Wall clock time and date at job start Wed Apr 1 2020 04:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47109 * 2 1 4 4 C 1.53000 * 109.47355 * 239.99265 * 2 1 3 5 5 N 1.46510 * 109.47065 * 119.99760 * 2 1 3 6 6 C 1.35033 * 124.88193 * 74.99976 * 5 2 1 7 7 C 1.35366 * 107.22155 * 179.97438 * 6 5 2 8 8 C 1.41494 * 105.50782 * 359.97438 * 7 6 5 9 9 C 1.47715 * 126.52001 * 179.97438 * 8 7 6 10 10 O 1.21576 * 119.99921 * 352.60946 * 9 8 7 11 11 N 1.34779 * 120.00090 * 172.60489 * 9 8 7 12 12 C 1.46593 * 119.67994 * 172.85943 * 11 9 8 13 13 C 1.53958 * 110.57092 * 132.19703 * 12 11 9 14 14 C 1.51236 * 107.40375 * 50.84282 * 13 12 11 15 15 H 1.08992 * 108.31191 * 53.42321 * 14 13 12 16 16 C 1.55054 * 108.10228 * 295.39078 * 14 13 12 17 17 H 1.09003 * 112.08252 * 308.95212 * 16 14 13 18 18 C 1.53737 * 100.33823 * 190.74416 * 16 14 13 19 19 C 1.55290 * 101.84435 * 38.92642 * 18 16 14 20 20 N 1.45469 * 117.53487 * 177.79044 * 14 13 12 21 21 C 1.36934 * 126.40669 * 329.91601 * 20 14 13 22 22 H 1.08004 * 120.00087 * 359.70922 * 21 20 14 23 23 C 1.38808 * 120.00086 * 179.71288 * 21 20 14 24 24 N 1.31617 * 120.00103 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00159 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46861 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47042 * 119.99923 * 25 23 21 28 28 H 1.48496 * 109.47275 * 240.00046 * 25 23 21 29 29 C 1.47716 * 119.67989 * 352.88693 * 11 9 8 30 30 N 1.28473 * 124.88157 * 255.24758 * 5 2 1 31 31 H 1.08995 * 109.47281 * 300.00240 * 1 2 3 32 32 H 1.08994 * 109.46842 * 60.00444 * 1 2 3 33 33 H 1.09001 * 109.46805 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46660 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46509 * 299.99592 * 3 2 1 36 36 H 1.08995 * 109.47245 * 59.99737 * 3 2 1 37 37 H 1.08990 * 109.47276 * 300.00396 * 4 2 1 38 38 H 1.09003 * 109.46376 * 60.00568 * 4 2 1 39 39 H 1.09003 * 109.47018 * 179.97438 * 4 2 1 40 40 H 1.07991 * 126.38997 * 359.94525 * 6 5 2 41 41 H 1.08000 * 127.24547 * 179.97438 * 7 6 5 42 42 H 1.09000 * 109.25834 * 252.48338 * 12 11 9 43 43 H 1.09007 * 109.25594 * 11.96038 * 12 11 9 44 44 H 1.09005 * 109.88288 * 170.51088 * 13 12 11 45 45 H 1.09000 * 109.88957 * 291.52344 * 13 12 11 46 46 H 1.09003 * 110.95874 * 280.78402 * 18 16 14 47 47 H 1.09004 * 110.95804 * 157.06672 * 18 16 14 48 48 H 1.08998 * 109.91842 * 218.17466 * 19 18 16 49 49 H 1.08996 * 109.91752 * 96.86715 * 19 18 16 50 50 H 0.97006 * 120.00182 * 179.97438 * 24 23 21 51 51 H 1.08995 * 110.06825 * 112.82645 * 29 11 9 52 52 H 1.08994 * 110.07135 * 351.24208 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 2.0183 -0.6906 1.1963 6 6 2.0054 -2.0290 1.3746 7 6 2.5361 -2.2758 2.5953 8 6 2.8643 -1.0070 3.1287 9 6 3.4743 -0.7387 4.4469 10 8 3.6199 -1.6443 5.2450 11 7 3.8695 0.5099 4.7651 12 6 4.3276 0.8015 6.1267 13 6 5.6510 1.5877 6.0954 14 6 5.4579 2.7616 5.1616 15 1 4.5732 3.3118 5.4817 16 6 5.2197 2.2069 3.7334 17 1 5.9836 1.4864 3.4410 18 6 5.3299 3.5021 2.9125 19 6 6.4915 4.2386 3.6336 20 7 6.5691 3.6875 5.0066 21 6 7.5137 3.9888 5.9511 22 1 7.4715 3.5233 6.9247 23 6 8.5253 4.8927 5.6572 24 7 8.5769 5.4597 4.4706 25 14 9.8135 5.3043 6.9459 26 1 9.5344 4.5383 8.1870 27 1 11.1595 4.9423 6.4335 28 1 9.7711 6.7590 7.2412 29 6 3.8362 1.5715 3.7384 30 7 2.5162 -0.1096 2.2283 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.6767 -1.7490 -1.2491 38 1 1.6767 -0.2075 -2.1391 39 1 3.1301 -0.7210 -1.2493 40 1 1.6395 -2.7652 0.6744 41 1 2.6789 -3.2386 3.0634 42 1 3.5705 1.3925 6.6420 43 1 4.4792 -0.1351 6.6633 44 1 5.8947 1.9433 7.0966 45 1 6.4527 0.9496 5.7236 46 1 4.4072 4.0796 2.9696 47 1 5.5891 3.2860 1.8761 48 1 6.2848 5.3081 3.6738 49 1 7.4288 4.0582 3.1074 50 1 9.2837 6.0917 4.2653 51 1 3.0834 2.3167 3.9953 52 1 3.6192 1.1402 2.7613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036726973.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:12 Heat of formation + Delta-G solvation = 86.201946 kcal Electronic energy + Delta-G solvation = -32137.048545 eV Core-core repulsion = 28139.658423 eV Total energy + Delta-G solvation = -3997.390121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.90323 -39.91436 -38.15021 -37.09525 -35.16246 -32.51288 -32.18204 -31.05785 -30.54202 -29.41257 -28.00054 -27.93350 -27.68033 -25.26573 -24.19197 -23.00155 -22.37934 -21.45412 -20.09336 -19.96968 -19.62434 -18.93444 -17.30253 -16.77277 -16.28900 -16.19398 -15.60428 -14.99494 -14.86636 -14.69267 -14.38114 -14.10570 -14.05954 -13.75281 -13.67190 -13.30584 -13.07367 -12.97631 -12.79377 -12.75904 -12.48360 -12.41316 -12.24350 -12.17263 -11.79333 -11.64781 -11.54093 -11.44968 -11.32885 -10.82494 -10.79132 -10.54003 -10.45935 -10.11155 -10.05435 -9.83897 -9.78519 -9.56744 -9.41908 -9.15806 -9.10011 -8.58643 -8.33396 -6.78377 -5.67655 -3.00019 1.58309 2.08063 2.18899 3.22212 3.42478 3.48358 3.50390 3.54294 3.94510 4.23253 4.34046 4.46921 4.53775 4.57779 4.90629 4.95274 5.12036 5.12928 5.14135 5.21143 5.28762 5.36314 5.37918 5.44916 5.47068 5.51347 5.59800 5.62401 5.66423 5.67048 5.70736 5.84022 5.88787 5.95328 5.99592 6.13874 6.22016 6.31463 6.33701 6.38884 6.50666 6.57909 6.68924 6.73873 6.76215 7.02407 7.15805 7.56813 7.61395 7.65601 7.84830 7.87846 8.28700 8.38160 9.24183 9.87705 10.56046 11.45087 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016123 B = 0.002969 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.235002 B = 9427.124520 C =10715.322138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 C -0.151 4.151 4 C -0.159 4.159 5 N -0.276 5.276 6 C -0.019 4.019 7 C -0.180 4.180 8 C -0.012 4.012 9 C 0.598 3.402 10 O -0.545 6.545 11 N -0.593 5.593 12 C 0.116 3.884 13 C -0.128 4.128 14 C 0.168 3.832 15 H 0.018 0.982 16 C -0.123 4.123 17 H 0.076 0.924 18 C -0.133 4.133 19 C 0.178 3.822 20 N -0.595 5.595 21 C -0.221 4.221 22 H 0.079 0.921 23 C -0.010 4.010 24 N -0.923 5.923 25 Si 0.909 3.091 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.104 3.896 30 N -0.250 5.250 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.176 0.824 41 H 0.159 0.841 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.037 0.963 49 H 0.053 0.947 50 H 0.250 0.750 51 H 0.065 0.935 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.110 -12.434 -13.318 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.085 3.915 3 C -0.208 4.208 4 C -0.217 4.217 5 N -0.065 5.065 6 C -0.161 4.161 7 C -0.208 4.208 8 C -0.172 4.172 9 C 0.385 3.615 10 O -0.421 6.421 11 N -0.325 5.325 12 C -0.006 4.006 13 C -0.168 4.168 14 C 0.059 3.941 15 H 0.035 0.965 16 C -0.143 4.143 17 H 0.094 0.906 18 C -0.172 4.172 19 C 0.053 3.947 20 N -0.319 5.319 21 C -0.350 4.350 22 H 0.097 0.903 23 C -0.206 4.206 24 N -0.571 5.571 25 Si 0.740 3.260 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.218 1.218 29 C -0.019 4.019 30 N -0.085 5.085 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.193 0.807 41 H 0.177 0.823 42 H 0.081 0.919 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.056 0.944 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.083 0.917 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.895 -11.533 -13.145 25.021 hybrid contribution 0.787 -0.529 0.723 1.192 sum -17.108 -12.062 -12.422 24.341 Atomic orbital electron populations 1.22244 0.92301 1.03291 1.03847 1.21055 0.94977 0.94230 0.81237 1.22010 1.02816 0.92246 1.03737 1.22237 1.02735 1.00959 0.95814 1.46034 1.42523 1.04786 1.13119 1.22686 1.07230 0.86455 0.99769 1.21725 1.05382 0.98688 0.95009 1.21971 1.07488 0.91554 0.96154 1.17070 0.77713 0.82543 0.84219 1.90749 1.57038 1.44097 1.50255 1.48127 1.62943 1.09020 1.12399 1.21666 0.96236 1.00853 0.81883 1.21838 0.95876 0.97578 1.01474 1.20516 0.91653 0.89685 0.92213 0.96494 1.22567 0.95978 0.96968 0.98821 0.90560 1.22682 1.00406 0.95822 0.98297 1.21518 0.94032 0.95141 0.83992 1.44225 1.28891 1.47003 1.11804 1.19067 1.02710 1.20169 0.93035 0.90322 1.24779 0.99108 0.99647 0.97046 1.69952 1.34481 1.32676 1.19943 0.86080 0.81577 0.77792 0.80572 1.20509 1.21867 1.21845 1.22445 0.97009 0.89497 0.92917 1.73490 1.14045 1.25402 0.95611 0.91305 0.89985 0.91643 0.91016 0.90493 0.90466 0.91424 0.89738 0.91133 0.80674 0.82302 0.91911 0.89307 0.90600 0.91546 0.92410 0.92329 0.94430 0.92845 0.93915 0.91699 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 8.70 37.16 0.32 -0.50 16 2 C 0.17 1.12 1.21 -131.81 -0.16 0.96 16 3 C -0.15 -1.09 8.01 37.16 0.30 -0.79 16 4 C -0.16 -0.75 8.27 37.16 0.31 -0.45 16 5 N -0.28 -2.72 3.16 -48.61 -0.15 -2.87 16 6 C -0.02 -0.17 10.52 -17.17 -0.18 -0.35 16 7 C -0.18 -2.17 10.81 -39.37 -0.43 -2.60 16 8 C -0.01 -0.18 6.79 -82.77 -0.56 -0.74 16 9 C 0.60 10.26 7.66 -12.39 -0.09 10.17 16 10 O -0.54 -10.58 16.27 5.30 0.09 -10.49 16 11 N -0.59 -9.89 3.00 -173.65 -0.52 -10.41 16 12 C 0.12 1.93 6.34 -3.49 -0.02 1.91 16 13 C -0.13 -2.44 5.48 -27.12 -0.15 -2.58 16 14 C 0.17 3.51 2.55 -68.29 -0.17 3.34 16 15 H 0.02 0.38 7.89 -51.93 -0.41 -0.03 16 16 C -0.12 -2.26 2.85 -89.53 -0.26 -2.51 16 17 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 18 C -0.13 -2.47 6.54 -25.13 -0.16 -2.63 16 19 C 0.18 4.31 5.45 -1.92 -0.01 4.30 16 20 N -0.59 -15.20 3.35 -163.45 -0.55 -15.75 16 21 C -0.22 -6.17 9.88 -15.06 -0.15 -6.32 16 22 H 0.08 2.12 7.21 -52.48 -0.38 1.74 16 23 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -27.25 10.44 55.49 0.58 -26.67 16 25 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 C 0.10 1.64 5.55 -3.76 -0.02 1.62 16 30 N -0.25 -3.22 7.37 33.42 0.25 -2.97 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.66 7.99 -51.93 -0.42 0.24 16 37 H 0.07 0.25 7.27 -51.93 -0.38 -0.13 16 38 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.18 0.94 7.47 -52.49 -0.39 0.55 16 41 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 1.48 6.92 -51.92 -0.36 1.12 16 44 H 0.08 1.44 7.62 -51.93 -0.40 1.04 16 45 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 46 H 0.06 0.99 8.11 -51.93 -0.42 0.56 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.04 1.00 7.77 -51.93 -0.40 0.59 16 49 H 0.05 1.44 7.21 -51.93 -0.37 1.07 16 50 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 51 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 52 H 0.12 1.80 4.25 -69.23 -0.29 1.51 16 LS Contribution 400.28 15.07 6.03 6.03 Total: -1.00 -33.69 400.28 -9.69 -43.38 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -8.85 Total: -0.03 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.53 Total: 2.43 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.40 Total: -58.67 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.69 -9.69 -43.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036726973.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.579 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds