 1 1.6766 -0.2073 -2.1393 39 1 3.1300 -0.7208 -1.2495 40 1 1.6417 -2.7654 0.6731 41 1 2.6889 -3.2394 3.0586 42 1 5.0806 1.3364 6.1460 43 1 4.2853 -0.1372 6.7621 44 1 3.4616 1.8588 7.9749 45 1 2.1577 1.1314 7.0095 46 1 0.6220 1.8528 4.8079 47 1 0.7413 3.2658 3.7072 48 1 -0.2807 3.4862 6.2524 49 1 0.6280 4.8133 5.4763 50 1 0.1474 5.6713 6.8982 51 1 2.4947 1.2756 3.2913 52 1 4.0917 1.9966 3.5138 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036726972.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:06 Heat of formation + Delta-G solvation = 86.293548 kcal Electronic energy + Delta-G solvation = -32432.141396 eV Core-core repulsion = 28434.755247 eV Total energy + Delta-G solvation = -3997.386149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.92132 -40.01393 -38.26637 -37.11971 -35.39773 -32.80203 -32.29074 -31.07341 -30.62268 -29.39280 -28.24698 -27.96964 -27.72241 -25.32885 -24.06106 -23.40719 -22.55675 -21.63454 -20.22028 -20.06401 -19.63090 -18.26612 -17.58421 -17.17907 -16.67215 -16.28844 -15.72833 -15.18293 -14.72176 -14.67632 -14.39543 -14.14256 -14.02341 -13.92361 -13.58687 -13.24874 -13.08214 -12.95982 -12.89312 -12.83671 -12.71327 -12.52410 -12.29049 -12.25270 -12.01483 -11.78327 -11.65780 -11.55907 -11.37112 -10.98012 -10.68370 -10.56539 -10.31800 -10.21783 -10.00467 -9.94550 -9.70644 -9.56791 -9.55120 -9.27544 -9.16157 -8.39285 -8.18913 -6.93335 -6.09710 -2.97501 1.57204 2.06733 2.16917 3.21527 3.52913 3.54588 3.61072 3.77186 3.92303 4.21276 4.32058 4.46096 4.56082 4.62858 4.89127 4.94289 5.00770 5.09798 5.13418 5.15950 5.20607 5.27341 5.28563 5.32859 5.36534 5.44566 5.53643 5.55641 5.63306 5.64957 5.67125 5.78160 5.82464 5.88084 5.92992 5.95324 6.11447 6.17549 6.26622 6.30864 6.41479 6.46248 6.62601 6.70281 6.76425 6.99933 7.03702 7.07752 7.19258 7.59794 7.84027 7.86325 8.35969 8.54188 9.05091 9.89355 10.43067 11.24956 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014468 B = 0.003211 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.789709 B = 8717.753142 C = 9795.786914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.167 3.833 3 C -0.150 4.150 4 C -0.158 4.158 5 N -0.276 5.276 6 C -0.018 4.018 7 C -0.179 4.179 8 C -0.012 4.012 9 C 0.599 3.401 10 O -0.543 6.543 11 N -0.586 5.586 12 C 0.111 3.889 13 C -0.135 4.135 14 C 0.176 3.824 15 H 0.039 0.961 16 C -0.104 4.104 17 H 0.062 0.938 18 C -0.122 4.122 19 C 0.146 3.854 20 N -0.599 5.599 21 C -0.341 4.341 22 H 0.071 0.929 23 C -0.020 4.020 24 N -0.913 5.913 25 Si 1.050 2.950 26 H -0.287 1.287 27 H -0.294 1.294 28 H -0.295 1.295 29 C 0.108 3.892 30 N -0.252 5.252 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.176 0.824 41 H 0.160 0.840 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.045 0.955 49 H 0.022 0.978 50 H 0.269 0.731 51 H 0.123 0.877 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.065 -12.681 -21.665 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.216 4.216 5 N -0.065 5.065 6 C -0.160 4.160 7 C -0.207 4.207 8 C -0.171 4.171 9 C 0.386 3.614 10 O -0.419 6.419 11 N -0.317 5.317 12 C -0.012 4.012 13 C -0.175 4.175 14 C 0.069 3.931 15 H 0.057 0.943 16 C -0.124 4.124 17 H 0.080 0.920 18 C -0.160 4.160 19 C 0.020 3.980 20 N -0.325 5.325 21 C -0.467 4.467 22 H 0.089 0.911 23 C -0.222 4.222 24 N -0.554 5.554 25 Si 0.880 3.120 26 H -0.213 1.213 27 H -0.221 1.221 28 H -0.222 1.222 29 C -0.016 4.016 30 N -0.087 5.087 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.194 0.806 41 H 0.177 0.823 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.063 0.937 49 H 0.040 0.960 50 H 0.081 0.919 51 H 0.140 0.860 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.992 -11.527 -20.425 23.643 hybrid contribution 1.200 -1.032 -0.922 1.831 sum 4.191 -12.559 -21.347 25.119 Atomic orbital electron populations 1.22265 0.92137 1.03427 1.04065 1.21045 0.95132 0.94093 0.81218 1.21997 1.02426 0.92440 1.03844 1.22229 1.02500 1.01062 0.95840 1.46026 1.42601 1.04798 1.13026 1.22691 1.07055 0.86406 0.99892 1.21723 1.05398 0.98646 0.94968 1.21979 1.07567 0.91568 0.96014 1.16999 0.78277 0.82646 0.83490 1.90754 1.50745 1.43660 1.56765 1.47510 1.61706 1.05381 1.17120 1.21733 0.96694 1.00785 0.81947 1.22329 0.98674 0.96979 0.99494 1.20398 0.91272 0.92179 0.89296 0.94287 1.20736 0.96827 0.97536 0.97285 0.91971 1.22428 0.94411 1.00253 0.98953 1.21303 0.93166 0.95365 0.88167 1.44795 1.10060 1.69454 1.08219 1.19660 1.03448 1.39267 0.84373 0.91146 1.25556 0.95194 0.95855 1.05606 1.70815 1.44403 1.29738 1.10477 0.83737 0.76355 0.76173 0.75748 1.21264 1.22112 1.22247 1.21115 1.00580 0.86704 0.93237 1.73455 1.14451 1.25233 0.95594 0.91072 0.89945 0.91568 0.91339 0.90498 0.90406 0.91367 0.89757 0.91309 0.80644 0.82264 0.91616 0.89232 0.91038 0.91518 0.92313 0.91898 0.93654 0.96027 0.91872 0.85964 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 8.70 37.16 0.32 -0.63 16 2 C 0.17 1.13 1.21 -131.82 -0.16 0.97 16 3 C -0.15 -1.05 8.01 37.16 0.30 -0.76 16 4 C -0.16 -0.70 8.27 37.16 0.31 -0.39 16 5 N -0.28 -2.75 3.16 -48.62 -0.15 -2.90 16 6 C -0.02 -0.16 10.52 -17.17 -0.18 -0.35 16 7 C -0.18 -2.19 10.81 -39.36 -0.43 -2.61 16 8 C -0.01 -0.18 6.84 -82.76 -0.57 -0.74 16 9 C 0.60 10.35 7.68 -12.39 -0.10 10.26 16 10 O -0.54 -10.62 16.33 5.30 0.09 -10.53 16 11 N -0.59 -9.75 2.99 -177.81 -0.53 -10.29 16 12 C 0.11 1.85 6.42 -3.88 -0.02 1.83 16 13 C -0.13 -2.62 5.18 -26.72 -0.14 -2.76 16 14 C 0.18 3.65 3.41 -67.70 -0.23 3.42 16 15 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 16 C -0.10 -1.82 2.45 -92.88 -0.23 -2.05 16 17 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 18 C -0.12 -2.26 6.36 -25.76 -0.16 -2.42 16 19 C 0.15 3.45 5.28 -3.07 -0.02 3.44 16 20 N -0.60 -15.19 3.04 -164.00 -0.50 -15.69 16 21 C -0.34 -9.63 9.57 -15.06 -0.14 -9.78 16 22 H 0.07 1.99 8.02 -52.48 -0.42 1.57 16 23 C -0.02 -0.59 5.05 -17.43 -0.09 -0.68 16 24 N -0.91 -27.78 12.74 55.49 0.71 -27.08 16 25 Si 1.05 25.84 30.03 -169.99 -5.11 20.74 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 C 0.11 1.65 5.54 -6.54 -0.04 1.62 16 30 N -0.25 -3.25 7.32 33.42 0.24 -3.01 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.68 7.99 -51.93 -0.42 0.27 16 37 H 0.07 0.24 7.27 -51.93 -0.38 -0.13 16 38 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.18 0.96 7.47 -52.49 -0.39 0.57 16 41 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.09 1.52 7.01 -51.93 -0.36 1.15 16 44 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16 45 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.05 1.20 7.64 -51.93 -0.40 0.80 16 49 H 0.02 0.55 6.66 -51.93 -0.35 0.20 16 50 H 0.27 8.16 5.81 -40.82 -0.24 7.92 16 51 H 0.12 1.82 3.96 -70.46 -0.28 1.54 16 52 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 400.14 15.07 6.03 6.03 Total: -1.00 -34.52 400.14 -9.57 -44.09 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -8.78 Total: 0.28 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.57 Total: -1.65 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.23 Total: -58.97 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.11 Total: 20.74 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.52 -9.57 -44.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036726972.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.385 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds