Wall clock time and date at job start Wed Apr 1 2020 04:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46848 * 2 1 4 4 C 1.52995 * 109.47279 * 120.00074 * 2 1 3 5 5 N 1.46492 * 109.47444 * 174.81387 * 4 2 1 6 6 N 1.28444 * 125.19378 * 278.54157 * 5 4 2 7 7 C 1.30854 * 110.92992 * 180.02562 * 6 5 4 8 8 C 1.39672 * 107.86476 * 359.77122 * 7 6 5 9 9 C 1.36605 * 125.19033 * 98.56561 * 5 4 2 10 10 C 1.47156 * 126.88007 * 359.94276 * 9 5 4 11 11 O 1.21619 * 120.00835 * 331.70737 * 10 9 5 12 12 N 1.34788 * 119.99613 * 151.70984 * 10 9 5 13 13 C 1.46532 * 120.97629 * 351.27000 * 12 10 9 14 14 C 1.51784 * 110.13366 * 233.74815 * 13 12 10 15 15 C 1.49511 * 115.07542 * 318.40346 * 14 13 12 16 16 H 1.09002 * 105.92298 * 157.43525 * 15 14 13 17 17 C 1.52672 * 116.96550 * 40.04215 * 15 14 13 18 18 H 1.08996 * 112.50569 * 82.62211 * 17 15 14 19 19 C 1.56120 * 101.71247 * 202.83748 * 17 15 14 20 20 C 1.55096 * 101.12057 * 37.83118 * 19 17 15 21 21 N 1.46257 * 114.18310 * 272.08385 * 15 14 13 22 22 C 1.36935 * 125.95879 * 315.61342 * 21 15 14 23 23 H 1.07997 * 120.00342 * 359.97438 * 22 21 15 24 24 C 1.38814 * 119.99901 * 179.97438 * 22 21 15 25 25 N 1.31617 * 119.99922 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99801 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47377 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46792 * 120.00158 * 26 24 22 29 29 H 1.48506 * 109.46978 * 239.99845 * 26 24 22 30 30 C 1.46692 * 120.97509 * 171.24804 * 12 10 9 31 31 H 1.08998 * 109.47276 * 304.92418 * 1 2 3 32 32 H 1.09002 * 109.46906 * 64.92407 * 1 2 3 33 33 H 1.08996 * 109.46958 * 184.92318 * 1 2 3 34 34 H 1.09005 * 109.47138 * 240.00101 * 2 1 3 35 35 H 1.09004 * 109.46907 * 182.34642 * 3 2 1 36 36 H 1.09001 * 109.47241 * 302.34342 * 3 2 1 37 37 H 1.08996 * 109.46945 * 62.34808 * 3 2 1 38 38 H 1.09001 * 109.47079 * 54.81156 * 4 2 1 39 39 H 1.09002 * 109.47030 * 294.81989 * 4 2 1 40 40 H 1.08006 * 126.06909 * 180.02562 * 7 6 5 41 41 H 1.07997 * 127.32187 * 180.26651 * 8 7 6 42 42 H 1.08999 * 109.35962 * 353.94915 * 13 12 10 43 43 H 1.08997 * 109.35647 * 113.54675 * 13 12 10 44 44 H 1.08996 * 108.36280 * 79.85586 * 14 13 12 45 45 H 1.08997 * 108.36306 * 196.95389 * 14 13 12 46 46 H 1.09009 * 111.09890 * 155.79981 * 19 17 15 47 47 H 1.08996 * 111.10106 * 279.85156 * 19 17 15 48 48 H 1.09002 * 110.35182 * 81.81928 * 20 19 17 49 49 H 1.09000 * 110.35036 * 204.10116 * 20 19 17 50 50 H 0.97001 * 120.00146 * 179.97438 * 25 24 22 51 51 H 1.08999 * 109.53447 * 1.29766 * 30 12 10 52 52 H 1.09001 * 109.52825 * 241.08116 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4997 -0.8303 1.1884 6 7 4.1486 -1.7225 0.5306 7 6 5.4394 -1.5601 0.6711 8 6 5.6446 -0.4521 1.4963 9 6 4.3783 0.0011 1.8231 10 6 4.0452 1.1517 2.6779 11 8 3.0104 1.7645 2.4969 12 7 4.8871 1.5265 3.6616 13 6 6.0403 0.6981 4.0236 14 6 6.0222 0.3990 5.5116 15 6 5.6454 1.5523 6.3852 16 1 5.2845 1.1164 7.3168 17 6 4.5195 2.4569 5.8901 18 1 3.5317 2.0568 6.1187 19 6 4.8128 3.7806 6.6642 20 6 6.3632 3.8086 6.6319 21 7 6.7719 2.3961 6.7827 22 6 7.9925 1.9546 7.2191 23 1 8.1885 0.8952 7.2939 24 6 8.9779 2.8689 7.5655 25 7 8.7393 4.1600 7.4740 26 14 10.6427 2.2666 8.1616 27 1 10.6568 0.7817 8.1735 28 1 11.7043 2.7640 7.2501 29 1 10.8907 2.7755 9.5345 30 6 4.6759 2.7758 4.4008 31 1 -0.3634 0.5883 0.8426 32 1 -0.3633 0.4356 -0.9308 33 1 -0.3633 -1.0238 0.0882 34 1 1.8934 -0.5138 -0.8900 35 1 3.1292 1.4428 -0.0421 36 1 1.6427 1.9684 -0.8682 37 1 1.7114 1.9440 0.9103 38 1 1.6028 -1.7186 1.2968 39 1 1.7545 -0.1566 2.1368 40 1 6.2095 -2.1717 0.2245 41 1 6.5903 -0.0379 1.8133 42 1 6.0021 -0.2379 3.4664 43 1 6.9590 1.2284 3.7728 44 1 5.3164 -0.4121 5.6902 45 1 7.0143 0.0559 5.8049 46 1 4.3940 4.6412 6.1426 47 1 4.4425 3.7268 7.6879 48 1 6.7155 4.2053 5.6797 49 1 6.7488 4.4058 7.4583 50 1 9.4278 4.7989 7.7164 51 1 3.7735 3.2668 4.0365 52 1 5.5332 3.4335 4.2571 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036729066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:58 Heat of formation + Delta-G solvation = 62.709921 kcal Electronic energy + Delta-G solvation = -32413.162277 eV Core-core repulsion = 28414.753465 eV Total energy + Delta-G solvation = -3998.408812 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.63192 -41.33445 -39.59033 -37.60779 -36.59299 -34.68291 -33.36530 -33.02095 -32.21472 -30.94053 -29.19714 -28.10599 -27.63461 -27.00505 -25.93991 -24.22070 -23.38484 -22.73167 -21.89845 -21.45652 -20.62659 -19.84269 -18.71887 -17.90908 -17.64220 -17.25484 -17.02098 -16.64722 -16.30437 -16.10307 -15.83826 -15.63713 -15.36235 -14.84261 -14.74533 -14.61713 -14.39021 -14.16563 -13.99935 -13.84296 -13.79678 -13.27510 -13.10191 -13.04100 -12.93916 -12.81513 -12.72726 -12.48701 -12.23785 -12.15463 -11.96535 -11.91764 -11.81963 -11.76993 -11.60110 -11.57778 -11.36371 -11.27448 -10.95477 -10.66603 -10.18873 -9.91258 -9.61736 -8.77581 -7.73805 -5.13504 0.26617 1.30959 1.49274 1.50212 1.59430 1.64644 1.99887 2.07549 2.52730 3.29777 3.38130 3.48778 3.64743 3.73632 3.79273 3.84476 3.95831 4.01635 4.03544 4.17204 4.19132 4.25526 4.38817 4.41118 4.45549 4.53863 4.59401 4.63040 4.66687 4.74016 4.78093 4.79492 4.85281 4.90178 4.91013 4.97078 5.00797 5.10068 5.12142 5.16276 5.29716 5.33075 5.40196 5.42866 5.51082 5.55249 5.60733 5.69827 5.77389 5.87305 6.31758 6.34435 6.95572 7.10264 7.16282 7.85235 8.51095 9.31053 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.002995 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.529733 B = 9347.075742 C =10356.664394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 C -0.139 4.139 4 C 0.119 3.881 5 N -0.258 5.258 6 N -0.295 5.295 7 C -0.001 4.001 8 C -0.195 4.195 9 C -0.045 4.045 10 C 0.588 3.412 11 O -0.553 6.553 12 N -0.586 5.586 13 C 0.110 3.890 14 C -0.130 4.130 15 C 0.168 3.832 16 H -0.005 1.005 17 C -0.094 4.094 18 H 0.097 0.903 19 C -0.129 4.129 20 C 0.161 3.839 21 N -0.610 5.610 22 C -0.221 4.221 23 H 0.084 0.916 24 C -0.067 4.067 25 N -0.949 5.949 26 Si 0.971 3.029 27 H -0.265 1.265 28 H -0.296 1.296 29 H -0.298 1.298 30 C 0.132 3.868 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.023 0.977 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.216 0.784 41 H 0.176 0.824 42 H 0.115 0.885 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.065 0.935 48 H -0.007 1.007 49 H 0.061 0.939 50 H 0.244 0.756 51 H 0.095 0.905 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.550 -10.051 -13.895 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 C -0.196 4.196 4 C -0.001 4.001 5 N -0.046 5.046 6 N -0.127 5.127 7 C -0.177 4.177 8 C -0.223 4.223 9 C -0.174 4.174 10 C 0.376 3.624 11 O -0.432 6.432 12 N -0.317 5.317 13 C -0.012 4.012 14 C -0.170 4.170 15 C 0.061 3.939 16 H 0.013 0.987 17 C -0.114 4.114 18 H 0.115 0.885 19 C -0.168 4.168 20 C 0.036 3.964 21 N -0.336 5.336 22 C -0.350 4.350 23 H 0.101 0.899 24 C -0.259 4.259 25 N -0.600 5.600 26 Si 0.801 3.199 27 H -0.189 1.189 28 H -0.223 1.223 29 H -0.225 1.225 30 C 0.009 3.991 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.118 0.882 40 H 0.233 0.767 41 H 0.193 0.807 42 H 0.133 0.867 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.083 0.917 48 H 0.011 0.989 49 H 0.079 0.921 50 H 0.054 0.946 51 H 0.113 0.887 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.864 -10.347 -14.404 23.141 hybrid contribution 2.121 0.711 1.031 2.463 sum -12.743 -9.636 -13.374 20.835 Atomic orbital electron populations 1.21734 0.91788 1.03061 1.03017 1.21378 0.97978 0.96123 0.96248 1.21870 0.99233 0.96025 1.02501 1.22398 0.72443 1.03809 1.01423 1.45902 1.07930 1.18682 1.32048 1.73155 1.08329 1.14260 1.16957 1.24110 0.92512 0.99462 1.01595 1.22665 0.96733 0.99342 1.03607 1.21385 0.91603 0.98993 1.05378 1.17104 0.82970 0.82669 0.79652 1.90727 1.24749 1.56621 1.71148 1.47642 1.27483 1.23100 1.33506 1.21756 0.87394 0.96204 0.95840 1.21126 1.02726 0.98344 0.94794 1.19643 0.87975 0.91383 0.94871 0.98684 1.22250 0.98054 0.96573 0.94475 0.88454 1.23155 0.96960 0.96837 0.99868 1.21671 0.90186 0.86267 0.98243 1.44756 1.11269 1.02056 1.75481 1.19344 0.88767 0.92322 1.34546 0.89851 1.25505 1.01583 0.95622 1.03214 1.70090 1.33298 1.00666 1.55898 0.85105 0.80050 0.77946 0.76841 1.18933 1.22321 1.22523 1.21569 1.02402 0.84784 0.90297 0.92134 0.91179 0.90931 0.91085 0.95773 0.92434 0.91230 0.86946 0.88164 0.76725 0.80677 0.86707 0.92091 0.91354 0.91150 0.89567 0.91664 0.98936 0.92114 0.94649 0.88694 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.19 71.98 0.66 -1.14 16 2 C -0.10 -1.78 3.12 -10.79 -0.03 -1.81 16 3 C -0.14 -3.14 7.64 71.98 0.55 -2.59 16 4 C 0.12 2.35 5.39 86.38 0.47 2.82 16 5 N -0.26 -6.18 3.03 -334.71 -1.01 -7.19 16 6 N -0.29 -6.94 11.90 -57.14 -0.68 -7.62 16 7 C 0.00 -0.03 12.03 85.19 1.02 1.00 16 8 C -0.19 -4.30 8.61 22.66 0.20 -4.11 16 9 C -0.04 -1.16 5.33 40.78 0.22 -0.94 16 10 C 0.59 16.94 7.36 86.58 0.64 17.58 16 11 O -0.55 -17.19 11.23 -4.09 -0.05 -17.23 16 12 N -0.59 -17.18 2.94 -827.54 -2.44 -19.62 16 13 C 0.11 3.13 5.27 85.97 0.45 3.58 16 14 C -0.13 -4.22 5.62 29.08 0.16 -4.06 16 15 C 0.17 6.42 2.61 43.81 0.11 6.53 16 16 H 0.00 -0.19 8.08 -2.39 -0.02 -0.21 16 17 C -0.09 -3.06 3.69 -9.78 -0.04 -3.10 16 18 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 19 C -0.13 -4.57 6.46 32.40 0.21 -4.36 16 20 C 0.16 7.55 5.35 86.84 0.46 8.02 16 21 N -0.61 -29.20 3.32 -678.02 -2.25 -31.44 16 22 C -0.22 -11.57 9.59 84.03 0.81 -10.77 16 23 H 0.08 4.18 7.02 -2.91 -0.02 4.15 16 24 C -0.07 -3.64 5.49 84.86 0.47 -3.18 16 25 N -0.95 -55.10 10.18 21.65 0.22 -54.88 16 26 Si 0.97 44.39 29.55 68.60 2.03 46.41 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 28 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 29 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 30 C 0.13 4.12 5.54 86.38 0.48 4.60 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.02 0.64 6.88 -2.39 -0.02 0.63 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.79 6.05 -2.39 -0.01 1.77 16 38 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.10 2.17 6.64 -2.39 -0.02 2.15 16 40 H 0.22 2.72 8.06 -2.91 -0.02 2.69 16 41 H 0.18 3.41 6.61 -2.91 -0.02 3.39 16 42 H 0.12 2.73 4.38 -2.39 -0.01 2.72 16 43 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.07 2.49 6.64 -2.39 -0.02 2.47 16 46 H 0.09 2.62 7.98 -2.38 -0.02 2.61 16 47 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 48 H -0.01 -0.37 7.10 -2.39 -0.02 -0.38 16 49 H 0.06 3.32 6.10 -2.39 -0.01 3.30 16 50 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 51 H 0.09 2.83 7.03 -2.39 -0.02 2.81 16 52 H 0.06 2.20 6.49 -2.39 -0.02 2.18 16 Total: -1.00 -64.92 386.58 3.58 -61.35 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.92 Total: 22.18 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 6.84 Total: 8.06 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -6.16 Total: -120.76 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.05 Total: -17.23 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.92 3.58 -61.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036729066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.055 kcal (2) G-P(sol) polarization free energy of solvation -64.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds