Wall clock time and date at job start Wed Apr 1 2020 04:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46848 * 2 1 4 4 C 1.52995 * 109.47279 * 120.00074 * 2 1 3 5 5 N 1.46492 * 109.47444 * 174.81387 * 4 2 1 6 6 N 1.28444 * 125.19378 * 278.54157 * 5 4 2 7 7 C 1.30854 * 110.92992 * 180.02562 * 6 5 4 8 8 C 1.39672 * 107.86476 * 359.77122 * 7 6 5 9 9 C 1.36605 * 125.19033 * 98.56561 * 5 4 2 10 10 C 1.47156 * 126.88007 * 359.94276 * 9 5 4 11 11 O 1.21619 * 120.00835 * 331.70737 * 10 9 5 12 12 N 1.34788 * 119.99613 * 151.70984 * 10 9 5 13 13 C 1.46532 * 120.97629 * 351.27000 * 12 10 9 14 14 C 1.51784 * 110.13366 * 233.74815 * 13 12 10 15 15 C 1.49511 * 115.07542 * 318.40346 * 14 13 12 16 16 H 1.09002 * 105.92298 * 157.43525 * 15 14 13 17 17 C 1.52672 * 116.96550 * 40.04215 * 15 14 13 18 18 H 1.08996 * 112.50569 * 82.62211 * 17 15 14 19 19 C 1.56120 * 101.71247 * 202.83748 * 17 15 14 20 20 C 1.55096 * 101.12057 * 37.83118 * 19 17 15 21 21 N 1.46257 * 114.18310 * 272.08385 * 15 14 13 22 22 C 1.36935 * 125.95879 * 315.61342 * 21 15 14 23 23 H 1.07997 * 120.00342 * 359.97438 * 22 21 15 24 24 C 1.38814 * 119.99901 * 179.97438 * 22 21 15 25 25 N 1.31617 * 119.99922 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99801 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47377 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46792 * 120.00158 * 26 24 22 29 29 H 1.48506 * 109.46978 * 239.99845 * 26 24 22 30 30 C 1.46692 * 120.97509 * 171.24804 * 12 10 9 31 31 H 1.08998 * 109.47276 * 304.92418 * 1 2 3 32 32 H 1.09002 * 109.46906 * 64.92407 * 1 2 3 33 33 H 1.08996 * 109.46958 * 184.92318 * 1 2 3 34 34 H 1.09005 * 109.47138 * 240.00101 * 2 1 3 35 35 H 1.09004 * 109.46907 * 182.34642 * 3 2 1 36 36 H 1.09001 * 109.47241 * 302.34342 * 3 2 1 37 37 H 1.08996 * 109.46945 * 62.34808 * 3 2 1 38 38 H 1.09001 * 109.47079 * 54.81156 * 4 2 1 39 39 H 1.09002 * 109.47030 * 294.81989 * 4 2 1 40 40 H 1.08006 * 126.06909 * 180.02562 * 7 6 5 41 41 H 1.07997 * 127.32187 * 180.26651 * 8 7 6 42 42 H 1.08999 * 109.35962 * 353.94915 * 13 12 10 43 43 H 1.08997 * 109.35647 * 113.54675 * 13 12 10 44 44 H 1.08996 * 108.36280 * 79.85586 * 14 13 12 45 45 H 1.08997 * 108.36306 * 196.95389 * 14 13 12 46 46 H 1.09009 * 111.09890 * 155.79981 * 19 17 15 47 47 H 1.08996 * 111.10106 * 279.85156 * 19 17 15 48 48 H 1.09002 * 110.35182 * 81.81928 * 20 19 17 49 49 H 1.09000 * 110.35036 * 204.10116 * 20 19 17 50 50 H 0.97001 * 120.00146 * 179.97438 * 25 24 22 51 51 H 1.08999 * 109.53447 * 1.29766 * 30 12 10 52 52 H 1.09001 * 109.52825 * 241.08116 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4997 -0.8303 1.1884 6 7 4.1486 -1.7225 0.5306 7 6 5.4394 -1.5601 0.6711 8 6 5.6446 -0.4521 1.4963 9 6 4.3783 0.0011 1.8231 10 6 4.0452 1.1517 2.6779 11 8 3.0104 1.7645 2.4969 12 7 4.8871 1.5265 3.6616 13 6 6.0403 0.6981 4.0236 14 6 6.0222 0.3990 5.5116 15 6 5.6454 1.5523 6.3852 16 1 5.2845 1.1164 7.3168 17 6 4.5195 2.4569 5.8901 18 1 3.5317 2.0568 6.1187 19 6 4.8128 3.7806 6.6642 20 6 6.3632 3.8086 6.6319 21 7 6.7719 2.3961 6.7827 22 6 7.9925 1.9546 7.2191 23 1 8.1885 0.8952 7.2939 24 6 8.9779 2.8689 7.5655 25 7 8.7393 4.1600 7.4740 26 14 10.6427 2.2666 8.1616 27 1 10.6568 0.7817 8.1735 28 1 11.7043 2.7640 7.2501 29 1 10.8907 2.7755 9.5345 30 6 4.6759 2.7758 4.4008 31 1 -0.3634 0.5883 0.8426 32 1 -0.3633 0.4356 -0.9308 33 1 -0.3633 -1.0238 0.0882 34 1 1.8934 -0.5138 -0.8900 35 1 3.1292 1.4428 -0.0421 36 1 1.6427 1.9684 -0.8682 37 1 1.7114 1.9440 0.9103 38 1 1.6028 -1.7186 1.2968 39 1 1.7545 -0.1566 2.1368 40 1 6.2095 -2.1717 0.2245 41 1 6.5903 -0.0379 1.8133 42 1 6.0021 -0.2379 3.4664 43 1 6.9590 1.2284 3.7728 44 1 5.3164 -0.4121 5.6902 45 1 7.0143 0.0559 5.8049 46 1 4.3940 4.6412 6.1426 47 1 4.4425 3.7268 7.6879 48 1 6.7155 4.2053 5.6797 49 1 6.7488 4.4058 7.4583 50 1 9.4278 4.7989 7.7164 51 1 3.7735 3.2668 4.0365 52 1 5.5332 3.4335 4.2571 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036729066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:59 Heat of formation + Delta-G solvation = 78.337673 kcal Electronic energy + Delta-G solvation = -32412.484606 eV Core-core repulsion = 28414.753465 eV Total energy + Delta-G solvation = -3997.731141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.68185 -40.00743 -38.20281 -36.72898 -35.24490 -32.95754 -32.13208 -31.84182 -31.07473 -29.28181 -27.69069 -27.28694 -26.76936 -25.58265 -24.24448 -22.88114 -22.19328 -21.78170 -20.57043 -20.14294 -19.52629 -18.49904 -17.26382 -16.51558 -16.30917 -16.17048 -15.77440 -15.39555 -15.18614 -14.72443 -14.54382 -14.10001 -13.97941 -13.85640 -13.76890 -13.55627 -13.02218 -12.95536 -12.84976 -12.59027 -12.34830 -12.16506 -12.05632 -11.74400 -11.52328 -11.35848 -11.23313 -11.16673 -11.04730 -10.97773 -10.83272 -10.73831 -10.54875 -10.17683 -10.14959 -9.95751 -9.80509 -9.68438 -9.56689 -9.22250 -8.95205 -8.66945 -8.32742 -6.84492 -5.71669 -3.10472 1.30058 2.27265 2.56175 3.08658 3.21336 3.36091 3.41881 3.44254 4.32147 4.40771 4.44269 4.52556 4.76915 4.79114 5.08398 5.12221 5.16356 5.21379 5.25119 5.25593 5.38449 5.40727 5.48364 5.50323 5.52680 5.56326 5.67273 5.69587 5.74126 5.75895 5.83726 5.87424 5.89760 6.03312 6.06326 6.15349 6.25149 6.30963 6.37711 6.40743 6.42570 6.55433 6.64608 6.67157 6.70091 6.89545 6.94469 7.46158 7.52528 7.59668 7.81265 7.98742 8.18656 8.29364 9.16685 9.79126 10.45474 11.34498 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.002995 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.529733 B = 9347.075742 C =10356.664394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C -0.147 4.147 4 C 0.124 3.876 5 N -0.256 5.256 6 N -0.283 5.283 7 C -0.004 4.004 8 C -0.195 4.195 9 C -0.025 4.025 10 C 0.586 3.414 11 O -0.542 6.542 12 N -0.584 5.584 13 C 0.101 3.899 14 C -0.135 4.135 15 C 0.172 3.828 16 H 0.009 0.991 17 C -0.105 4.105 18 H 0.076 0.924 19 C -0.143 4.143 20 C 0.157 3.843 21 N -0.594 5.594 22 C -0.220 4.220 23 H 0.078 0.922 24 C -0.009 4.009 25 N -0.920 5.920 26 Si 0.911 3.089 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.123 3.877 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.185 0.815 41 H 0.165 0.835 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.014 0.986 49 H 0.098 0.902 50 H 0.251 0.749 51 H 0.086 0.914 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.341 -7.944 -12.606 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.204 4.204 4 C 0.004 3.996 5 N -0.043 5.043 6 N -0.115 5.115 7 C -0.180 4.180 8 C -0.224 4.224 9 C -0.154 4.154 10 C 0.373 3.627 11 O -0.421 6.421 12 N -0.315 5.315 13 C -0.022 4.022 14 C -0.174 4.174 15 C 0.064 3.936 16 H 0.027 0.973 17 C -0.125 4.125 18 H 0.095 0.905 19 C -0.182 4.182 20 C 0.032 3.968 21 N -0.319 5.319 22 C -0.349 4.349 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.741 3.259 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C 0.002 3.998 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.127 0.873 40 H 0.202 0.798 41 H 0.183 0.817 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.067 0.933 45 H 0.102 0.898 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.032 0.968 49 H 0.116 0.884 50 H 0.062 0.938 51 H 0.104 0.896 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.621 -8.203 -13.102 20.603 hybrid contribution 1.789 0.080 0.664 1.910 sum -11.832 -8.124 -12.438 18.992 Atomic orbital electron populations 1.21760 0.93729 1.01956 1.02654 1.21427 0.96477 0.97712 0.96811 1.21971 1.00913 0.94600 1.02891 1.22234 0.73137 1.02771 1.01479 1.45711 1.07362 1.18925 1.32289 1.73148 1.07546 1.14050 1.16736 1.23562 0.92391 0.99714 1.02379 1.22442 0.96847 0.99305 1.03795 1.21466 0.90625 0.98745 1.04528 1.16942 0.83392 0.82458 0.79914 1.90727 1.24249 1.56147 1.70961 1.47693 1.27223 1.23357 1.33234 1.21825 0.87989 0.95380 0.96976 1.21231 1.03092 0.99116 0.94008 1.19432 0.88681 0.90822 0.94677 0.97333 1.22292 0.98108 0.97923 0.94184 0.90528 1.23299 1.00795 0.95061 0.99045 1.21918 0.86958 0.86933 1.00989 1.44525 1.10971 1.01027 1.75354 1.19008 0.87897 0.92044 1.35915 0.90416 1.24758 0.98352 0.95372 1.01995 1.69852 1.32840 0.99790 1.54322 0.86060 0.83941 0.77717 0.78135 1.20543 1.21809 1.21807 1.21758 1.02859 0.84453 0.90743 0.91965 0.91954 0.92496 0.90732 0.93332 0.93390 0.89724 0.88807 0.87301 0.79811 0.81747 0.89064 0.90835 0.93293 0.89782 0.92023 0.91892 0.96776 0.88382 0.93789 0.89560 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.19 37.16 0.34 -0.75 16 2 C -0.10 -1.04 3.12 -90.62 -0.28 -1.32 16 3 C -0.15 -1.72 7.64 37.16 0.28 -1.43 16 4 C 0.12 1.33 5.39 -4.05 -0.02 1.31 16 5 N -0.26 -3.29 3.03 -57.15 -0.17 -3.47 16 6 N -0.28 -3.66 11.90 30.59 0.36 -3.30 16 7 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 8 C -0.20 -2.37 8.61 -38.98 -0.34 -2.71 16 9 C -0.02 -0.34 5.33 -82.06 -0.44 -0.78 16 10 C 0.59 8.82 7.36 -12.64 -0.09 8.73 16 11 O -0.54 -8.70 11.23 5.26 0.06 -8.64 16 12 N -0.58 -8.93 2.94 -175.54 -0.52 -9.44 16 13 C 0.10 1.49 5.27 -4.64 -0.02 1.47 16 14 C -0.13 -2.27 5.62 -29.07 -0.16 -2.43 16 15 C 0.17 3.33 2.61 -69.95 -0.18 3.15 16 16 H 0.01 0.19 8.08 -51.93 -0.42 -0.23 16 17 C -0.11 -1.79 3.69 -89.06 -0.33 -2.12 16 18 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 19 C -0.14 -2.57 6.46 -23.95 -0.15 -2.72 16 20 C 0.16 3.56 5.35 -2.21 -0.01 3.55 16 21 N -0.59 -13.98 3.32 -165.66 -0.55 -14.53 16 22 C -0.22 -5.71 9.59 -15.06 -0.14 -5.85 16 23 H 0.08 1.95 7.02 -52.49 -0.37 1.58 16 24 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 25 N -0.92 -25.75 10.18 55.49 0.56 -25.18 16 26 Si 0.91 21.25 29.55 -169.99 -5.02 16.23 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 C 0.12 1.99 5.54 -3.88 -0.02 1.97 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.67 6.88 -51.93 -0.36 0.31 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 1.11 6.05 -51.93 -0.31 0.80 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.11 1.25 6.64 -51.93 -0.34 0.91 16 40 H 0.18 1.49 8.06 -52.48 -0.42 1.07 16 41 H 0.17 1.78 6.61 -52.49 -0.35 1.44 16 42 H 0.09 1.19 4.38 -51.93 -0.23 0.96 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.52 6.64 -51.93 -0.34 1.18 16 46 H 0.06 0.98 7.98 -51.92 -0.41 0.56 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.01 0.34 7.10 -51.93 -0.37 -0.02 16 49 H 0.10 2.56 6.10 -51.93 -0.32 2.24 16 50 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 51 H 0.09 1.35 7.03 -51.93 -0.36 0.98 16 52 H 0.08 1.42 6.49 -51.93 -0.34 1.09 16 LS Contribution 386.58 15.07 5.83 5.83 Total: -1.00 -29.45 386.58 -9.64 -39.10 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -8.31 Total: 3.93 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.88 Total: -0.53 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.31 Total: -55.92 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.06 Total: -8.64 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.45 -9.64 -39.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036729066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.437 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds