Wall clock time and date at job start Wed Apr 1 2020 04:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46994 * 2 1 4 4 C 1.52997 * 109.46735 * 119.99832 * 2 1 3 5 5 N 1.46506 * 109.47422 * 65.60711 * 4 2 1 6 6 N 1.28438 * 125.18959 * 264.18071 * 5 4 2 7 7 C 1.30863 * 110.92716 * 179.81409 * 6 5 4 8 8 C 1.39669 * 107.86270 * 0.43758 * 7 6 5 9 9 C 1.36593 * 125.18890 * 84.47792 * 5 4 2 10 10 C 1.47158 * 126.88692 * 0.02562 * 9 5 4 11 11 O 1.21629 * 120.00316 * 24.90393 * 10 9 5 12 12 N 1.34781 * 120.00260 * 204.89662 * 10 9 5 13 13 C 1.46601 * 119.67984 * 359.40892 * 12 10 9 14 14 C 1.53952 * 110.57470 * 132.14908 * 13 12 10 15 15 C 1.51515 * 107.34946 * 51.05248 * 14 13 12 16 16 H 1.08997 * 109.28419 * 53.69456 * 15 14 13 17 17 C 1.55370 * 107.79148 * 295.14252 * 15 14 13 18 18 H 1.08995 * 111.51186 * 308.80902 * 17 15 14 19 19 C 1.53432 * 100.35795 * 190.35614 * 17 15 14 20 20 C 1.55281 * 101.42158 * 39.94938 * 19 17 15 21 21 N 1.45465 * 117.35284 * 178.76732 * 15 14 13 22 22 C 1.36937 * 126.40930 * 329.34086 * 21 15 14 23 23 H 1.08005 * 119.99412 * 0.02562 * 22 21 15 24 24 C 1.38807 * 120.00383 * 180.02562 * 22 21 15 25 25 N 1.31620 * 119.99914 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00103 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47360 * 89.99402 * 26 24 22 28 28 H 1.48496 * 109.47096 * 209.99824 * 26 24 22 29 29 H 1.48501 * 109.46894 * 329.99481 * 26 24 22 30 30 C 1.47718 * 119.68358 * 179.12601 * 12 10 9 31 31 H 1.09001 * 109.46631 * 60.00621 * 1 2 3 32 32 H 1.08998 * 109.47269 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47211 * 300.00519 * 1 2 3 34 34 H 1.08996 * 109.46696 * 239.99566 * 2 1 3 35 35 H 1.09007 * 109.46862 * 184.94259 * 3 2 1 36 36 H 1.09002 * 109.46805 * 304.93775 * 3 2 1 37 37 H 1.08994 * 109.47209 * 64.94098 * 3 2 1 38 38 H 1.08997 * 109.47479 * 305.60731 * 4 2 1 39 39 H 1.09003 * 109.47287 * 185.60031 * 4 2 1 40 40 H 1.08008 * 126.06875 * 180.17959 * 7 6 5 41 41 H 1.07993 * 127.32524 * 179.77436 * 8 7 6 42 42 H 1.09005 * 109.25388 * 252.42558 * 13 12 10 43 43 H 1.08994 * 109.26013 * 11.86133 * 13 12 10 44 44 H 1.09004 * 109.88035 * 170.51151 * 14 13 12 45 45 H 1.09002 * 109.88190 * 291.58824 * 14 13 12 46 46 H 1.09004 * 111.57160 * 281.77027 * 19 17 15 47 47 H 1.08997 * 110.72897 * 157.76685 * 19 17 15 48 48 H 1.08994 * 109.92161 * 217.68370 * 20 19 17 49 49 H 1.08999 * 110.08803 * 96.47536 * 20 19 17 50 50 H 0.97002 * 119.99952 * 180.02562 * 25 24 22 51 51 H 1.08994 * 110.07185 * 351.30105 * 30 12 10 52 52 H 1.09002 * 110.06550 * 112.87492 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6649 -2.1359 1.1838 6 7 0.6260 -2.6525 1.7347 7 6 0.5601 -3.9374 1.4953 8 6 1.6695 -4.2866 0.7220 9 6 2.3698 -3.1078 0.5324 10 6 3.6229 -2.9362 -0.2199 11 8 4.3674 -2.0107 0.0417 12 7 3.9457 -3.8047 -1.1987 13 6 3.0496 -4.9253 -1.4995 14 6 2.8023 -5.0285 -3.0155 15 6 4.1562 -5.0228 -3.6956 16 1 4.7798 -5.8050 -3.2627 17 6 4.8143 -3.6404 -3.4316 18 1 4.1416 -2.8220 -3.6879 19 6 6.0087 -3.7156 -4.3917 20 6 5.3667 -4.4017 -5.6280 21 7 4.1763 -5.1402 -5.1454 22 6 3.2659 -5.8089 -5.9194 23 1 2.4320 -6.3153 -5.4562 24 6 3.4149 -5.8360 -7.2992 25 7 4.4309 -5.2184 -7.8637 26 14 2.1725 -6.7476 -8.3551 27 1 1.0768 -5.8224 -8.7403 28 1 2.8423 -7.2582 -9.5781 29 1 1.6108 -7.8871 -7.5860 30 6 5.1958 -3.6146 -1.9624 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 3.1265 1.4437 -0.0885 36 1 1.6062 1.9811 -0.8425 37 1 1.7508 1.9301 0.9309 38 1 1.5970 -0.2686 2.1364 39 1 3.1254 -0.6352 1.3009 40 1 -0.2126 -4.6094 1.8387 41 1 1.9261 -5.2676 0.3504 42 1 3.5015 -5.8519 -1.1452 43 1 2.0986 -4.7720 -0.9896 44 1 2.2770 -5.9561 -3.2431 45 1 2.2138 -4.1756 -3.3539 46 1 6.8144 -4.3250 -3.9822 47 1 6.3661 -2.7167 -4.6419 48 1 6.0768 -5.0954 -6.0782 49 1 5.0668 -3.6510 -6.3591 50 1 4.5348 -5.2370 -8.8279 51 1 5.6455 -2.6542 -1.7107 52 1 5.8932 -4.4238 -1.7456 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036729065.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:54 Heat of formation + Delta-G solvation = 85.212085 kcal Electronic energy + Delta-G solvation = -32196.831892 eV Core-core repulsion = 28199.398848 eV Total energy + Delta-G solvation = -3997.433045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.76502 -40.10247 -38.23117 -36.80257 -35.51423 -32.96430 -32.16426 -31.65942 -31.24033 -29.45921 -28.01626 -27.41339 -26.79726 -25.21396 -24.09319 -22.73689 -22.06222 -21.58466 -20.91078 -20.08430 -19.71714 -19.12950 -17.29548 -16.79195 -16.30349 -16.10265 -15.79156 -15.34710 -15.03660 -14.90370 -14.49077 -14.38255 -14.08651 -13.90389 -13.72688 -13.55752 -13.14880 -13.02338 -12.82858 -12.57541 -12.52116 -12.31082 -12.21377 -11.70832 -11.57835 -11.51839 -11.41904 -11.24489 -11.03892 -10.97264 -10.84550 -10.76277 -10.60725 -10.21674 -10.13082 -9.96502 -9.86841 -9.65331 -9.51390 -9.27934 -8.99217 -8.64771 -8.60065 -6.86303 -5.73827 -3.07133 1.21541 2.18841 2.50487 2.99695 3.12248 3.37972 3.43025 3.44974 4.25950 4.32242 4.45707 4.47204 4.67861 4.76736 4.99296 5.03045 5.05114 5.09513 5.19709 5.25339 5.30396 5.36670 5.38597 5.44362 5.51767 5.54767 5.55779 5.59060 5.62493 5.67680 5.77589 5.83258 5.84967 5.96881 5.98318 6.03935 6.10963 6.14965 6.19827 6.28512 6.35780 6.43627 6.57365 6.60994 6.61962 6.78066 7.03250 7.32805 7.52779 7.58620 7.78695 7.92008 8.06532 8.22017 9.16942 9.80666 10.48418 11.38653 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.003005 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.817529 B = 9315.649819 C = 9585.071241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.142 4.142 4 C 0.118 3.882 5 N -0.253 5.253 6 N -0.278 5.278 7 C -0.005 4.005 8 C -0.203 4.203 9 C -0.028 4.028 10 C 0.586 3.414 11 O -0.548 6.548 12 N -0.585 5.585 13 C 0.076 3.924 14 C -0.128 4.128 15 C 0.167 3.833 16 H 0.021 0.979 17 C -0.124 4.124 18 H 0.080 0.920 19 C -0.136 4.136 20 C 0.177 3.823 21 N -0.595 5.595 22 C -0.226 4.226 23 H 0.079 0.921 24 C -0.008 4.008 25 N -0.921 5.921 26 Si 0.909 3.091 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 C 0.128 3.872 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.186 0.814 41 H 0.174 0.826 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.038 0.962 49 H 0.055 0.945 50 H 0.252 0.748 51 H 0.091 0.909 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.182 6.876 18.560 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 C -0.200 4.200 4 C -0.002 4.002 5 N -0.040 5.040 6 N -0.110 5.110 7 C -0.181 4.181 8 C -0.231 4.231 9 C -0.157 4.157 10 C 0.372 3.628 11 O -0.427 6.427 12 N -0.317 5.317 13 C -0.046 4.046 14 C -0.167 4.167 15 C 0.058 3.942 16 H 0.038 0.962 17 C -0.145 4.145 18 H 0.098 0.902 19 C -0.175 4.175 20 C 0.052 3.948 21 N -0.319 5.319 22 C -0.354 4.354 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.569 5.569 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 C 0.007 3.993 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.133 0.867 40 H 0.203 0.797 41 H 0.191 0.809 42 H 0.087 0.913 43 H 0.128 0.872 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.056 0.944 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.109 0.891 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.320 8.304 18.979 21.162 hybrid contribution -0.303 -1.327 -1.172 1.796 sum -4.623 6.978 17.807 19.677 Atomic orbital electron populations 1.21850 0.94224 1.02402 1.01934 1.21459 0.96911 0.97049 0.97451 1.21739 1.01717 0.94271 1.02310 1.22360 1.03103 0.74425 1.00300 1.45734 1.15249 1.08475 1.34536 1.73191 1.07018 1.11992 1.18816 1.23599 1.00638 0.91719 1.02186 1.22620 0.96977 0.98614 1.04924 1.21431 0.98409 0.90374 1.05472 1.17003 0.83763 0.82157 0.79839 1.90751 1.52072 1.32263 1.67580 1.48019 1.22985 1.27414 1.33264 1.22786 0.95181 0.88402 0.98241 1.21877 0.99545 1.02925 0.92368 1.20667 0.93529 0.93149 0.86809 0.96179 1.22526 0.99209 1.00311 0.92422 0.90166 1.22657 0.96288 1.00441 0.98094 1.21533 0.87615 0.94515 0.91110 1.44220 1.27685 1.60821 0.99222 1.18994 1.03168 1.25195 0.88072 0.90368 1.24787 0.98295 1.00730 0.96583 1.69938 1.30271 1.47123 1.09541 0.86159 0.80427 0.79239 0.80189 1.21667 1.21705 1.20684 1.21629 0.84333 1.02819 0.90548 0.92333 0.92384 0.92374 0.90478 0.91872 0.91759 0.92329 0.88242 0.86663 0.79745 0.80907 0.91258 0.87162 0.90388 0.91459 0.92161 0.92066 0.94396 0.92687 0.93762 0.89079 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.07 37.16 0.34 -1.11 16 2 C -0.11 -1.12 3.12 -90.62 -0.28 -1.40 16 3 C -0.14 -1.19 9.19 37.15 0.34 -0.84 16 4 C 0.12 1.26 5.32 -4.04 -0.02 1.24 16 5 N -0.25 -3.15 2.94 -57.14 -0.17 -3.32 16 6 N -0.28 -3.40 11.24 30.59 0.34 -3.05 16 7 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 8 C -0.20 -2.22 8.65 -38.98 -0.34 -2.56 16 9 C -0.03 -0.37 6.57 -82.06 -0.54 -0.91 16 10 C 0.59 8.57 7.56 -12.64 -0.10 8.48 16 11 O -0.55 -9.01 14.43 5.25 0.08 -8.94 16 12 N -0.59 -8.25 3.01 -174.11 -0.52 -8.77 16 13 C 0.08 0.97 5.14 -3.49 -0.02 0.95 16 14 C -0.13 -2.09 5.47 -26.99 -0.15 -2.23 16 15 C 0.17 3.20 2.58 -67.98 -0.18 3.03 16 16 H 0.02 0.41 7.95 -51.93 -0.41 -0.01 16 17 C -0.12 -2.14 2.83 -89.74 -0.25 -2.39 16 18 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 19 C -0.14 -2.44 6.51 -25.30 -0.16 -2.61 16 20 C 0.18 4.16 5.44 -1.92 -0.01 4.15 16 21 N -0.60 -14.48 3.34 -163.10 -0.55 -15.02 16 22 C -0.23 -6.03 9.88 -15.06 -0.15 -6.18 16 23 H 0.08 1.99 7.24 -52.48 -0.38 1.62 16 24 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 25 N -0.92 -26.60 10.43 55.49 0.58 -26.02 16 26 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 C 0.13 1.88 5.90 -3.98 -0.02 1.85 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.67 7.21 -51.93 -0.37 0.29 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.12 1.33 6.42 -51.93 -0.33 0.99 16 40 H 0.19 1.32 8.06 -52.48 -0.42 0.90 16 41 H 0.17 1.52 5.80 -52.49 -0.30 1.22 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.11 1.24 3.46 -51.93 -0.18 1.06 16 44 H 0.08 1.27 7.65 -51.93 -0.40 0.88 16 45 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 46 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 49 H 0.05 1.45 7.20 -51.93 -0.37 1.08 16 50 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 51 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 52 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 LS Contribution 396.78 15.07 5.98 5.98 Total: -1.00 -31.42 396.78 -9.70 -41.12 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.57 Total: 2.47 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.85 Total: -1.10 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.31 Total: -56.19 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.42 -9.70 -41.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036729065.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.334 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds