Wall clock time and date at job start Wed Apr 1 2020 04:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47444 * 2 1 4 4 C 1.53001 * 109.46950 * 120.00093 * 2 1 3 5 5 N 1.46493 * 109.47045 * 239.99421 * 2 1 3 6 6 C 1.34265 * 125.75245 * 74.72236 * 5 2 1 7 7 C 1.38037 * 107.42031 * 179.84396 * 6 5 2 8 8 C 1.47425 * 126.41720 * 180.16009 * 7 6 5 9 9 O 1.21605 * 119.99911 * 318.13084 * 8 7 6 10 10 N 1.34774 * 120.00320 * 138.13457 * 8 7 6 11 11 C 1.46596 * 119.68399 * 3.34509 * 10 8 7 12 12 C 1.53542 * 110.81940 * 227.73539 * 11 10 8 13 13 C 1.51526 * 107.42104 * 309.22011 * 12 11 10 14 14 H 1.09003 * 108.81268 * 306.40451 * 13 12 11 15 15 C 1.55359 * 107.78545 * 64.70598 * 13 12 11 16 16 H 1.09001 * 112.26824 * 50.84198 * 15 13 12 17 17 C 1.53739 * 100.22410 * 169.05652 * 15 13 12 18 18 C 1.55282 * 101.84509 * 320.91313 * 17 15 13 19 19 N 1.45470 * 117.33950 * 181.74701 * 13 12 11 20 20 C 1.36934 * 126.40318 * 30.64796 * 19 13 12 21 21 H 1.07998 * 120.00633 * 359.97438 * 20 19 13 22 22 C 1.38815 * 119.99778 * 179.97438 * 20 19 13 23 23 N 1.31623 * 120.00049 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00063 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46797 * 59.99818 * 24 22 20 26 26 H 1.48502 * 109.47154 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46901 * 299.99846 * 24 22 20 28 28 C 1.47722 * 119.68806 * 183.61747 * 10 8 7 29 29 C 1.41295 * 107.17105 * 0.41550 * 7 6 5 30 30 N 1.30448 * 108.02061 * 359.74139 * 29 7 6 31 31 H 1.08999 * 109.46932 * 59.99966 * 1 2 3 32 32 H 1.09002 * 109.47038 * 300.00230 * 1 2 3 33 33 H 1.08990 * 109.47545 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47191 * 59.99864 * 3 2 1 35 35 H 1.08999 * 109.47145 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47084 * 299.99941 * 3 2 1 37 37 H 1.09000 * 109.47491 * 59.99377 * 4 2 1 38 38 H 1.08999 * 109.47301 * 179.97438 * 4 2 1 39 39 H 1.09002 * 109.46987 * 299.99708 * 4 2 1 40 40 H 1.07998 * 126.28904 * 359.97438 * 6 5 2 41 41 H 1.09007 * 109.25556 * 348.10277 * 11 10 8 42 42 H 1.09006 * 109.25914 * 107.53750 * 11 10 8 43 43 H 1.08995 * 109.96523 * 189.66795 * 12 11 10 44 44 H 1.08994 * 109.78420 * 68.66634 * 12 11 10 45 45 H 1.09005 * 110.95211 * 79.05412 * 17 15 13 46 46 H 1.09004 * 110.95570 * 202.77327 * 17 15 13 47 47 H 1.09002 * 109.91948 * 141.82865 * 18 17 15 48 48 H 1.09001 * 109.92111 * 263.12793 * 18 17 15 49 49 H 0.96995 * 120.00062 * 179.97438 * 23 22 20 50 50 H 1.09003 * 110.07296 * 247.15230 * 28 10 8 51 51 H 1.09000 * 110.06608 * 8.73522 * 28 10 8 52 52 H 1.07996 * 125.99270 * 179.78304 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 2.0183 -0.6907 -1.1960 6 6 2.0091 -0.1982 -2.4451 7 6 2.5569 -1.1582 -3.2719 8 6 2.7511 -1.0506 -4.7293 9 8 1.8817 -0.5601 -5.4239 10 7 3.8919 -1.4960 -5.2920 11 6 4.9039 -2.1527 -4.4591 12 6 6.2994 -1.5776 -4.7408 13 6 6.5090 -1.6098 -6.2411 14 1 6.3271 -2.6229 -6.5998 15 6 5.4747 -0.6463 -6.8856 16 1 5.4827 0.3395 -6.4205 17 6 6.0139 -0.5896 -8.3242 18 6 7.5486 -0.5651 -8.0886 19 7 7.7912 -1.1444 -6.7467 20 6 8.9969 -1.2265 -6.1028 21 1 9.0554 -1.6716 -5.1205 22 6 10.1441 -0.7376 -6.7126 23 7 10.0730 -0.1957 -7.9100 24 14 11.7889 -0.8489 -5.8340 25 1 12.1077 -2.2730 -5.5589 26 1 12.8491 -0.2615 -6.6919 27 1 11.7172 -0.1013 -4.5529 28 6 4.1133 -1.3123 -6.7409 29 6 2.8914 -2.2657 -2.4607 30 7 2.5675 -1.9773 -1.2305 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 -1.0275 0.0005 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6765 -1.7489 1.2493 38 1 3.1299 -0.7217 1.2491 39 1 1.6766 -0.2074 2.1392 40 1 1.6425 0.7718 -2.7470 41 1 4.6587 -2.0000 -3.4080 42 1 4.9090 -3.2211 -4.6749 43 1 7.0585 -2.1843 -4.2473 44 1 6.3546 -0.5502 -4.3808 45 1 5.7198 -1.4762 -8.8859 46 1 5.6825 0.3177 -8.8293 47 1 8.0505 -1.1644 -8.8482 48 1 7.9130 0.4617 -8.1212 49 1 10.8745 0.1462 -8.3360 50 1 4.1144 -2.2789 -7.2447 51 1 3.3371 -0.6718 -7.1596 52 1 3.3377 -3.1889 -2.7997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036756510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:18 Heat of formation + Delta-G solvation = 56.123303 kcal Electronic energy + Delta-G solvation = -31511.979444 eV Core-core repulsion = 27513.285015 eV Total energy + Delta-G solvation = -3998.694429 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.59765 -41.16646 -39.49695 -37.68967 -36.75290 -34.54010 -33.02639 -31.97239 -31.77319 -30.80622 -29.47041 -28.38005 -28.30582 -26.71429 -25.46796 -24.13584 -23.49224 -22.67293 -21.84217 -21.12006 -20.59211 -20.01235 -18.62038 -17.92799 -17.37984 -16.99171 -16.70393 -16.45990 -16.09141 -15.90136 -15.75723 -15.55816 -15.09610 -14.93027 -14.71259 -14.54265 -14.20589 -14.13679 -13.82981 -13.68623 -13.32786 -13.23791 -13.23498 -13.11070 -13.06663 -13.00342 -12.74799 -12.63959 -12.45503 -12.33570 -12.23163 -12.07496 -12.00555 -11.80382 -11.71467 -11.58294 -11.47553 -10.98790 -10.82646 -10.67954 -10.47793 -9.75425 -9.52032 -8.84799 -7.81321 -5.15440 0.64041 1.22440 1.34809 1.46457 1.49389 1.55306 1.91805 2.30129 2.52303 3.33000 3.37229 3.48364 3.73166 3.74445 3.78528 3.85118 3.87367 3.94578 4.02008 4.06590 4.23956 4.25803 4.37693 4.44042 4.54496 4.58450 4.63393 4.64103 4.69364 4.70648 4.75859 4.79006 4.82743 4.83970 4.86244 4.87883 4.94225 5.08246 5.09306 5.11766 5.21384 5.22723 5.25075 5.45969 5.50610 5.56994 5.60647 5.69407 5.79166 5.95942 6.23074 6.43861 6.58742 7.11687 7.20150 7.82151 8.51079 9.30502 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014030 B = 0.002723 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.182897 B =10282.023163 C =11519.631493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.167 3.833 3 C -0.160 4.160 4 C -0.140 4.140 5 N -0.345 5.345 6 C 0.120 3.880 7 C -0.308 4.308 8 C 0.595 3.405 9 O -0.587 6.587 10 N -0.601 5.601 11 C 0.115 3.885 12 C -0.122 4.122 13 C 0.158 3.842 14 H 0.026 0.974 15 C -0.108 4.108 16 H 0.060 0.940 17 C -0.121 4.121 18 C 0.182 3.818 19 N -0.616 5.616 20 C -0.229 4.229 21 H 0.087 0.913 22 C -0.071 4.071 23 N -0.955 5.955 24 Si 0.974 3.026 25 H -0.276 1.276 26 H -0.298 1.298 27 H -0.278 1.278 28 C 0.136 3.864 29 C 0.077 3.923 30 N -0.310 5.310 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.100 0.900 40 H 0.195 0.805 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.047 0.953 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.005 0.995 48 H 0.015 0.985 49 H 0.244 0.756 50 H 0.085 0.915 51 H 0.088 0.912 52 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.680 -0.537 17.404 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.086 3.914 3 C -0.218 4.218 4 C -0.197 4.197 5 N -0.125 5.125 6 C -0.032 4.032 7 C -0.323 4.323 8 C 0.385 3.615 9 O -0.469 6.469 10 N -0.332 5.332 11 C -0.008 4.008 12 C -0.161 4.161 13 C 0.051 3.949 14 H 0.043 0.957 15 C -0.128 4.128 16 H 0.079 0.921 17 C -0.160 4.160 18 C 0.057 3.943 19 N -0.340 5.340 20 C -0.358 4.358 21 H 0.104 0.896 22 C -0.263 4.263 23 N -0.604 5.604 24 Si 0.802 3.198 25 H -0.202 1.202 26 H -0.225 1.225 27 H -0.204 1.204 28 C 0.014 3.986 29 C -0.110 4.110 30 N -0.129 5.129 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.212 0.788 41 H 0.124 0.876 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.023 0.977 48 H 0.034 0.966 49 H 0.054 0.946 50 H 0.104 0.896 51 H 0.106 0.894 52 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -20.960 -0.616 18.390 27.890 hybrid contribution 1.618 0.444 -1.131 2.023 sum -19.342 -0.172 17.259 25.923 Atomic orbital electron populations 1.22271 0.91394 1.03081 1.04659 1.21239 0.95513 0.92580 0.82091 1.22304 1.01854 0.92481 1.05190 1.21908 1.01471 1.00976 0.95372 1.49106 1.45206 1.11485 1.06716 1.22970 0.95975 0.99767 0.84447 1.20136 1.18970 0.99301 0.93857 1.17649 0.81007 0.76240 0.86652 1.90718 1.43605 1.47967 1.64583 1.48145 1.17598 1.58428 1.08987 1.21997 0.85790 0.97027 0.96019 1.21729 0.96842 1.01016 0.96507 1.20867 0.85114 0.95069 0.93833 0.95704 1.22445 0.94771 0.98634 0.96984 0.92129 1.22587 0.95190 1.02429 0.95783 1.21300 0.91226 0.95905 0.85855 1.44491 1.02934 1.69976 1.16608 1.19369 0.84465 1.32220 0.99725 0.89562 1.25620 1.01292 1.01666 0.97755 1.70161 1.27701 1.46689 1.15894 0.85216 0.79338 0.77855 0.77348 1.20208 1.22484 1.20388 1.21493 0.95774 1.01193 0.80110 1.24400 0.97785 0.99499 0.89293 1.77098 1.18639 0.96251 1.20958 0.91696 0.87578 0.92713 0.87328 0.92506 0.91090 0.92113 0.92810 0.88165 0.78800 0.87644 0.89341 0.90704 0.93385 0.90186 0.90443 0.97709 0.96618 0.94632 0.89645 0.89385 0.77403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.71 71.98 0.63 -0.80 16 2 C 0.17 2.02 1.23 3.60 0.00 2.03 16 3 C -0.16 -1.45 8.29 71.98 0.60 -0.85 16 4 C -0.14 -1.59 8.07 71.98 0.58 -1.01 16 5 N -0.35 -6.49 3.41 -306.14 -1.04 -7.54 16 6 C 0.12 2.51 10.57 84.27 0.89 3.40 16 7 C -0.31 -7.53 5.28 -20.15 -0.11 -7.63 16 8 C 0.59 17.56 7.56 86.66 0.66 18.21 16 9 O -0.59 -20.98 16.46 -4.05 -0.07 -21.04 16 10 N -0.60 -16.82 3.00 -822.68 -2.47 -19.29 16 11 C 0.11 2.84 5.33 86.54 0.46 3.30 16 12 C -0.12 -4.02 5.46 30.29 0.17 -3.85 16 13 C 0.16 6.19 2.57 45.51 0.12 6.31 16 14 H 0.03 0.99 7.92 -2.39 -0.02 0.97 16 15 C -0.11 -3.79 2.85 -9.98 -0.03 -3.82 16 16 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 17 C -0.12 -4.47 6.54 31.63 0.21 -4.26 16 18 C 0.18 9.09 5.45 86.84 0.47 9.56 16 19 N -0.62 -31.20 3.35 -669.91 -2.24 -33.44 16 20 C -0.23 -12.60 9.88 84.03 0.83 -11.77 16 21 H 0.09 4.47 7.21 -2.91 -0.02 4.45 16 22 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 23 N -0.95 -58.17 10.44 21.65 0.23 -57.95 16 24 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 28 C 0.14 4.00 5.95 85.89 0.51 4.52 16 29 C 0.08 1.64 9.53 85.65 0.82 2.45 16 30 N -0.31 -6.83 11.56 -56.27 -0.65 -7.48 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 0.61 7.35 -2.39 -0.02 0.59 16 37 H 0.06 0.85 8.03 -2.39 -0.02 0.83 16 38 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.20 3.28 7.54 -2.91 -0.02 3.26 16 41 H 0.11 2.32 4.31 -2.38 -0.01 2.31 16 42 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.07 2.48 7.62 -2.39 -0.02 2.46 16 44 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 45 H 0.08 2.63 8.12 -2.38 -0.02 2.61 16 46 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 47 H 0.00 0.26 7.77 -2.39 -0.02 0.24 16 48 H 0.02 0.88 7.21 -2.39 -0.02 0.87 16 49 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16 50 H 0.09 2.26 8.08 -2.39 -0.02 2.24 16 51 H 0.09 2.67 7.02 -2.39 -0.02 2.65 16 52 H 0.21 3.37 7.08 -2.91 -0.02 3.35 16 Total: -1.00 -74.70 400.99 3.94 -70.75 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.90 Total: 15.87 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 7.27 Total: 12.21 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -6.18 Total: -125.70 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.07 Total: -21.04 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -74.70 3.94 -70.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036756510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.877 kcal (2) G-P(sol) polarization free energy of solvation -74.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds