Wall clock time and date at job start Wed Apr 1 2020 04:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.46908 * 2 1 4 4 C 1.53006 * 109.47203 * 240.00833 * 2 1 3 5 5 N 1.46499 * 109.47433 * 120.00346 * 2 1 3 6 6 C 1.34258 * 125.75211 * 75.30096 * 5 2 1 7 7 C 1.38050 * 107.41276 * 180.13650 * 6 5 2 8 8 C 1.47427 * 126.40919 * 179.89744 * 7 6 5 9 9 O 1.21602 * 120.00192 * 329.97674 * 8 7 6 10 10 N 1.34778 * 119.99623 * 150.25868 * 8 7 6 11 11 C 1.47074 * 120.93011 * 173.21310 * 10 8 7 12 12 C 1.53099 * 107.54182 * 121.16944 * 11 10 8 13 13 C 1.50292 * 112.37655 * 52.60621 * 12 11 10 14 14 H 1.08999 * 105.74270 * 196.36265 * 13 12 11 15 15 C 1.52105 * 116.67005 * 314.15743 * 13 12 11 16 16 H 1.09005 * 111.19590 * 272.30365 * 15 13 12 17 17 C 1.55999 * 102.19177 * 153.96857 * 15 13 12 18 18 C 1.55076 * 101.16774 * 323.00618 * 17 15 13 19 19 N 1.46508 * 113.03160 * 80.79268 * 13 12 11 20 20 C 1.36947 * 125.97014 * 47.07733 * 19 13 12 21 21 H 1.07994 * 119.99980 * 359.95292 * 20 19 13 22 22 C 1.38815 * 119.99732 * 179.97438 * 20 19 13 23 23 N 1.31610 * 120.00044 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99662 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47224 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46867 * 119.99808 * 24 22 20 27 27 H 1.48495 * 109.47159 * 240.00362 * 24 22 20 28 28 C 1.46119 * 120.93633 * 353.49477 * 10 8 7 29 29 C 1.41286 * 107.17091 * 359.63249 * 7 6 5 30 30 N 1.30449 * 108.02212 * 0.22604 * 29 7 6 31 31 H 1.09001 * 109.47702 * 299.99579 * 1 2 3 32 32 H 1.08998 * 109.47608 * 59.99989 * 1 2 3 33 33 H 1.09005 * 109.46996 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46716 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46995 * 300.00387 * 3 2 1 36 36 H 1.09000 * 109.46749 * 60.00515 * 3 2 1 37 37 H 1.09005 * 109.46449 * 299.99247 * 4 2 1 38 38 H 1.08998 * 109.47509 * 59.99118 * 4 2 1 39 39 H 1.08998 * 109.47023 * 180.02562 * 4 2 1 40 40 H 1.07997 * 126.29123 * 359.97438 * 6 5 2 41 41 H 1.09000 * 109.79441 * 240.75976 * 11 10 8 42 42 H 1.08996 * 109.79824 * 1.61103 * 11 10 8 43 43 H 1.08998 * 109.01108 * 291.79553 * 12 11 10 44 44 H 1.08996 * 108.74228 * 173.23372 * 12 11 10 45 45 H 1.08999 * 111.08266 * 80.97424 * 17 15 13 46 46 H 1.08998 * 111.08387 * 205.03668 * 17 15 13 47 47 H 1.08996 * 110.35814 * 155.66928 * 18 17 15 48 48 H 1.08993 * 110.35960 * 277.87451 * 18 17 15 49 49 H 0.97007 * 120.00197 * 179.97438 * 23 22 20 50 50 H 1.09002 * 109.03266 * 352.99070 * 28 10 8 51 51 H 1.09000 * 109.04034 * 111.86366 * 28 10 8 52 52 H 1.07997 * 125.98808 * 180.24673 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 2.0183 -0.6907 1.1961 6 6 2.0192 -2.0193 1.3894 7 6 2.5571 -2.2546 2.6388 8 6 2.7519 -3.5708 3.2738 9 8 1.9988 -4.4892 3.0130 10 7 3.7614 -3.7544 4.1477 11 6 3.8875 -5.0095 4.9041 12 6 5.2517 -5.6168 4.5661 13 6 6.3776 -4.6417 4.7667 14 1 7.2298 -5.0597 4.2308 15 6 6.1736 -3.2398 4.2130 16 1 6.4919 -3.1769 3.1723 17 6 7.1014 -2.3849 5.1305 18 6 6.9083 -3.0933 6.4964 19 7 6.7957 -4.5289 6.1663 20 6 7.0398 -5.5720 7.0195 21 1 6.9266 -6.5892 6.6749 22 6 7.4324 -5.3217 8.3272 23 7 7.5704 -4.0820 8.7470 24 14 7.7647 -6.7445 9.4911 25 1 7.5400 -8.0287 8.7799 26 1 9.1714 -6.6800 9.9627 27 1 6.8475 -6.6561 10.6556 28 6 4.7577 -2.7100 4.3749 29 6 2.8916 -0.9985 3.1923 30 7 2.5675 -0.0772 2.3275 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1299 1.4425 0.0005 35 1 1.6765 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 1.6767 -1.7488 -1.2494 38 1 1.6765 -0.2073 -2.1393 39 1 3.1299 -0.7215 -1.2491 40 1 1.6621 -2.7663 0.6960 41 1 3.8267 -4.8041 5.9728 42 1 3.0931 -5.6969 4.6138 43 1 5.2476 -5.9420 3.5258 44 1 5.4173 -6.4836 5.2057 45 1 8.1391 -2.4430 4.8020 46 1 6.7632 -1.3497 5.1746 47 1 7.7710 -2.9187 7.1394 48 1 5.9976 -2.7414 6.9808 49 1 7.8443 -3.9071 9.6610 50 1 4.5960 -1.9030 3.6602 51 1 4.6380 -2.3181 5.3850 52 1 3.3377 -0.8305 4.1614 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036756508.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:10 Heat of formation + Delta-G solvation = 78.562171 kcal Electronic energy + Delta-G solvation = -31849.710317 eV Core-core repulsion = 27851.988911 eV Total energy + Delta-G solvation = -3997.721407 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.68495 -39.80279 -38.06507 -37.02257 -34.92767 -32.69717 -32.17805 -30.95471 -30.19522 -29.19152 -27.94043 -27.81410 -27.59156 -25.38150 -23.99495 -23.62565 -22.23612 -21.61778 -20.12728 -19.83210 -19.44059 -18.24296 -17.14318 -16.51046 -16.22195 -15.78936 -15.64500 -15.23902 -14.80704 -14.67310 -14.42007 -14.26443 -13.88550 -13.84243 -13.68502 -13.16076 -12.90664 -12.78376 -12.74845 -12.71798 -12.57781 -12.31029 -12.24522 -12.08608 -11.68727 -11.66403 -11.59694 -11.22722 -11.14578 -11.02322 -10.96708 -10.74087 -10.48213 -10.16103 -10.02675 -9.85984 -9.75610 -9.62969 -9.50933 -9.39538 -8.72281 -8.62308 -8.11957 -6.78838 -5.65735 -3.04424 1.53542 2.10456 2.19632 3.29285 3.40690 3.46831 3.48651 3.56423 3.98859 4.25586 4.36211 4.49579 4.56583 4.64774 4.95205 4.98188 5.02360 5.15083 5.15966 5.21419 5.28258 5.31225 5.32925 5.37107 5.38716 5.47688 5.51242 5.57992 5.61202 5.67898 5.71328 5.81281 5.82500 5.95002 6.06182 6.11725 6.16950 6.34629 6.40223 6.42765 6.57570 6.58962 6.71171 6.73905 6.86269 6.98155 7.05762 7.47718 7.51247 7.65883 7.83029 7.86498 8.35609 8.51060 9.23081 9.85108 10.51437 11.40113 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023465 B = 0.002565 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.965733 B =10911.544050 C =11462.217725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.177 3.823 3 C -0.143 4.143 4 C -0.162 4.162 5 N -0.353 5.353 6 C 0.119 3.881 7 C -0.283 4.283 8 C 0.593 3.407 9 O -0.559 6.559 10 N -0.597 5.597 11 C 0.122 3.878 12 C -0.134 4.134 13 C 0.172 3.828 14 H 0.011 0.989 15 C -0.104 4.104 16 H 0.070 0.930 17 C -0.142 4.142 18 C 0.156 3.844 19 N -0.593 5.593 20 C -0.217 4.217 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.291 1.291 28 C 0.110 3.890 29 C 0.076 3.924 30 N -0.294 5.294 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.180 0.820 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.100 0.900 48 H 0.013 0.987 49 H 0.251 0.749 50 H 0.085 0.915 51 H 0.071 0.929 52 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.156 10.710 -19.188 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.095 3.905 3 C -0.201 4.201 4 C -0.220 4.220 5 N -0.133 5.133 6 C -0.032 4.032 7 C -0.298 4.298 8 C 0.382 3.618 9 O -0.439 6.439 10 N -0.328 5.328 11 C 0.001 3.999 12 C -0.174 4.174 13 C 0.065 3.935 14 H 0.028 0.972 15 C -0.124 4.124 16 H 0.089 0.911 17 C -0.181 4.181 18 C 0.031 3.969 19 N -0.318 5.318 20 C -0.345 4.345 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.570 5.570 24 Si 0.742 3.258 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.218 1.218 28 C -0.013 4.013 29 C -0.111 4.111 30 N -0.114 5.114 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.197 0.803 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.117 0.883 48 H 0.031 0.969 49 H 0.061 0.939 50 H 0.103 0.897 51 H 0.089 0.911 52 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -11.544 11.520 -19.463 25.392 hybrid contribution 0.277 -1.666 0.908 1.917 sum -11.267 9.854 -18.554 23.839 Atomic orbital electron populations 1.22280 0.92697 1.03365 1.03541 1.20827 0.94556 0.93951 0.81177 1.21914 1.02364 0.92634 1.03177 1.22284 1.02609 1.01163 0.95991 1.48777 1.46351 1.04084 1.14120 1.22729 0.96859 0.86450 0.97139 1.20277 1.17043 0.94518 0.97926 1.17266 0.80165 0.86137 0.78203 1.90724 1.46378 1.43477 1.63316 1.47734 1.25968 1.17849 1.41199 1.21582 0.97903 0.84679 0.95755 1.21658 0.95038 1.00334 1.00413 1.19543 0.94152 0.91976 0.87850 0.97185 1.21877 0.94567 0.96944 0.98974 0.91127 1.23306 0.98304 0.97678 0.98840 1.21909 1.01374 0.82361 0.91270 1.44549 1.78001 1.02507 1.06757 1.19035 1.38065 0.86425 0.90996 0.90434 1.24743 1.02237 0.96497 0.97116 1.69836 1.53949 1.16751 1.16435 0.86054 0.77509 0.81268 0.81018 1.20568 1.21868 1.21844 1.21728 0.87657 0.89989 1.01934 1.24297 0.97667 0.89562 0.99535 1.77145 1.18076 1.21845 0.94286 0.91416 0.90226 0.91618 0.91441 0.90894 0.90836 0.91412 0.89872 0.91249 0.80277 0.90621 0.89851 0.93142 0.90323 0.91944 0.92085 0.88252 0.96913 0.93867 0.89733 0.91079 0.78940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 8.72 37.15 0.32 -0.64 16 2 C 0.18 1.27 1.23 -131.82 -0.16 1.11 16 3 C -0.14 -0.95 8.07 37.16 0.30 -0.65 16 4 C -0.16 -0.88 8.28 37.16 0.31 -0.57 16 5 N -0.35 -3.70 3.41 -48.11 -0.16 -3.86 16 6 C 0.12 1.37 10.51 -16.56 -0.17 1.20 16 7 C -0.28 -3.91 5.52 -105.07 -0.58 -4.49 16 8 C 0.59 9.91 7.62 -12.52 -0.10 9.81 16 9 O -0.56 -10.86 16.48 5.28 0.09 -10.78 16 10 N -0.60 -9.93 2.93 -175.32 -0.51 -10.44 16 11 C 0.12 2.21 6.54 -3.68 -0.02 2.19 16 12 C -0.13 -2.52 5.62 -28.03 -0.16 -2.68 16 13 C 0.17 3.48 2.70 -69.73 -0.19 3.30 16 14 H 0.01 0.22 8.09 -51.93 -0.42 -0.20 16 15 C -0.10 -1.76 3.45 -89.96 -0.31 -2.07 16 16 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 17 C -0.14 -2.53 6.38 -24.03 -0.15 -2.68 16 18 C 0.16 3.57 5.50 -2.27 -0.01 3.56 16 19 N -0.59 -14.35 3.29 -165.45 -0.54 -14.89 16 20 C -0.22 -5.79 9.62 -15.05 -0.14 -5.93 16 21 H 0.08 2.02 7.09 -52.49 -0.37 1.65 16 22 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 23 N -0.92 -26.21 10.16 55.49 0.56 -25.64 16 24 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 C 0.11 1.69 4.40 -4.73 -0.02 1.67 16 29 C 0.08 0.97 9.60 -16.98 -0.16 0.80 16 30 N -0.29 -3.64 11.56 30.86 0.36 -3.29 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.58 8.03 -51.93 -0.42 0.16 16 37 H 0.07 0.35 7.33 -51.93 -0.38 -0.03 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.18 1.71 7.52 -52.49 -0.39 1.31 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.08 1.50 7.04 -51.93 -0.37 1.13 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 1.57 6.82 -51.93 -0.35 1.21 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.06 0.93 7.94 -51.93 -0.41 0.51 16 47 H 0.10 2.61 6.04 -51.93 -0.31 2.30 16 48 H 0.01 0.31 7.44 -51.93 -0.39 -0.07 16 49 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 50 H 0.08 1.12 4.22 -51.93 -0.22 0.90 16 51 H 0.07 1.15 6.81 -51.93 -0.35 0.79 16 52 H 0.19 2.18 6.51 -52.49 -0.34 1.83 16 LS Contribution 396.72 15.07 5.98 5.98 Total: -1.00 -32.11 396.72 -9.13 -41.24 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.52 Total: 1.33 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -1.35 Total: 3.54 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.30 Total: -58.13 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.11 -9.13 -41.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036756508.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.803 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds