Wall clock time and date at job start Wed Apr 1 2020 04:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47149 * 2 1 4 4 C 1.53001 * 109.46959 * 119.99381 * 2 1 3 5 5 N 1.46495 * 109.47361 * 174.99933 * 4 2 1 6 6 C 1.35036 * 124.88339 * 124.99870 * 5 4 2 7 7 C 1.35375 * 107.22645 * 180.02562 * 6 5 4 8 8 C 1.41499 * 105.50035 * 0.02562 * 7 6 5 9 9 C 1.47720 * 126.51211 * 179.97438 * 8 7 6 10 10 O 1.21562 * 119.99812 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99597 * 179.97438 * 9 8 7 12 12 C 1.44221 * 115.76430 * 0.02562 * 11 9 8 13 13 C 1.51864 * 112.74934 * 186.22633 * 12 11 9 14 14 C 1.50987 * 111.88619 * 324.22132 * 13 12 11 15 15 H 1.09001 * 108.32310 * 180.27172 * 14 13 12 16 16 C 1.53982 * 111.97723 * 60.08109 * 14 13 12 17 17 H 1.08997 * 112.41699 * 75.67904 * 16 14 13 18 18 C 1.56267 * 99.75731 * 195.21952 * 16 14 13 19 19 C 1.54644 * 102.20602 * 38.87640 * 18 16 14 20 20 N 1.46661 * 113.21396 * 301.26188 * 14 13 12 21 21 C 1.36938 * 126.19820 * 330.13757 * 20 14 13 22 22 H 1.07999 * 119.99862 * 359.97438 * 21 20 14 23 23 C 1.38812 * 120.00039 * 179.97438 * 21 20 14 24 24 N 1.31625 * 119.99825 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99806 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47108 * 60.00046 * 25 23 21 27 27 H 1.48504 * 109.46722 * 179.97438 * 25 23 21 28 28 H 1.48491 * 109.47185 * 299.99403 * 25 23 21 29 29 C 1.43527 * 115.76319 * 180.02562 * 11 9 8 30 30 N 1.28473 * 124.88336 * 305.33324 * 5 4 2 31 31 H 1.09004 * 109.47367 * 300.00669 * 1 2 3 32 32 H 1.09003 * 109.47046 * 60.00650 * 1 2 3 33 33 H 1.09001 * 109.47005 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47548 * 239.99563 * 2 1 3 35 35 H 1.08995 * 109.47253 * 59.99382 * 3 2 1 36 36 H 1.09003 * 109.47079 * 179.97438 * 3 2 1 37 37 H 1.09008 * 109.46855 * 299.99229 * 3 2 1 38 38 H 1.09002 * 109.47115 * 55.00008 * 4 2 1 39 39 H 1.09001 * 109.47478 * 295.00100 * 4 2 1 40 40 H 1.07992 * 126.38921 * 0.02562 * 6 5 4 41 41 H 1.07998 * 127.24478 * 179.97438 * 7 6 5 42 42 H 1.09003 * 108.82833 * 65.39024 * 12 11 9 43 43 H 1.08996 * 108.82722 * 307.07263 * 12 11 9 44 44 H 1.08993 * 109.00183 * 203.59622 * 13 12 11 45 45 H 1.09003 * 108.92922 * 84.79401 * 13 12 11 46 46 H 1.08998 * 110.85484 * 157.05426 * 18 16 14 47 47 H 1.08996 * 110.85860 * 280.69333 * 18 16 14 48 48 H 1.09000 * 109.96703 * 95.28438 * 19 18 16 49 49 H 1.08994 * 109.96820 * 216.51339 * 19 18 16 50 50 H 0.97000 * 119.99299 * 180.02562 * 24 23 21 51 51 H 1.09003 * 108.16500 * 58.82972 * 29 11 9 52 52 H 1.09000 * 108.16360 * 302.24355 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1908 6 6 4.3449 -0.3872 2.1482 7 6 5.6027 -0.6626 1.7300 8 6 5.4535 -1.2893 0.4701 9 6 6.5403 -1.7829 -0.4001 10 8 7.6989 -1.6660 -0.0512 11 7 6.2473 -2.3630 -1.5808 12 6 4.8446 -2.4538 -1.9036 13 6 4.5838 -3.2493 -3.1706 14 6 5.6616 -3.0295 -4.2050 15 1 5.4155 -3.6205 -5.0872 16 6 7.0495 -3.4531 -3.6900 17 1 7.1758 -4.5357 -3.6781 18 6 7.9525 -2.7545 -4.7569 19 6 7.2191 -1.4109 -4.9767 20 7 5.8079 -1.6241 -4.5978 21 6 4.8156 -0.6805 -4.6110 22 1 3.8125 -0.9476 -4.3127 23 6 5.0989 0.6192 -5.0077 24 7 6.3215 0.9448 -5.3706 25 14 3.7450 1.9061 -5.0263 26 1 3.1909 2.0615 -3.6574 27 1 4.3022 3.2041 -5.4846 28 1 2.6660 1.4759 -5.9513 29 6 7.3719 -2.8096 -2.3526 30 7 4.1609 -1.3441 0.2184 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6766 1.9563 0.8899 36 1 3.1301 1.4425 0.0005 37 1 1.6768 1.9563 -0.8901 38 1 1.6053 -1.7197 1.2953 39 1 1.7516 -0.1581 2.1370 40 1 4.0689 0.0940 3.0747 41 1 6.5255 -0.4483 2.2485 42 1 4.4474 -1.4469 -2.0325 43 1 4.3231 -2.9319 -1.0744 44 1 3.6239 -2.9464 -3.5886 45 1 4.5430 -4.3094 -2.9205 46 1 8.9568 -2.5891 -4.3670 47 1 7.9838 -3.3349 -5.6789 48 1 7.6609 -0.6384 -4.3473 49 1 7.2835 -1.1188 -6.0248 50 1 6.5194 1.8531 -5.6475 51 1 7.9298 -3.5302 -1.7546 52 1 8.0206 -1.9528 -2.5351 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036728916.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:27 Heat of formation + Delta-G solvation = 64.687712 kcal Electronic energy + Delta-G solvation = -33213.632497 eV Core-core repulsion = 29215.309448 eV Total energy + Delta-G solvation = -3998.323048 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.64328 -41.57098 -39.60899 -37.41900 -36.60587 -34.77048 -33.42943 -33.11060 -31.77310 -31.16266 -29.49676 -28.16942 -27.83804 -26.82796 -25.66572 -24.20938 -23.61324 -22.30256 -21.86244 -21.24815 -20.54336 -19.53752 -18.54790 -17.99687 -17.80497 -17.49511 -17.03659 -16.88579 -16.57313 -16.00378 -15.73937 -15.68678 -15.15597 -14.85540 -14.63571 -14.52428 -14.38824 -14.08513 -14.04178 -13.91297 -13.83677 -13.22918 -13.13806 -13.03696 -12.97762 -12.90566 -12.72871 -12.49024 -12.29120 -12.22231 -12.09589 -11.99395 -11.88054 -11.62748 -11.55587 -11.42617 -11.39023 -11.22486 -10.96143 -10.66952 -10.13049 -9.99518 -9.40462 -8.81797 -7.80668 -5.11936 0.60791 1.25045 1.37373 1.41009 1.46225 1.61120 2.18404 2.40884 2.48517 3.30539 3.38359 3.54259 3.65337 3.79637 3.81309 3.87232 3.95130 4.03816 4.09041 4.13220 4.20596 4.27660 4.41420 4.53852 4.56046 4.57074 4.57684 4.61169 4.74125 4.77024 4.78802 4.80226 4.85066 4.88066 4.97141 4.98497 5.05610 5.10625 5.17943 5.20601 5.27811 5.34714 5.38570 5.39176 5.43431 5.54874 5.67472 5.78705 5.83462 5.99598 6.22631 6.37783 6.94342 7.12691 7.20966 7.83384 8.50884 9.31254 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008841 B = 0.005460 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.480192 B = 5126.931518 C = 6946.301659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C -0.146 4.146 4 C 0.120 3.880 5 N -0.276 5.276 6 C 0.004 3.996 7 C -0.207 4.207 8 C -0.050 4.050 9 C 0.573 3.427 10 O -0.583 6.583 11 N -0.566 5.566 12 C 0.147 3.853 13 C -0.121 4.121 14 C 0.158 3.842 15 H 0.036 0.964 16 C -0.097 4.097 17 H 0.130 0.870 18 C -0.129 4.129 19 C 0.186 3.814 20 N -0.606 5.606 21 C -0.204 4.204 22 H 0.084 0.916 23 C -0.073 4.073 24 N -0.955 5.955 25 Si 0.961 3.039 26 H -0.283 1.283 27 H -0.303 1.303 28 H -0.273 1.273 29 C 0.146 3.854 30 N -0.259 5.259 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.020 0.980 37 H 0.042 0.958 38 H 0.112 0.888 39 H 0.144 0.856 40 H 0.228 0.772 41 H 0.158 0.842 42 H 0.042 0.958 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.083 0.917 48 H -0.003 1.003 49 H 0.005 0.995 50 H 0.240 0.760 51 H 0.065 0.935 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.029 -7.916 16.144 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 C -0.204 4.204 4 C 0.002 3.998 5 N -0.065 5.065 6 C -0.139 4.139 7 C -0.236 4.236 8 C -0.207 4.207 9 C 0.361 3.639 10 O -0.463 6.463 11 N -0.295 5.295 12 C 0.025 3.975 13 C -0.160 4.160 14 C 0.052 3.948 15 H 0.053 0.947 16 C -0.116 4.116 17 H 0.147 0.853 18 C -0.167 4.167 19 C 0.060 3.940 20 N -0.331 5.331 21 C -0.334 4.334 22 H 0.102 0.898 23 C -0.265 4.265 24 N -0.605 5.605 25 Si 0.791 3.209 26 H -0.209 1.209 27 H -0.229 1.229 28 H -0.198 1.198 29 C 0.023 3.977 30 N -0.096 5.096 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.040 0.960 37 H 0.061 0.939 38 H 0.130 0.870 39 H 0.161 0.839 40 H 0.245 0.755 41 H 0.176 0.824 42 H 0.060 0.940 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.112 0.888 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.015 0.985 49 H 0.024 0.976 50 H 0.049 0.951 51 H 0.083 0.917 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -12.404 -8.037 15.383 21.333 hybrid contribution 0.645 1.885 -0.181 2.001 sum -11.759 -6.152 15.202 20.179 Atomic orbital electron populations 1.21725 0.91360 1.03256 1.03110 1.21398 0.98236 0.95748 0.97597 1.21823 0.99326 0.96630 1.02601 1.22558 0.71463 1.04457 1.01307 1.46136 1.09044 1.39482 1.11823 1.23419 0.88315 1.04065 0.98120 1.21923 0.99607 1.06231 0.95807 1.21781 0.90843 1.09750 0.98358 1.17636 0.87041 0.77766 0.81476 1.90673 1.21138 1.59435 1.75077 1.46351 1.08013 1.57182 1.17945 1.20786 0.78782 1.00438 0.97520 1.21288 0.99670 1.00687 0.94320 1.20544 0.93584 0.85706 0.94976 0.94658 1.22513 0.96503 1.00519 0.92090 0.85254 1.23199 0.98156 0.96348 0.98993 1.21001 0.83990 0.92946 0.96014 1.44578 1.05790 1.05798 1.76917 1.19182 0.89876 0.89039 1.35276 0.89844 1.25494 0.98308 0.99428 1.03284 1.70181 1.19574 1.17786 1.52997 0.85383 0.79052 0.78709 0.77754 1.20906 1.22941 1.19846 1.20295 0.86717 0.97960 0.92719 1.73865 1.04790 1.17383 1.13597 0.90006 0.92942 0.90927 0.92640 0.89579 0.96032 0.93882 0.87001 0.83854 0.75529 0.82403 0.93959 0.89787 0.91057 0.88806 0.90784 0.89806 0.98454 0.97641 0.95119 0.91655 0.95355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.19 71.98 0.66 -1.05 16 2 C -0.11 -2.08 2.95 -10.79 -0.03 -2.11 16 3 C -0.15 -3.32 9.08 71.98 0.65 -2.67 16 4 C 0.12 1.64 5.79 86.38 0.50 2.14 16 5 N -0.28 -6.31 2.86 -347.95 -1.00 -7.31 16 6 C 0.00 0.07 11.40 83.54 0.95 1.02 16 7 C -0.21 -6.16 10.81 22.41 0.24 -5.92 16 8 C -0.05 -1.83 6.74 42.46 0.29 -1.54 16 9 C 0.57 24.80 7.52 86.75 0.65 25.45 16 10 O -0.58 -28.05 16.50 -3.91 -0.06 -28.12 16 11 N -0.57 -23.15 3.19 -842.74 -2.69 -25.84 16 12 C 0.15 5.50 4.23 86.43 0.37 5.87 16 13 C -0.12 -4.09 5.10 29.56 0.15 -3.94 16 14 C 0.16 6.16 2.93 44.64 0.13 6.29 16 15 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 16 C -0.10 -3.31 3.80 -9.70 -0.04 -3.35 16 17 H 0.13 3.32 8.14 -2.39 -0.02 3.31 16 18 C -0.13 -4.83 6.14 32.29 0.20 -4.63 16 19 C 0.19 9.55 4.82 86.72 0.42 9.97 16 20 N -0.61 -30.60 3.04 -673.32 -2.05 -32.65 16 21 C -0.20 -11.32 8.84 84.03 0.74 -10.58 16 22 H 0.08 4.39 6.89 -2.91 -0.02 4.37 16 23 C -0.07 -4.30 5.49 84.86 0.47 -3.83 16 24 N -0.95 -60.43 10.41 21.65 0.23 -60.20 16 25 Si 0.96 47.67 29.55 68.60 2.03 49.69 16 26 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 27 H -0.30 -15.42 7.11 99.48 0.71 -14.72 16 28 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 29 C 0.15 5.75 4.60 86.56 0.40 6.15 16 30 N -0.26 -8.28 7.61 -48.17 -0.37 -8.64 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 1.48 7.95 -2.39 -0.02 1.46 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.02 0.62 7.75 -2.39 -0.02 0.60 16 37 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.14 0.76 8.04 -2.39 -0.02 0.74 16 40 H 0.23 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.16 4.48 8.06 -2.91 -0.02 4.45 16 42 H 0.04 1.89 6.66 -2.39 -0.02 1.88 16 43 H 0.08 2.82 6.37 -2.39 -0.02 2.81 16 44 H 0.07 2.45 7.36 -2.39 -0.02 2.43 16 45 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.07 2.61 7.81 -2.39 -0.02 2.59 16 47 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 48 H 0.00 -0.17 7.13 -2.39 -0.02 -0.19 16 49 H 0.01 0.31 7.58 -2.39 -0.02 0.29 16 50 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 51 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 52 H 0.03 1.33 6.56 -2.39 -0.02 1.31 16 Total: -1.00 -82.31 397.93 3.73 -78.57 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.89 Total: 17.22 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 6.75 Total: 17.28 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -5.87 Total: -134.65 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.06 Total: -28.12 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.69 kcal Total: -82.31 3.73 -78.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036728916.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.261 kcal (2) G-P(sol) polarization free energy of solvation -82.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds