Wall clock time and date at job start Wed Apr 1 2020 04:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47444 * 2 1 4 4 C 1.53001 * 109.46950 * 120.00093 * 2 1 3 5 5 N 1.46493 * 109.47045 * 239.99421 * 2 1 3 6 6 C 1.34265 * 125.75245 * 74.72236 * 5 2 1 7 7 C 1.38037 * 107.42031 * 179.84396 * 6 5 2 8 8 C 1.47425 * 126.41720 * 180.16009 * 7 6 5 9 9 O 1.21605 * 119.99911 * 318.13084 * 8 7 6 10 10 N 1.34774 * 120.00320 * 138.13457 * 8 7 6 11 11 C 1.46596 * 119.68399 * 3.34509 * 10 8 7 12 12 C 1.53542 * 110.81940 * 227.73539 * 11 10 8 13 13 C 1.51526 * 107.42104 * 309.22011 * 12 11 10 14 14 H 1.09003 * 108.81268 * 306.40451 * 13 12 11 15 15 C 1.55359 * 107.78545 * 64.70598 * 13 12 11 16 16 H 1.09001 * 112.26824 * 50.84198 * 15 13 12 17 17 C 1.53739 * 100.22410 * 169.05652 * 15 13 12 18 18 C 1.55282 * 101.84509 * 320.91313 * 17 15 13 19 19 N 1.45470 * 117.33950 * 181.74701 * 13 12 11 20 20 C 1.36934 * 126.40318 * 30.64796 * 19 13 12 21 21 H 1.07998 * 120.00633 * 359.97438 * 20 19 13 22 22 C 1.38815 * 119.99778 * 179.97438 * 20 19 13 23 23 N 1.31623 * 120.00049 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00063 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46797 * 59.99818 * 24 22 20 26 26 H 1.48502 * 109.47154 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46901 * 299.99846 * 24 22 20 28 28 C 1.47722 * 119.68806 * 183.61747 * 10 8 7 29 29 C 1.41295 * 107.17105 * 0.41550 * 7 6 5 30 30 N 1.30448 * 108.02061 * 359.74139 * 29 7 6 31 31 H 1.08999 * 109.46932 * 59.99966 * 1 2 3 32 32 H 1.09002 * 109.47038 * 300.00230 * 1 2 3 33 33 H 1.08990 * 109.47545 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47191 * 59.99864 * 3 2 1 35 35 H 1.08999 * 109.47145 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47084 * 299.99941 * 3 2 1 37 37 H 1.09000 * 109.47491 * 59.99377 * 4 2 1 38 38 H 1.08999 * 109.47301 * 179.97438 * 4 2 1 39 39 H 1.09002 * 109.46987 * 299.99708 * 4 2 1 40 40 H 1.07998 * 126.28904 * 359.97438 * 6 5 2 41 41 H 1.09007 * 109.25556 * 348.10277 * 11 10 8 42 42 H 1.09006 * 109.25914 * 107.53750 * 11 10 8 43 43 H 1.08995 * 109.96523 * 189.66795 * 12 11 10 44 44 H 1.08994 * 109.78420 * 68.66634 * 12 11 10 45 45 H 1.09005 * 110.95211 * 79.05412 * 17 15 13 46 46 H 1.09004 * 110.95570 * 202.77327 * 17 15 13 47 47 H 1.09002 * 109.91948 * 141.82865 * 18 17 15 48 48 H 1.09001 * 109.92111 * 263.12793 * 18 17 15 49 49 H 0.96995 * 120.00062 * 179.97438 * 23 22 20 50 50 H 1.09003 * 110.07296 * 247.15230 * 28 10 8 51 51 H 1.09000 * 110.06608 * 8.73522 * 28 10 8 52 52 H 1.07996 * 125.99270 * 179.78304 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 2.0183 -0.6907 -1.1960 6 6 2.0091 -0.1982 -2.4451 7 6 2.5569 -1.1582 -3.2719 8 6 2.7511 -1.0506 -4.7293 9 8 1.8817 -0.5601 -5.4239 10 7 3.8919 -1.4960 -5.2920 11 6 4.9039 -2.1527 -4.4591 12 6 6.2994 -1.5776 -4.7408 13 6 6.5090 -1.6098 -6.2411 14 1 6.3271 -2.6229 -6.5998 15 6 5.4747 -0.6463 -6.8856 16 1 5.4827 0.3395 -6.4205 17 6 6.0139 -0.5896 -8.3242 18 6 7.5486 -0.5651 -8.0886 19 7 7.7912 -1.1444 -6.7467 20 6 8.9969 -1.2265 -6.1028 21 1 9.0554 -1.6716 -5.1205 22 6 10.1441 -0.7376 -6.7126 23 7 10.0730 -0.1957 -7.9100 24 14 11.7889 -0.8489 -5.8340 25 1 12.1077 -2.2730 -5.5589 26 1 12.8491 -0.2615 -6.6919 27 1 11.7172 -0.1013 -4.5529 28 6 4.1133 -1.3123 -6.7409 29 6 2.8914 -2.2657 -2.4607 30 7 2.5675 -1.9773 -1.2305 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 -1.0275 0.0005 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6765 -1.7489 1.2493 38 1 3.1299 -0.7217 1.2491 39 1 1.6766 -0.2074 2.1392 40 1 1.6425 0.7718 -2.7470 41 1 4.6587 -2.0000 -3.4080 42 1 4.9090 -3.2211 -4.6749 43 1 7.0585 -2.1843 -4.2473 44 1 6.3546 -0.5502 -4.3808 45 1 5.7198 -1.4762 -8.8859 46 1 5.6825 0.3177 -8.8293 47 1 8.0505 -1.1644 -8.8482 48 1 7.9130 0.4617 -8.1212 49 1 10.8745 0.1462 -8.3360 50 1 4.1144 -2.2789 -7.2447 51 1 3.3371 -0.6718 -7.1596 52 1 3.3377 -3.1889 -2.7997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036756510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:20 Heat of formation + Delta-G solvation = 75.869876 kcal Electronic energy + Delta-G solvation = -31511.123168 eV Core-core repulsion = 27513.285015 eV Total energy + Delta-G solvation = -3997.838153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.72365 -39.87276 -38.07426 -37.03563 -35.28112 -32.72369 -31.51182 -31.06157 -30.64140 -29.28707 -28.03026 -27.93805 -27.72716 -24.99198 -24.03061 -23.07643 -22.19441 -21.63679 -20.06250 -19.86496 -19.62370 -18.86157 -17.31937 -16.62483 -16.09586 -15.77167 -15.58276 -15.09096 -14.94754 -14.81588 -14.44895 -14.28514 -13.97546 -13.80458 -13.68103 -13.17701 -12.95909 -12.87594 -12.78541 -12.74807 -12.60790 -12.39991 -12.31022 -12.24900 -11.69263 -11.66970 -11.58850 -11.41881 -11.35415 -11.00568 -10.79435 -10.76269 -10.65012 -10.15209 -10.06181 -9.85917 -9.69552 -9.62162 -9.55897 -9.41699 -8.73742 -8.60232 -8.37149 -6.81211 -5.69591 -3.02493 1.52722 2.07290 2.17582 3.05806 3.40475 3.41703 3.45304 3.46431 3.97083 4.25019 4.35501 4.50641 4.53821 4.58007 4.86815 4.97131 5.00068 5.13039 5.15871 5.17384 5.21659 5.28234 5.30715 5.32626 5.35970 5.41467 5.49345 5.55085 5.61894 5.66236 5.67385 5.69485 5.79685 5.87156 5.95509 6.09691 6.20933 6.25083 6.27801 6.30723 6.43204 6.58044 6.66272 6.69283 6.70749 6.91190 7.11535 7.43305 7.57485 7.61842 7.64963 7.83059 8.26767 8.38722 9.21571 9.85223 10.53746 11.42959 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014030 B = 0.002723 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.182897 B =10282.023163 C =11519.631493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.177 3.823 3 C -0.163 4.163 4 C -0.144 4.144 5 N -0.352 5.352 6 C 0.117 3.883 7 C -0.282 4.282 8 C 0.592 3.408 9 O -0.554 6.554 10 N -0.599 5.599 11 C 0.104 3.896 12 C -0.129 4.129 13 C 0.168 3.832 14 H 0.020 0.980 15 C -0.123 4.123 16 H 0.078 0.922 17 C -0.136 4.136 18 C 0.177 3.823 19 N -0.595 5.595 20 C -0.225 4.225 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.128 3.872 29 C 0.076 3.924 30 N -0.293 5.293 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.179 0.821 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.038 0.962 48 H 0.054 0.946 49 H 0.252 0.748 50 H 0.068 0.932 51 H 0.089 0.911 52 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.914 0.000 15.088 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.095 3.905 3 C -0.221 4.221 4 C -0.201 4.201 5 N -0.132 5.132 6 C -0.034 4.034 7 C -0.297 4.297 8 C 0.380 3.620 9 O -0.433 6.433 10 N -0.331 5.331 11 C -0.019 4.019 12 C -0.168 4.168 13 C 0.060 3.940 14 H 0.037 0.963 15 C -0.144 4.144 16 H 0.097 0.903 17 C -0.175 4.175 18 C 0.053 3.947 19 N -0.319 5.319 20 C -0.353 4.353 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C 0.006 3.994 29 C -0.111 4.111 30 N -0.113 5.113 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.197 0.803 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.086 0.914 51 H 0.107 0.893 52 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -19.167 -0.051 16.016 24.978 hybrid contribution 1.121 0.252 -0.478 1.244 sum -18.046 0.202 15.538 23.814 Atomic orbital electron populations 1.22281 0.92694 1.03518 1.03375 1.20834 0.94529 0.92027 0.83103 1.22287 1.02733 0.93350 1.03738 1.21916 1.02429 1.01321 0.94445 1.48756 1.46329 1.12007 1.06124 1.22692 0.97000 0.99448 0.84237 1.20223 1.16712 0.97832 0.94955 1.17371 0.81521 0.77235 0.85848 1.90741 1.42510 1.46449 1.63618 1.48115 1.17369 1.58434 1.09207 1.21981 0.88466 0.96267 0.95205 1.21813 0.94439 1.01742 0.98841 1.20627 0.86871 0.94804 0.91725 0.96268 1.22622 0.93775 0.99781 0.98176 0.90324 1.22717 0.99521 1.00533 0.94727 1.21525 0.87736 0.98906 0.86536 1.44200 1.01687 1.69899 1.16137 1.18947 0.83386 1.33489 0.99461 0.90463 1.24787 0.97805 1.01021 0.96854 1.69930 1.27534 1.45157 1.14347 0.86243 0.83671 0.77620 0.78490 1.21208 1.21658 1.21249 1.21614 0.97824 1.00688 0.79239 1.24122 0.98065 0.99195 0.89701 1.77122 1.18117 0.95273 1.20773 0.91609 0.90200 0.91456 0.89848 0.91155 0.91400 0.90884 0.91392 0.90861 0.80348 0.89397 0.91773 0.90645 0.91595 0.92319 0.92097 0.94391 0.92793 0.93739 0.91357 0.89278 0.79248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 8.71 37.16 0.32 -0.61 16 2 C 0.18 1.27 1.23 -131.82 -0.16 1.11 16 3 C -0.16 -0.93 8.29 37.16 0.31 -0.63 16 4 C -0.14 -0.96 8.07 37.16 0.30 -0.66 16 5 N -0.35 -3.61 3.41 -48.11 -0.16 -3.77 16 6 C 0.12 1.31 10.57 -16.56 -0.18 1.13 16 7 C -0.28 -3.68 5.28 -105.07 -0.55 -4.24 16 8 C 0.59 9.19 7.56 -12.52 -0.09 9.09 16 9 O -0.55 -10.19 16.46 5.27 0.09 -10.10 16 10 N -0.60 -8.98 3.00 -174.00 -0.52 -9.50 16 11 C 0.10 1.42 5.33 -3.71 -0.02 1.40 16 12 C -0.13 -2.21 5.46 -27.20 -0.15 -2.36 16 13 C 0.17 3.35 2.57 -67.98 -0.17 3.18 16 14 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 15 C -0.12 -2.21 2.85 -89.37 -0.26 -2.47 16 16 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 17 C -0.14 -2.54 6.54 -25.14 -0.16 -2.70 16 18 C 0.18 4.27 5.45 -1.92 -0.01 4.26 16 19 N -0.59 -14.82 3.35 -163.09 -0.55 -15.37 16 20 C -0.22 -6.10 9.88 -15.06 -0.15 -6.25 16 21 H 0.08 2.01 7.21 -52.49 -0.38 1.63 16 22 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 23 N -0.92 -27.01 10.44 55.49 0.58 -26.43 16 24 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.13 2.00 5.95 -3.76 -0.02 1.98 16 29 C 0.08 0.89 9.53 -16.98 -0.16 0.73 16 30 N -0.29 -3.47 11.56 30.86 0.36 -3.12 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.37 7.35 -51.93 -0.38 -0.01 16 37 H 0.07 0.56 8.03 -51.93 -0.42 0.14 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.18 1.66 7.54 -52.49 -0.40 1.26 16 41 H 0.09 1.08 4.31 -51.93 -0.22 0.85 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.30 7.62 -51.93 -0.40 0.90 16 44 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 45 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 48 H 0.05 1.45 7.21 -51.93 -0.37 1.07 16 49 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 50 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 51 H 0.09 1.43 7.02 -51.93 -0.36 1.06 16 52 H 0.19 1.79 7.08 -52.49 -0.37 1.42 16 LS Contribution 400.99 15.07 6.04 6.04 Total: -1.00 -33.27 400.99 -9.19 -42.47 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -8.74 Total: 0.20 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.26 Total: 2.63 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.30 Total: -58.19 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.27 -9.19 -42.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036756510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.335 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds