Wall clock time and date at job start Wed Apr 1 2020 04:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47160 * 2 1 4 4 C 1.53002 * 109.47471 * 239.99556 * 2 1 3 5 5 N 1.46506 * 109.46752 * 119.99733 * 2 1 3 6 6 C 1.35033 * 124.88632 * 74.99809 * 5 2 1 7 7 C 1.35360 * 107.22942 * 180.02562 * 6 5 2 8 8 C 1.41499 * 105.50684 * 0.02562 * 7 6 5 9 9 C 1.47709 * 126.52055 * 179.97438 * 8 7 6 10 10 O 1.21559 * 120.00123 * 6.72898 * 9 8 7 11 11 N 1.34782 * 119.99667 * 186.73199 * 9 8 7 12 12 C 1.46598 * 119.68017 * 176.23340 * 11 9 8 13 13 C 1.53956 * 110.57330 * 227.82305 * 12 11 9 14 14 C 1.51489 * 107.35277 * 308.94175 * 13 12 11 15 15 H 1.09006 * 109.29749 * 306.31495 * 14 13 12 16 16 C 1.55357 * 107.78060 * 64.87395 * 14 13 12 17 17 H 1.08996 * 112.28475 * 50.85072 * 16 14 13 18 18 C 1.53743 * 100.22044 * 169.07156 * 16 14 13 19 19 C 1.55287 * 101.87319 * 320.88823 * 18 16 14 20 20 N 1.45460 * 117.34275 * 181.91137 * 14 13 12 21 21 C 1.36937 * 126.40793 * 30.62615 * 20 14 13 22 22 H 1.08000 * 119.99707 * 359.97438 * 21 20 14 23 23 C 1.38815 * 120.00287 * 179.97438 * 21 20 14 24 24 N 1.31615 * 119.99858 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99966 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47137 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.46985 * 119.99856 * 25 23 21 28 28 H 1.48498 * 109.46852 * 239.99581 * 25 23 21 29 29 C 1.47716 * 119.68746 * 356.25271 * 11 9 8 30 30 N 1.28471 * 124.88361 * 255.33377 * 5 2 1 31 31 H 1.08991 * 109.47148 * 300.00446 * 1 2 3 32 32 H 1.09008 * 109.46470 * 60.00342 * 1 2 3 33 33 H 1.09003 * 109.46921 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47138 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47097 * 299.99679 * 3 2 1 36 36 H 1.09003 * 109.47351 * 59.99357 * 3 2 1 37 37 H 1.09000 * 109.46656 * 300.00124 * 4 2 1 38 38 H 1.08996 * 109.46859 * 60.00275 * 4 2 1 39 39 H 1.08999 * 109.47154 * 180.02562 * 4 2 1 40 40 H 1.08001 * 126.37939 * 0.06411 * 6 5 2 41 41 H 1.08001 * 127.24681 * 180.02562 * 7 6 5 42 42 H 1.09002 * 109.25839 * 348.10792 * 12 11 9 43 43 H 1.08997 * 109.25512 * 107.54605 * 12 11 9 44 44 H 1.09007 * 109.87863 * 68.40923 * 13 12 11 45 45 H 1.08999 * 109.88447 * 189.48315 * 13 12 11 46 46 H 1.09004 * 110.95602 * 79.04140 * 18 16 14 47 47 H 1.09002 * 110.95850 * 202.72825 * 18 16 14 48 48 H 1.08997 * 109.91969 * 141.84463 * 19 18 16 49 49 H 1.08993 * 109.92098 * 263.14723 * 19 18 16 50 50 H 0.96999 * 120.00274 * 179.97438 * 24 23 21 51 51 H 1.08997 * 110.06831 * 8.72612 * 29 11 9 52 52 H 1.08999 * 110.07001 * 247.15425 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1963 6 6 2.0054 -2.0290 1.3747 7 6 2.5349 -2.2758 2.5958 8 6 2.8614 -1.0069 3.1300 9 6 3.4697 -0.7385 4.4490 10 8 3.8510 -1.6618 5.1417 11 7 3.6019 0.5301 4.8845 12 6 4.1299 0.7850 6.2282 13 6 3.2438 1.7991 6.9743 14 6 3.0617 2.9959 6.0637 15 1 4.0394 3.3616 5.7495 16 6 2.2670 2.5251 4.8145 17 1 1.3601 1.9829 5.0819 18 6 1.9374 3.8830 4.1732 19 6 1.6214 4.7560 5.4179 20 7 2.2864 4.1144 6.5773 21 6 2.1885 4.5022 7.8869 22 1 2.7198 3.9566 8.6527 23 6 1.4065 5.5965 8.2302 24 7 0.7595 6.2617 7.2969 25 14 1.2726 6.1251 10.0169 26 1 2.0903 5.2197 10.8636 27 1 1.7684 7.5175 10.1597 28 1 -0.1470 6.0585 10.4476 29 6 3.2130 1.6503 4.0037 30 7 2.5147 -0.1095 2.2289 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9562 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.6768 -1.7490 -1.2490 38 1 1.6769 -0.2075 -2.1392 39 1 3.1301 -0.7217 -1.2489 40 1 1.6410 -2.7653 0.6736 41 1 2.6781 -3.2386 3.0637 42 1 4.1556 -0.1501 6.7877 43 1 5.1415 1.1828 6.1473 44 1 2.2750 1.3516 7.1967 45 1 3.7315 2.1077 7.8989 46 1 2.7964 4.2760 3.6293 47 1 1.0678 3.8051 3.5206 48 1 2.0134 5.7628 5.2746 49 1 0.5444 4.7937 5.5813 50 1 0.2127 7.0261 7.5368 51 1 2.7042 1.2702 3.1178 52 1 4.0947 2.2217 3.7137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036726974.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:18 Heat of formation + Delta-G solvation = 88.676238 kcal Electronic energy + Delta-G solvation = -32240.763400 eV Core-core repulsion = 28243.480573 eV Total energy + Delta-G solvation = -3997.282828 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.91140 -39.89577 -38.13719 -37.08880 -35.15847 -32.50570 -32.19148 -31.06392 -30.53039 -29.40141 -27.98059 -27.92009 -27.67255 -25.26714 -24.19328 -22.99001 -22.38532 -21.44324 -20.11981 -19.94495 -19.64426 -18.94510 -17.29893 -16.74083 -16.25519 -16.23308 -15.58448 -15.02535 -14.85228 -14.68790 -14.40953 -14.11076 -14.01664 -13.77866 -13.63771 -13.32938 -13.05336 -12.93922 -12.82857 -12.73626 -12.48419 -12.42751 -12.22621 -12.18008 -11.83387 -11.63035 -11.53108 -11.45120 -11.33297 -10.81897 -10.79216 -10.54205 -10.33540 -10.11555 -10.05168 -9.82651 -9.78898 -9.56021 -9.35754 -9.14865 -9.09764 -8.58533 -8.33052 -6.78019 -5.67509 -2.99717 1.58145 2.08382 2.17921 3.23124 3.42377 3.48255 3.50282 3.55645 3.94999 4.24206 4.35148 4.47198 4.53741 4.57479 4.91227 4.96676 5.11373 5.14250 5.16532 5.23065 5.28944 5.36828 5.38649 5.45798 5.47817 5.51821 5.60214 5.62514 5.66553 5.69715 5.72098 5.85290 5.89209 5.95987 6.00319 6.12748 6.22975 6.31031 6.34936 6.41210 6.50931 6.58276 6.69301 6.75084 6.79363 7.06373 7.16883 7.57254 7.61872 7.65663 7.84956 7.90785 8.28809 8.38842 9.24270 9.87902 10.56408 11.45300 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.003091 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.046218 B = 9055.045882 C =10406.831798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.166 3.834 3 C -0.151 4.151 4 C -0.158 4.158 5 N -0.276 5.276 6 C -0.017 4.017 7 C -0.180 4.180 8 C -0.009 4.009 9 C 0.597 3.403 10 O -0.546 6.546 11 N -0.592 5.592 12 C 0.117 3.883 13 C -0.128 4.128 14 C 0.166 3.834 15 H 0.020 0.980 16 C -0.120 4.120 17 H 0.076 0.924 18 C -0.134 4.134 19 C 0.178 3.822 20 N -0.596 5.596 21 C -0.221 4.221 22 H 0.079 0.921 23 C -0.010 4.010 24 N -0.923 5.923 25 Si 0.909 3.091 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 C 0.085 3.915 30 N -0.252 5.252 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.176 0.824 41 H 0.160 0.840 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.037 0.963 49 H 0.053 0.947 50 H 0.250 0.750 51 H 0.140 0.860 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -14.517 -20.386 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.084 3.916 3 C -0.208 4.208 4 C -0.216 4.216 5 N -0.064 5.064 6 C -0.160 4.160 7 C -0.208 4.208 8 C -0.169 4.169 9 C 0.384 3.616 10 O -0.422 6.422 11 N -0.323 5.323 12 C -0.006 4.006 13 C -0.167 4.167 14 C 0.058 3.942 15 H 0.037 0.963 16 C -0.140 4.140 17 H 0.094 0.906 18 C -0.172 4.172 19 C 0.053 3.947 20 N -0.320 5.320 21 C -0.350 4.350 22 H 0.097 0.903 23 C -0.206 4.206 24 N -0.571 5.571 25 Si 0.740 3.260 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.038 4.038 30 N -0.086 5.086 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.194 0.806 41 H 0.177 0.823 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.055 0.945 49 H 0.071 0.929 50 H 0.061 0.939 51 H 0.156 0.844 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.353 -13.605 -20.178 24.373 hybrid contribution -0.210 -0.390 1.122 1.206 sum 1.143 -13.995 -19.056 23.670 Atomic orbital electron populations 1.22265 0.92153 1.03363 1.04090 1.21062 0.95131 0.94165 0.81195 1.22015 1.02476 0.92361 1.03994 1.22229 1.02523 1.01019 0.95861 1.46106 1.42568 1.04794 1.12928 1.22691 1.07063 0.86423 0.99796 1.21711 1.05489 0.98644 0.94970 1.21997 1.07284 0.91531 0.96050 1.17082 0.78180 0.82848 0.83538 1.90744 1.50918 1.43939 1.56645 1.48142 1.62503 1.05623 1.16020 1.21659 0.96639 1.00280 0.82034 1.21873 0.99977 0.95780 0.99043 1.20662 0.93828 0.87929 0.91783 0.96315 1.22575 0.98331 0.95407 0.97699 0.90607 1.22682 1.00008 0.95534 0.99020 1.21528 0.97642 0.93169 0.82321 1.44259 1.54464 1.29888 1.03436 1.19069 1.23967 1.09548 0.82367 0.90342 1.24778 0.99900 0.98341 0.97580 1.69949 1.34799 1.21851 1.30472 0.86083 0.77331 0.78185 0.84445 1.20515 1.21856 1.21870 1.22831 0.98635 0.87298 0.94994 1.73175 1.14868 1.24836 0.95735 0.91046 0.89946 0.91622 0.91295 0.90449 0.90243 0.91409 0.89741 0.91289 0.80648 0.82273 0.89433 0.91927 0.91542 0.90615 0.92468 0.92369 0.94467 0.92860 0.93928 0.84413 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 8.70 37.16 0.32 -0.63 16 2 C 0.17 1.14 1.21 -131.82 -0.16 0.98 16 3 C -0.15 -1.09 8.01 37.15 0.30 -0.80 16 4 C -0.16 -0.71 8.27 37.16 0.31 -0.40 16 5 N -0.28 -2.74 3.16 -48.62 -0.15 -2.89 16 6 C -0.02 -0.15 10.52 -17.17 -0.18 -0.33 16 7 C -0.18 -2.17 10.81 -39.37 -0.43 -2.59 16 8 C -0.01 -0.14 6.88 -82.76 -0.57 -0.71 16 9 C 0.60 10.26 7.67 -12.39 -0.10 10.16 16 10 O -0.55 -10.56 16.28 5.31 0.09 -10.47 16 11 N -0.59 -9.90 3.00 -173.66 -0.52 -10.42 16 12 C 0.12 1.95 6.31 -3.49 -0.02 1.92 16 13 C -0.13 -2.42 5.48 -27.00 -0.15 -2.57 16 14 C 0.17 3.49 2.55 -68.00 -0.17 3.31 16 15 H 0.02 0.42 7.94 -51.93 -0.41 0.00 16 16 C -0.12 -2.20 2.85 -89.37 -0.26 -2.45 16 17 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 18 C -0.13 -2.48 6.53 -25.13 -0.16 -2.64 16 19 C 0.18 4.32 5.45 -1.86 -0.01 4.31 16 20 N -0.60 -15.23 3.35 -163.05 -0.55 -15.78 16 21 C -0.22 -6.16 9.88 -15.06 -0.15 -6.31 16 22 H 0.08 2.12 7.21 -52.49 -0.38 1.74 16 23 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -27.26 10.44 55.49 0.58 -26.68 16 25 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 C 0.09 1.35 5.81 -3.76 -0.02 1.33 16 30 N -0.25 -3.26 7.18 33.42 0.24 -3.02 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.72 7.99 -51.93 -0.41 0.30 16 37 H 0.07 0.24 7.27 -51.93 -0.38 -0.14 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.18 0.94 7.47 -52.49 -0.39 0.55 16 41 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.09 1.46 6.98 -51.93 -0.36 1.10 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 1.34 8.13 -51.92 -0.42 0.92 16 45 H 0.08 1.44 7.62 -51.93 -0.40 1.04 16 46 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 47 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.04 0.99 7.77 -51.93 -0.40 0.58 16 49 H 0.05 1.44 7.22 -51.93 -0.37 1.06 16 50 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 51 H 0.14 2.05 3.68 -128.14 -0.47 1.58 16 52 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 LS Contribution 400.00 15.07 6.03 6.03 Total: -1.00 -33.71 400.00 -9.88 -43.60 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -9.03 Total: 0.09 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -1.54 Total: 2.20 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.40 Total: -58.79 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.71 -9.88 -43.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036726974.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.273 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds