Wall clock time and date at job start Wed Apr 1 2020 04:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46994 * 2 1 4 4 C 1.52997 * 109.46735 * 119.99832 * 2 1 3 5 5 N 1.46506 * 109.47422 * 65.60711 * 4 2 1 6 6 N 1.28438 * 125.18959 * 264.18071 * 5 4 2 7 7 C 1.30863 * 110.92716 * 179.81409 * 6 5 4 8 8 C 1.39669 * 107.86270 * 0.43758 * 7 6 5 9 9 C 1.36593 * 125.18890 * 84.47792 * 5 4 2 10 10 C 1.47158 * 126.88692 * 0.02562 * 9 5 4 11 11 O 1.21629 * 120.00316 * 24.90393 * 10 9 5 12 12 N 1.34781 * 120.00260 * 204.89662 * 10 9 5 13 13 C 1.46601 * 119.67984 * 359.40892 * 12 10 9 14 14 C 1.53952 * 110.57470 * 132.14908 * 13 12 10 15 15 C 1.51515 * 107.34946 * 51.05248 * 14 13 12 16 16 H 1.08997 * 109.28419 * 53.69456 * 15 14 13 17 17 C 1.55370 * 107.79148 * 295.14252 * 15 14 13 18 18 H 1.08995 * 111.51186 * 308.80902 * 17 15 14 19 19 C 1.53432 * 100.35795 * 190.35614 * 17 15 14 20 20 C 1.55281 * 101.42158 * 39.94938 * 19 17 15 21 21 N 1.45465 * 117.35284 * 178.76732 * 15 14 13 22 22 C 1.36937 * 126.40930 * 329.34086 * 21 15 14 23 23 H 1.08005 * 119.99412 * 0.02562 * 22 21 15 24 24 C 1.38807 * 120.00383 * 180.02562 * 22 21 15 25 25 N 1.31620 * 119.99914 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00103 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47360 * 89.99402 * 26 24 22 28 28 H 1.48496 * 109.47096 * 209.99824 * 26 24 22 29 29 H 1.48501 * 109.46894 * 329.99481 * 26 24 22 30 30 C 1.47718 * 119.68358 * 179.12601 * 12 10 9 31 31 H 1.09001 * 109.46631 * 60.00621 * 1 2 3 32 32 H 1.08998 * 109.47269 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47211 * 300.00519 * 1 2 3 34 34 H 1.08996 * 109.46696 * 239.99566 * 2 1 3 35 35 H 1.09007 * 109.46862 * 184.94259 * 3 2 1 36 36 H 1.09002 * 109.46805 * 304.93775 * 3 2 1 37 37 H 1.08994 * 109.47209 * 64.94098 * 3 2 1 38 38 H 1.08997 * 109.47479 * 305.60731 * 4 2 1 39 39 H 1.09003 * 109.47287 * 185.60031 * 4 2 1 40 40 H 1.08008 * 126.06875 * 180.17959 * 7 6 5 41 41 H 1.07993 * 127.32524 * 179.77436 * 8 7 6 42 42 H 1.09005 * 109.25388 * 252.42558 * 13 12 10 43 43 H 1.08994 * 109.26013 * 11.86133 * 13 12 10 44 44 H 1.09004 * 109.88035 * 170.51151 * 14 13 12 45 45 H 1.09002 * 109.88190 * 291.58824 * 14 13 12 46 46 H 1.09004 * 111.57160 * 281.77027 * 19 17 15 47 47 H 1.08997 * 110.72897 * 157.76685 * 19 17 15 48 48 H 1.08994 * 109.92161 * 217.68370 * 20 19 17 49 49 H 1.08999 * 110.08803 * 96.47536 * 20 19 17 50 50 H 0.97002 * 119.99952 * 180.02562 * 25 24 22 51 51 H 1.08994 * 110.07185 * 351.30105 * 30 12 10 52 52 H 1.09002 * 110.06550 * 112.87492 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6649 -2.1359 1.1838 6 7 0.6260 -2.6525 1.7347 7 6 0.5601 -3.9374 1.4953 8 6 1.6695 -4.2866 0.7220 9 6 2.3698 -3.1078 0.5324 10 6 3.6229 -2.9362 -0.2199 11 8 4.3674 -2.0107 0.0417 12 7 3.9457 -3.8047 -1.1987 13 6 3.0496 -4.9253 -1.4995 14 6 2.8023 -5.0285 -3.0155 15 6 4.1562 -5.0228 -3.6956 16 1 4.7798 -5.8050 -3.2627 17 6 4.8143 -3.6404 -3.4316 18 1 4.1416 -2.8220 -3.6879 19 6 6.0087 -3.7156 -4.3917 20 6 5.3667 -4.4017 -5.6280 21 7 4.1763 -5.1402 -5.1454 22 6 3.2659 -5.8089 -5.9194 23 1 2.4320 -6.3153 -5.4562 24 6 3.4149 -5.8360 -7.2992 25 7 4.4309 -5.2184 -7.8637 26 14 2.1725 -6.7476 -8.3551 27 1 1.0768 -5.8224 -8.7403 28 1 2.8423 -7.2582 -9.5781 29 1 1.6108 -7.8871 -7.5860 30 6 5.1958 -3.6146 -1.9624 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 3.1265 1.4437 -0.0885 36 1 1.6062 1.9811 -0.8425 37 1 1.7508 1.9301 0.9309 38 1 1.5970 -0.2686 2.1364 39 1 3.1254 -0.6352 1.3009 40 1 -0.2126 -4.6094 1.8387 41 1 1.9261 -5.2676 0.3504 42 1 3.5015 -5.8519 -1.1452 43 1 2.0986 -4.7720 -0.9896 44 1 2.2770 -5.9561 -3.2431 45 1 2.2138 -4.1756 -3.3539 46 1 6.8144 -4.3250 -3.9822 47 1 6.3661 -2.7167 -4.6419 48 1 6.0768 -5.0954 -6.0782 49 1 5.0668 -3.6510 -6.3591 50 1 4.5348 -5.2370 -8.8279 51 1 5.6455 -2.6542 -1.7107 52 1 5.8932 -4.4238 -1.7456 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036729065.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:52 Heat of formation + Delta-G solvation = 67.564323 kcal Electronic energy + Delta-G solvation = -32197.597157 eV Core-core repulsion = 28199.398848 eV Total energy + Delta-G solvation = -3998.198309 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.64590 -41.35538 -39.61615 -37.65618 -36.84264 -34.67634 -33.13323 -33.02061 -32.39371 -31.05877 -29.47413 -28.16216 -27.63001 -26.77926 -25.61271 -24.03711 -23.16938 -22.57209 -21.87631 -21.71634 -21.05074 -20.20751 -18.70685 -17.98112 -17.68711 -17.13350 -16.94393 -16.69172 -16.35535 -15.97097 -15.82923 -15.70654 -15.29267 -15.14820 -14.76176 -14.66843 -14.55676 -14.06936 -13.98778 -13.82769 -13.71474 -13.32681 -13.21715 -13.09700 -13.01642 -12.95136 -12.68054 -12.43328 -12.37158 -12.16423 -12.02520 -11.99809 -11.84624 -11.78765 -11.70798 -11.59145 -11.39755 -11.12614 -10.95167 -10.69776 -10.19907 -9.88712 -9.75228 -8.85858 -7.82042 -5.16251 0.25360 1.27071 1.47014 1.48202 1.56570 1.68037 1.97739 2.08472 2.51748 3.25073 3.37047 3.49070 3.51517 3.66896 3.82739 3.86722 3.90549 3.98641 3.99994 4.17034 4.21358 4.24578 4.30955 4.37929 4.45899 4.52980 4.56612 4.60618 4.67050 4.69823 4.72572 4.79319 4.81736 4.84881 4.85582 4.90838 4.91571 5.02746 5.08318 5.08543 5.21730 5.24393 5.26906 5.42926 5.52881 5.55001 5.56083 5.67327 5.77586 5.77919 6.21315 6.22573 6.90475 7.10843 7.11360 7.81367 8.49816 9.29823 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.003005 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.817529 B = 9315.649819 C = 9585.071241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C -0.139 4.139 4 C 0.117 3.883 5 N -0.260 5.260 6 N -0.291 5.291 7 C -0.004 4.004 8 C -0.194 4.194 9 C -0.055 4.055 10 C 0.586 3.414 11 O -0.572 6.572 12 N -0.588 5.588 13 C 0.085 3.915 14 C -0.121 4.121 15 C 0.157 3.843 16 H 0.028 0.972 17 C -0.109 4.109 18 H 0.059 0.941 19 C -0.121 4.121 20 C 0.181 3.819 21 N -0.616 5.616 22 C -0.228 4.228 23 H 0.089 0.911 24 C -0.070 4.070 25 N -0.955 5.955 26 Si 0.973 3.027 27 H -0.290 1.290 28 H -0.299 1.299 29 H -0.265 1.265 30 C 0.137 3.863 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.219 0.781 41 H 0.198 0.802 42 H 0.096 0.904 43 H 0.130 0.870 44 H 0.079 0.921 45 H 0.046 0.954 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.004 0.996 49 H 0.015 0.985 50 H 0.244 0.756 51 H 0.091 0.909 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 6.132 21.280 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.196 4.196 4 C -0.003 4.003 5 N -0.047 5.047 6 N -0.124 5.124 7 C -0.180 4.180 8 C -0.222 4.222 9 C -0.183 4.183 10 C 0.374 3.626 11 O -0.452 6.452 12 N -0.318 5.318 13 C -0.036 4.036 14 C -0.160 4.160 15 C 0.050 3.950 16 H 0.046 0.954 17 C -0.130 4.130 18 H 0.077 0.923 19 C -0.159 4.159 20 C 0.057 3.943 21 N -0.341 5.341 22 C -0.357 4.357 23 H 0.106 0.894 24 C -0.263 4.263 25 N -0.604 5.604 26 Si 0.801 3.199 27 H -0.217 1.217 28 H -0.226 1.226 29 H -0.189 1.189 30 C 0.015 3.985 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.135 0.865 39 H 0.122 0.878 40 H 0.235 0.765 41 H 0.214 0.786 42 H 0.114 0.886 43 H 0.147 0.853 44 H 0.098 0.902 45 H 0.065 0.935 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.022 0.978 49 H 0.033 0.967 50 H 0.053 0.947 51 H 0.109 0.891 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.625 7.552 21.746 23.698 hybrid contribution 0.072 -1.093 -1.977 2.260 sum -5.553 6.459 19.769 21.526 Atomic orbital electron populations 1.21789 0.93723 1.01447 1.02788 1.21393 0.97194 0.97776 0.96015 1.21718 1.01215 0.93169 1.03526 1.22413 1.02549 0.74215 1.01095 1.45877 1.15354 1.08847 1.34656 1.73192 1.07030 1.13018 1.19111 1.24213 1.01005 0.91457 1.01281 1.22952 0.96384 0.98798 1.04077 1.21430 0.98542 0.91655 1.06714 1.17212 0.84067 0.81563 0.79806 1.90735 1.52949 1.33128 1.68401 1.48033 1.22921 1.27766 1.33125 1.22863 0.96285 0.89034 0.95442 1.21796 0.97418 1.02134 0.94675 1.20923 0.95712 0.94201 0.84169 0.95417 1.22334 0.98048 0.98344 0.94229 0.92284 1.22531 0.96795 1.00986 0.95623 1.21301 0.87211 0.92998 0.92836 1.44516 1.27430 1.60569 1.01566 1.19423 1.03407 1.24310 0.88568 0.89369 1.25608 1.00283 1.02363 0.98044 1.70168 1.32217 1.49027 1.09019 0.85153 0.78064 0.78406 0.78227 1.21738 1.22551 1.18919 1.21503 0.84982 1.03662 0.88330 0.92059 0.94149 0.90901 0.93527 0.92573 0.91418 0.90356 0.86461 0.87850 0.76496 0.78574 0.88625 0.85288 0.90201 0.93472 0.89895 0.90534 0.97768 0.96681 0.94693 0.89102 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.07 71.98 0.65 -1.95 16 2 C -0.10 -2.09 3.12 -10.79 -0.03 -2.12 16 3 C -0.14 -2.18 9.19 71.98 0.66 -1.52 16 4 C 0.12 2.40 5.32 86.38 0.46 2.86 16 5 N -0.26 -6.11 2.94 -334.68 -0.98 -7.10 16 6 N -0.29 -6.48 11.24 -57.14 -0.64 -7.12 16 7 C 0.00 -0.07 12.03 85.18 1.02 0.95 16 8 C -0.19 -3.62 8.65 22.66 0.20 -3.43 16 9 C -0.06 -1.35 6.57 40.79 0.27 -1.08 16 10 C 0.59 16.35 7.56 86.58 0.65 17.00 16 11 O -0.57 -18.47 14.43 -4.12 -0.06 -18.53 16 12 N -0.59 -15.36 3.01 -823.01 -2.47 -17.83 16 13 C 0.09 1.92 5.14 86.68 0.45 2.37 16 14 C -0.12 -3.77 5.47 30.43 0.17 -3.60 16 15 C 0.16 5.88 2.58 45.51 0.12 6.00 16 16 H 0.03 1.04 7.95 -2.39 -0.02 1.02 16 17 C -0.11 -3.68 2.83 -10.22 -0.03 -3.71 16 18 H 0.06 2.25 8.12 -2.39 -0.02 2.23 16 19 C -0.12 -4.29 6.51 31.52 0.21 -4.09 16 20 C 0.18 8.88 5.44 86.84 0.47 9.35 16 21 N -0.62 -30.49 3.34 -669.92 -2.24 -32.73 16 22 C -0.23 -12.31 9.88 84.03 0.83 -11.48 16 23 H 0.09 4.46 7.24 -2.91 -0.02 4.43 16 24 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 25 N -0.95 -57.52 10.43 21.65 0.23 -57.29 16 26 Si 0.97 45.29 29.55 68.60 2.03 47.32 16 27 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 28 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 29 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 30 C 0.14 3.75 5.90 85.76 0.51 4.25 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.04 0.89 7.21 -2.39 -0.02 0.87 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.10 2.37 6.42 -2.39 -0.02 2.35 16 40 H 0.22 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.20 2.59 5.80 -2.91 -0.02 2.57 16 42 H 0.10 1.74 8.14 -2.38 -0.02 1.73 16 43 H 0.13 2.47 3.46 -2.39 -0.01 2.46 16 44 H 0.08 2.45 7.65 -2.38 -0.02 2.44 16 45 H 0.05 1.64 8.12 -2.39 -0.02 1.63 16 46 H 0.08 2.60 8.12 -2.38 -0.02 2.58 16 47 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 48 H 0.00 0.22 7.77 -2.39 -0.02 0.20 16 49 H 0.01 0.84 7.20 -2.39 -0.02 0.82 16 50 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 51 H 0.09 2.55 7.00 -2.39 -0.02 2.54 16 52 H 0.09 2.21 8.08 -2.39 -0.02 2.19 16 Total: -1.00 -71.32 396.78 3.82 -67.49 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.91 Total: 19.48 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 7.06 Total: 6.31 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -6.11 Total: -122.07 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.06 Total: -18.53 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -71.32 3.82 -67.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036729065.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.057 kcal (2) G-P(sol) polarization free energy of solvation -71.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds