Wall clock time and date at job start Wed Apr 1 2020 04:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46960 * 2 1 4 4 C 1.53000 * 109.46949 * 119.99869 * 2 1 3 5 5 N 1.46500 * 109.47454 * 65.63654 * 4 2 1 6 6 N 1.28442 * 125.18779 * 273.66810 * 5 4 2 7 7 C 1.30872 * 110.92402 * 180.02562 * 6 5 4 8 8 C 1.39670 * 107.85901 * 359.76930 * 7 6 5 9 9 C 1.36604 * 125.18849 * 93.67952 * 5 4 2 10 10 C 1.47155 * 126.88568 * 359.95070 * 9 5 4 11 11 O 1.21634 * 119.99847 * 337.63379 * 10 9 5 12 12 N 1.34775 * 120.00052 * 157.63407 * 10 9 5 13 13 C 1.46601 * 119.68735 * 353.13805 * 12 10 9 14 14 C 1.53948 * 110.58224 * 227.80032 * 13 12 10 15 15 C 1.51519 * 107.35215 * 308.94577 * 14 13 12 16 16 H 1.09001 * 109.28608 * 306.29152 * 15 14 13 17 17 C 1.55369 * 107.78077 * 64.85306 * 15 14 13 18 18 H 1.09004 * 111.50675 * 51.16941 * 17 15 14 19 19 C 1.53738 * 100.22458 * 169.06536 * 17 15 14 20 20 C 1.55288 * 101.84064 * 320.90846 * 19 17 15 21 21 N 1.45472 * 117.34411 * 181.88721 * 15 14 13 22 22 C 1.36934 * 126.39970 * 30.62678 * 21 15 14 23 23 H 1.07994 * 120.00450 * 0.02562 * 22 21 15 24 24 C 1.38813 * 119.99430 * 179.97438 * 22 21 15 25 25 N 1.31621 * 120.00331 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99762 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47620 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47069 * 120.00374 * 26 24 22 29 29 H 1.48501 * 109.47397 * 240.00120 * 26 24 22 30 30 C 1.47722 * 119.68532 * 172.86929 * 12 10 9 31 31 H 1.09004 * 109.46526 * 60.00508 * 1 2 3 32 32 H 1.09004 * 109.46962 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47175 * 299.99955 * 1 2 3 34 34 H 1.08995 * 109.47524 * 239.99715 * 2 1 3 35 35 H 1.09007 * 109.46696 * 184.91895 * 3 2 1 36 36 H 1.08999 * 109.47029 * 304.91635 * 3 2 1 37 37 H 1.09001 * 109.46951 * 64.92203 * 3 2 1 38 38 H 1.09004 * 109.47088 * 305.63878 * 4 2 1 39 39 H 1.09006 * 109.47122 * 185.63840 * 4 2 1 40 40 H 1.08001 * 126.06754 * 180.02562 * 7 6 5 41 41 H 1.08004 * 127.31615 * 180.27045 * 8 7 6 42 42 H 1.09000 * 109.24901 * 348.08236 * 13 12 10 43 43 H 1.08994 * 109.25054 * 107.51566 * 13 12 10 44 44 H 1.08991 * 109.88455 * 68.41431 * 14 13 12 45 45 H 1.09010 * 109.87894 * 189.49050 * 14 13 12 46 46 H 1.09000 * 110.95391 * 79.04137 * 19 17 15 47 47 H 1.08998 * 110.95937 * 202.76621 * 19 17 15 48 48 H 1.09001 * 109.92161 * 141.82561 * 20 19 17 49 49 H 1.08997 * 109.92211 * 262.93140 * 20 19 17 50 50 H 0.96995 * 119.99931 * 179.97438 * 25 24 22 51 51 H 1.09007 * 110.06649 * 247.17406 * 30 12 10 52 52 H 1.08999 * 110.07393 * 8.74551 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6656 -2.1361 1.1835 6 7 0.5469 -2.6250 1.5825 7 6 0.5085 -3.9194 1.3932 8 6 1.7185 -4.3032 0.8107 9 6 2.4531 -3.1365 0.6886 10 6 3.8083 -3.0003 0.1316 11 8 4.1838 -1.9264 -0.2987 12 7 4.6335 -4.0654 0.0984 13 6 4.2332 -5.3146 0.7530 14 6 5.3778 -5.8585 1.6271 15 6 6.6245 -5.8964 0.7668 16 1 6.4164 -6.4574 -0.1443 17 6 6.9882 -4.4327 0.3937 18 1 7.0288 -3.7937 1.2759 19 6 8.3872 -4.6439 -0.2077 20 6 8.9812 -5.7225 0.7384 21 7 7.8387 -6.4207 1.3727 22 6 7.9118 -7.3798 2.3473 23 1 7.0077 -7.8225 2.7382 24 6 9.1483 -7.7838 2.8320 25 7 10.2503 -7.2446 2.3552 26 14 9.2481 -9.0916 4.1621 27 1 7.8778 -9.5341 4.5251 28 1 10.0252 -10.2522 3.6577 29 1 9.9207 -8.5287 5.3604 30 6 5.9300 -3.9648 -0.6023 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.1265 1.4438 -0.0881 36 1 1.6065 1.9811 -0.8427 37 1 1.7504 1.9303 0.9308 38 1 1.5965 -0.2690 2.1364 39 1 3.1253 -0.6346 1.3012 40 1 -0.3146 -4.5739 1.6396 41 1 2.0179 -5.2990 0.5189 42 1 3.3602 -5.1288 1.3786 43 1 3.9793 -6.0533 -0.0072 44 1 5.5367 -5.2005 2.4813 45 1 5.1351 -6.8636 1.9723 46 1 8.3199 -5.0164 -1.2299 47 1 8.9719 -3.7249 -0.1671 48 1 9.5777 -6.4319 0.1647 49 1 9.5998 -5.2483 1.5003 50 1 11.1142 -7.5266 2.6943 51 1 5.9304 -4.6081 -1.4823 52 1 6.1190 -2.9314 -0.8929 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036729064.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:47 Heat of formation + Delta-G solvation = 62.766111 kcal Electronic energy + Delta-G solvation = -31858.890143 eV Core-core repulsion = 27860.483768 eV Total energy + Delta-G solvation = -3998.406375 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.62620 -41.31721 -39.58454 -37.61305 -36.80628 -34.63669 -33.08253 -33.01104 -32.39166 -31.03401 -29.47287 -28.10443 -27.60287 -26.76516 -25.61068 -23.99945 -23.16466 -22.52985 -21.88496 -21.68515 -21.01692 -20.14783 -18.74560 -18.01483 -17.59987 -17.18065 -16.95249 -16.67142 -16.24859 -15.95368 -15.82746 -15.66666 -15.25393 -15.07476 -14.74396 -14.65344 -14.51846 -14.06569 -13.98133 -13.83131 -13.70308 -13.32419 -13.19258 -13.11121 -13.03988 -12.92994 -12.72340 -12.47642 -12.29658 -12.12094 -11.99325 -11.95415 -11.80298 -11.75568 -11.68898 -11.57258 -11.44827 -11.12873 -10.95413 -10.70784 -10.20097 -9.88304 -9.72768 -8.85673 -7.82353 -5.16375 0.25267 1.30590 1.46925 1.47192 1.57172 1.67541 1.97875 2.09146 2.51449 3.25810 3.36955 3.50839 3.52290 3.69321 3.83247 3.87604 3.96145 4.00175 4.03955 4.18386 4.22068 4.23983 4.32785 4.38381 4.48053 4.53780 4.60750 4.61527 4.67345 4.71609 4.74916 4.81717 4.82448 4.85778 4.91019 4.91194 4.96260 5.03509 5.09045 5.12817 5.22398 5.30465 5.33323 5.43989 5.53586 5.55650 5.57530 5.67506 5.78088 5.78687 6.21848 6.22947 6.91267 7.10900 7.12098 7.81307 8.49818 9.29843 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018067 B = 0.002682 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.423823 B =10436.428625 C =11318.489315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 C -0.138 4.138 4 C 0.121 3.879 5 N -0.261 5.261 6 N -0.290 5.290 7 C -0.006 4.006 8 C -0.188 4.188 9 C -0.057 4.057 10 C 0.584 3.416 11 O -0.569 6.569 12 N -0.590 5.590 13 C 0.098 3.902 14 C -0.122 4.122 15 C 0.156 3.844 16 H 0.029 0.971 17 C -0.109 4.109 18 H 0.059 0.941 19 C -0.121 4.121 20 C 0.181 3.819 21 N -0.616 5.616 22 C -0.225 4.225 23 H 0.089 0.911 24 C -0.073 4.073 25 N -0.955 5.955 26 Si 0.972 3.028 27 H -0.261 1.261 28 H -0.295 1.295 29 H -0.298 1.298 30 C 0.138 3.862 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.218 0.782 41 H 0.192 0.808 42 H 0.120 0.880 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.005 0.995 49 H 0.014 0.986 50 H 0.244 0.756 51 H 0.093 0.907 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.149 11.356 -6.016 24.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 C -0.196 4.196 4 C 0.002 3.998 5 N -0.048 5.048 6 N -0.122 5.122 7 C -0.181 4.181 8 C -0.216 4.216 9 C -0.185 4.185 10 C 0.372 3.628 11 O -0.449 6.449 12 N -0.321 5.321 13 C -0.024 4.024 14 C -0.161 4.161 15 C 0.050 3.950 16 H 0.046 0.954 17 C -0.130 4.130 18 H 0.077 0.923 19 C -0.159 4.159 20 C 0.057 3.943 21 N -0.341 5.341 22 C -0.354 4.354 23 H 0.107 0.893 24 C -0.265 4.265 25 N -0.605 5.605 26 Si 0.802 3.198 27 H -0.185 1.185 28 H -0.223 1.223 29 H -0.226 1.226 30 C 0.017 3.983 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.112 0.888 40 H 0.234 0.766 41 H 0.209 0.791 42 H 0.138 0.862 43 H 0.114 0.886 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.094 0.906 48 H 0.023 0.977 49 H 0.032 0.968 50 H 0.053 0.947 51 H 0.111 0.889 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.385 12.820 -5.696 25.576 hybrid contribution 1.563 -1.553 0.610 2.286 sum -19.822 11.267 -5.086 23.361 Atomic orbital electron populations 1.21810 0.93663 1.01701 1.02614 1.21336 0.97044 0.97392 0.96107 1.21716 1.01123 0.93416 1.03348 1.22323 1.01830 0.74393 1.01296 1.45891 1.09212 1.08324 1.41413 1.73189 1.05293 1.13802 1.19918 1.24208 1.00059 0.90920 1.02905 1.22889 0.94838 0.98585 1.05331 1.21463 0.95476 0.90888 1.10666 1.17224 0.83386 0.83717 0.78430 1.90762 1.76911 1.27079 1.50127 1.48012 1.18219 1.12675 1.53227 1.22591 0.97964 0.84777 0.97053 1.21817 0.94803 1.01457 0.98072 1.20926 0.87499 0.91905 0.94705 0.95395 1.22542 0.94791 0.97308 0.98335 0.92268 1.22581 0.95393 0.98880 0.99089 1.21292 0.89041 0.91356 0.92659 1.44520 1.01780 1.44009 1.43771 1.19453 0.92908 1.11744 1.11285 0.89319 1.25621 0.95399 1.02737 1.02735 1.70172 0.96954 1.46786 1.46624 0.85081 0.77962 0.78374 0.78415 1.18499 1.22272 1.22556 1.21662 0.79610 1.03209 0.93863 0.91722 0.93712 0.91494 0.92521 0.92825 0.91011 0.90968 0.87156 0.88823 0.76563 0.79070 0.86230 0.88608 0.93443 0.90215 0.90011 0.90557 0.97719 0.96767 0.94694 0.88902 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.98 71.98 0.65 -1.67 16 2 C -0.10 -1.84 3.12 -10.79 -0.03 -1.87 16 3 C -0.14 -2.00 9.19 71.98 0.66 -1.34 16 4 C 0.12 2.49 5.15 86.38 0.44 2.93 16 5 N -0.26 -6.07 3.11 -334.68 -1.04 -7.12 16 6 N -0.29 -6.35 10.58 -57.14 -0.60 -6.96 16 7 C -0.01 -0.10 12.03 85.18 1.02 0.93 16 8 C -0.19 -3.46 8.59 22.66 0.19 -3.26 16 9 C -0.06 -1.37 6.49 40.78 0.26 -1.10 16 10 C 0.58 16.09 7.48 86.58 0.65 16.74 16 11 O -0.57 -18.17 14.59 -4.14 -0.06 -18.23 16 12 N -0.59 -15.18 2.99 -821.39 -2.46 -17.64 16 13 C 0.10 2.18 4.88 86.68 0.42 2.61 16 14 C -0.12 -3.79 5.48 30.43 0.17 -3.62 16 15 C 0.16 5.84 2.55 45.51 0.12 5.96 16 16 H 0.03 1.04 7.94 -2.39 -0.02 1.02 16 17 C -0.11 -3.67 2.87 -9.84 -0.03 -3.69 16 18 H 0.06 2.24 8.12 -2.39 -0.02 2.22 16 19 C -0.12 -4.29 6.54 31.63 0.21 -4.08 16 20 C 0.18 8.88 5.45 86.85 0.47 9.35 16 21 N -0.62 -30.43 3.35 -669.90 -2.24 -32.67 16 22 C -0.22 -12.11 9.88 84.03 0.83 -11.28 16 23 H 0.09 4.48 7.21 -2.91 -0.02 4.46 16 24 C -0.07 -4.09 5.49 84.86 0.47 -3.63 16 25 N -0.96 -57.70 10.44 21.65 0.23 -57.48 16 26 Si 0.97 45.38 29.55 68.60 2.03 47.40 16 27 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 29 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 30 C 0.14 3.72 6.00 86.03 0.52 4.24 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.04 0.89 6.77 -2.38 -0.02 0.87 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.09 2.18 6.72 -2.38 -0.02 2.17 16 40 H 0.22 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.19 2.50 5.96 -2.91 -0.02 2.48 16 42 H 0.12 2.29 4.12 -2.39 -0.01 2.28 16 43 H 0.10 1.70 8.04 -2.39 -0.02 1.69 16 44 H 0.05 1.65 8.12 -2.39 -0.02 1.63 16 45 H 0.08 2.45 7.62 -2.38 -0.02 2.43 16 46 H 0.08 2.55 8.11 -2.39 -0.02 2.53 16 47 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 48 H 0.00 0.25 7.77 -2.39 -0.02 0.23 16 49 H 0.01 0.79 7.21 -2.39 -0.02 0.77 16 50 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 51 H 0.09 2.18 8.08 -2.38 -0.02 2.16 16 52 H 0.09 2.53 6.98 -2.39 -0.02 2.52 16 Total: -1.00 -71.10 396.41 3.77 -67.33 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.90 Total: 18.16 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 7.02 Total: 7.20 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -6.12 Total: -121.86 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.06 Total: -18.23 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -71.10 3.77 -67.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036729064.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.093 kcal (2) G-P(sol) polarization free energy of solvation -71.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds