Wall clock time and date at job start Wed Apr 1 2020 04:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47278 * 2 1 4 4 C 1.53002 * 109.47440 * 119.99787 * 2 1 3 5 5 N 1.46504 * 109.47306 * 174.99850 * 4 2 1 6 6 C 1.34259 * 125.75160 * 125.00404 * 5 4 2 7 7 C 1.38043 * 107.41521 * 180.02562 * 6 5 4 8 8 C 1.47432 * 126.41515 * 179.97438 * 7 6 5 9 9 O 1.21601 * 119.99806 * 223.32404 * 8 7 6 10 10 N 1.34778 * 119.99974 * 43.31571 * 8 7 6 11 11 C 1.46599 * 119.68417 * 355.66203 * 10 8 7 12 12 C 1.53953 * 110.57413 * 132.19312 * 11 10 8 13 13 C 1.51510 * 107.34884 * 51.05323 * 12 11 10 14 14 H 1.09001 * 108.80759 * 53.43811 * 13 12 11 15 15 C 1.55100 * 107.77064 * 295.29892 * 13 12 11 16 16 H 1.08998 * 111.32993 * 308.99289 * 15 13 12 17 17 C 1.53750 * 100.32189 * 191.11237 * 15 13 12 18 18 C 1.55287 * 101.84052 * 38.94587 * 17 15 13 19 19 N 1.45474 * 117.35387 * 178.09101 * 13 12 11 20 20 C 1.36934 * 126.40314 * 329.41279 * 19 13 12 21 21 H 1.08001 * 120.00090 * 1.98711 * 20 19 13 22 22 C 1.38811 * 120.00158 * 181.98105 * 20 19 13 23 23 N 1.31615 * 119.99829 * 207.56530 * 22 20 19 24 24 Si 1.86795 * 119.99873 * 27.55620 * 22 20 19 25 25 H 1.48496 * 109.47310 * 180.02562 * 24 22 20 26 26 H 1.48501 * 109.46953 * 60.00544 * 24 22 20 27 27 H 1.48498 * 109.47476 * 300.00230 * 24 22 20 28 28 C 1.47790 * 119.83277 * 176.00863 * 10 8 7 29 29 C 1.41287 * 107.17048 * 0.23393 * 7 6 5 30 30 N 1.30448 * 108.02339 * 359.60097 * 29 7 6 31 31 H 1.09005 * 109.47261 * 300.00077 * 1 2 3 32 32 H 1.09003 * 109.47334 * 60.00182 * 1 2 3 33 33 H 1.08999 * 109.47591 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47492 * 240.00249 * 2 1 3 35 35 H 1.09003 * 109.47200 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.46789 * 300.00151 * 3 2 1 37 37 H 1.08998 * 109.47359 * 59.99993 * 3 2 1 38 38 H 1.09004 * 109.46630 * 55.00124 * 4 2 1 39 39 H 1.09001 * 109.47151 * 294.99862 * 4 2 1 40 40 H 1.07997 * 126.29255 * 0.02562 * 6 5 4 41 41 H 1.09002 * 109.25486 * 11.91553 * 11 10 8 42 42 H 1.09000 * 109.25659 * 252.47521 * 11 10 8 43 43 H 1.09004 * 109.88621 * 291.59428 * 12 11 10 44 44 H 1.09003 * 109.88423 * 170.51534 * 12 11 10 45 45 H 1.09000 * 110.95478 * 280.80760 * 17 15 13 46 46 H 1.09002 * 110.95034 * 157.08448 * 17 15 13 47 47 H 1.09000 * 109.91996 * 218.16929 * 18 17 15 48 48 H 1.09002 * 110.08570 * 96.96219 * 18 17 15 49 49 H 0.97000 * 120.00543 * 354.95866 * 23 22 20 50 50 H 1.08993 * 110.64627 * 112.74046 * 28 10 8 51 51 H 1.09003 * 109.73626 * 351.00861 * 28 10 8 52 52 H 1.08001 * 125.99012 * 179.73965 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1905 6 6 4.3560 -0.3963 2.1313 7 6 5.6324 -0.6837 1.6910 8 6 6.8902 -0.3896 2.4016 9 8 7.8400 0.0652 1.7936 10 7 6.9873 -0.6248 3.7252 11 6 5.8102 -1.0826 4.4695 12 6 6.1672 -2.2878 5.3584 13 6 7.3916 -1.9071 6.1654 14 1 7.1934 -0.9685 6.6830 15 6 8.5666 -1.7009 5.1742 16 1 8.6716 -2.5519 4.5013 17 6 9.7454 -1.6175 6.1577 18 6 9.3608 -2.6946 7.2081 19 7 7.8941 -2.8842 7.1189 20 6 7.1512 -3.8098 7.8017 21 1 6.0875 -3.8820 7.6295 22 6 7.7653 -4.6555 8.7153 23 7 7.2512 -5.8415 8.9628 24 14 9.3213 -4.1103 9.5931 25 1 9.7759 -5.1868 10.5094 26 1 9.0429 -2.8789 10.3751 27 1 10.3826 -3.8318 8.5924 28 6 8.2759 -0.4125 4.4170 29 6 5.5079 -1.3069 0.4292 30 7 4.2377 -1.3914 0.1443 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 1.6053 -1.7198 1.2951 39 1 1.7517 -0.1582 2.1370 40 1 4.0940 0.0858 3.0615 41 1 5.0306 -1.3736 3.7655 42 1 5.4428 -0.2700 5.0963 43 1 6.3884 -3.1549 4.7360 44 1 5.3372 -2.5133 6.0281 45 1 9.8023 -0.6297 6.6151 46 1 10.6835 -1.8716 5.6642 47 1 9.6309 -2.3523 8.2071 48 1 9.8705 -3.6323 6.9866 49 1 6.4048 -6.0963 8.5632 50 1 8.2050 0.4228 5.1136 51 1 9.0605 -0.2243 3.6842 52 1 6.3216 -1.6546 -0.1900 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036855407.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:25 Heat of formation + Delta-G solvation = 83.235570 kcal Electronic energy + Delta-G solvation = -31337.023295 eV Core-core repulsion = 27339.504543 eV Total energy + Delta-G solvation = -3997.518753 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.71187 -40.00047 -38.27865 -36.84337 -35.54541 -32.91750 -32.39373 -31.63899 -31.13134 -29.80380 -28.19460 -27.67901 -26.94586 -25.10815 -23.54889 -22.84790 -22.03806 -21.67002 -20.56142 -20.54004 -19.70219 -19.07220 -17.49437 -17.07828 -16.63452 -15.94872 -15.90061 -15.22582 -15.12009 -15.07115 -14.82154 -14.62941 -13.99954 -13.93034 -13.75937 -13.46908 -13.21985 -13.08029 -12.94475 -12.83138 -12.75358 -12.62751 -12.47707 -12.11473 -11.82343 -11.72586 -11.53050 -11.41805 -11.35914 -11.21059 -10.94165 -10.83581 -10.74460 -10.45074 -10.05542 -9.87911 -9.77302 -9.65425 -9.55562 -8.91508 -8.76846 -8.52853 -8.36813 -7.09720 -6.33517 -3.14092 1.39914 2.08638 2.16703 2.95584 3.28969 3.43897 3.53290 3.71328 3.95700 4.26853 4.36128 4.46502 4.54688 4.64067 4.71593 4.77302 4.88509 4.97259 4.98257 5.07158 5.12489 5.14915 5.20261 5.29697 5.34387 5.35224 5.39059 5.41437 5.47162 5.47704 5.58670 5.60805 5.68942 5.76025 5.80592 5.84256 5.93547 6.02646 6.07502 6.14650 6.24196 6.31001 6.33772 6.50816 6.56002 6.58621 6.73015 6.84804 6.94227 7.35890 7.50466 7.69244 8.28138 8.32854 9.03561 9.63521 10.29207 11.17328 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.002584 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.475776 B =10832.463960 C =11953.399051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.148 4.148 4 C 0.132 3.868 5 N -0.355 5.355 6 C 0.092 3.908 7 C -0.279 4.279 8 C 0.593 3.407 9 O -0.547 6.547 10 N -0.603 5.603 11 C 0.103 3.897 12 C -0.125 4.125 13 C 0.169 3.831 14 H 0.021 0.979 15 C -0.125 4.125 16 H 0.084 0.916 17 C -0.121 4.121 18 C 0.120 3.880 19 N -0.602 5.602 20 C -0.328 4.328 21 H 0.078 0.922 22 C -0.020 4.020 23 N -0.919 5.919 24 Si 1.045 2.955 25 H -0.300 1.300 26 H -0.298 1.298 27 H -0.269 1.269 28 C 0.130 3.870 29 C 0.099 3.901 30 N -0.295 5.295 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.183 0.817 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.029 0.971 48 H 0.048 0.952 49 H 0.261 0.739 50 H 0.070 0.930 51 H 0.091 0.909 52 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.650 14.668 -16.182 24.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.206 4.206 4 C 0.011 3.989 5 N -0.134 5.134 6 C -0.058 4.058 7 C -0.294 4.294 8 C 0.381 3.619 9 O -0.425 6.425 10 N -0.335 5.335 11 C -0.020 4.020 12 C -0.165 4.165 13 C 0.061 3.939 14 H 0.038 0.962 15 C -0.146 4.146 16 H 0.102 0.898 17 C -0.160 4.160 18 C -0.004 4.004 19 N -0.328 5.328 20 C -0.455 4.455 21 H 0.096 0.904 22 C -0.221 4.221 23 N -0.560 5.560 24 Si 0.877 3.123 25 H -0.228 1.228 26 H -0.226 1.226 27 H -0.196 1.196 28 C 0.008 3.992 29 C -0.088 4.088 30 N -0.115 5.115 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.200 0.800 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.047 0.953 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.089 0.911 51 H 0.110 0.890 52 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -10.084 13.938 -16.206 23.634 hybrid contribution -0.794 0.739 -0.128 1.092 sum -10.878 14.677 -16.334 24.506 Atomic orbital electron populations 1.21791 0.93738 1.02350 1.02522 1.21423 0.96300 0.96926 0.98150 1.21842 1.01466 0.95208 1.02060 1.22004 0.74010 1.02632 1.00226 1.48496 1.06773 1.43985 1.14155 1.23126 0.89299 0.98456 0.94962 1.20276 0.92835 1.16796 0.99494 1.17393 0.86366 0.77058 0.81108 1.90750 1.39612 1.45392 1.66768 1.48150 1.11895 1.65875 1.07598 1.22063 0.87536 0.97160 0.95274 1.21823 0.99873 0.96814 0.97953 1.20534 0.91836 0.92418 0.89133 0.96171 1.22629 0.97420 0.97445 0.97065 0.89785 1.22450 0.97368 0.99485 0.96691 1.22392 0.85842 0.96407 0.95808 1.44536 1.01525 1.39252 1.47499 1.19953 0.93086 1.11718 1.20768 0.90398 1.25677 1.04996 0.93066 0.98321 1.70956 1.19516 1.15043 1.50493 0.84338 0.76757 0.74644 0.76564 1.22799 1.22586 1.19569 1.21570 0.84744 0.96954 0.95905 1.23918 0.94183 0.96531 0.94161 1.77162 1.04154 1.20379 1.09834 0.92282 0.91844 0.92155 0.89417 0.92582 0.92198 0.92569 0.89143 0.88322 0.80024 0.89646 0.91829 0.91352 0.90663 0.91434 0.91228 0.95347 0.93394 0.92886 0.91149 0.89027 0.79311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.19 37.15 0.34 -0.28 16 2 C -0.11 -0.65 3.00 -90.62 -0.27 -0.93 16 3 C -0.15 -0.96 9.08 37.16 0.34 -0.62 16 4 C 0.13 0.82 5.88 -4.04 -0.02 0.80 16 5 N -0.36 -3.35 3.10 -60.80 -0.19 -3.54 16 6 C 0.09 0.89 8.97 -16.56 -0.15 0.74 16 7 C -0.28 -3.47 5.29 -105.07 -0.56 -4.03 16 8 C 0.59 8.74 7.57 -12.52 -0.09 8.65 16 9 O -0.55 -9.73 16.48 5.28 0.09 -9.64 16 10 N -0.60 -8.39 2.99 -173.70 -0.52 -8.91 16 11 C 0.10 1.29 5.39 -3.49 -0.02 1.27 16 12 C -0.13 -2.09 5.47 -26.99 -0.15 -2.23 16 13 C 0.17 3.20 2.57 -68.13 -0.18 3.02 16 14 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 15 C -0.13 -2.07 2.84 -89.51 -0.25 -2.32 16 16 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 17 C -0.12 -1.99 6.54 -25.13 -0.16 -2.16 16 18 C 0.12 2.56 4.53 -1.92 -0.01 2.55 16 19 N -0.60 -14.25 3.30 -163.26 -0.54 -14.79 16 20 C -0.33 -9.08 10.06 -15.06 -0.15 -9.23 16 21 H 0.08 2.24 7.42 -52.49 -0.39 1.85 16 22 C -0.02 -0.58 5.46 -17.43 -0.10 -0.68 16 23 N -0.92 -28.55 13.70 55.49 0.76 -27.79 16 24 Si 1.04 25.91 25.25 -169.99 -4.29 21.62 16 25 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 26 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.27 -6.01 4.65 56.52 0.26 -5.75 16 28 C 0.13 1.86 5.97 -3.72 -0.02 1.83 16 29 C 0.10 1.21 12.02 -16.98 -0.20 1.00 16 30 N -0.30 -3.48 12.24 30.86 0.38 -3.10 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.68 8.04 -51.93 -0.42 0.26 16 35 H 0.06 0.48 7.75 -51.93 -0.40 0.08 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.39 8.06 -51.93 -0.42 -0.03 16 40 H 0.18 1.24 7.08 -52.49 -0.37 0.86 16 41 H 0.09 0.94 4.31 -51.93 -0.22 0.71 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 44 H 0.07 1.31 7.62 -51.93 -0.40 0.91 16 45 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.03 0.63 4.86 -51.93 -0.25 0.38 16 48 H 0.05 1.09 6.64 -51.93 -0.34 0.75 16 49 H 0.26 8.00 8.73 -40.82 -0.36 7.65 16 50 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 51 H 0.09 1.34 7.02 -51.93 -0.36 0.98 16 52 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 396.80 15.07 5.98 5.98 Total: -1.00 -34.66 396.80 -8.76 -43.43 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -8.77 Total: -0.65 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -1.66 Total: -2.61 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.11 Total: -58.13 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -4.29 Total: 21.62 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.66 -8.76 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036855407.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.662 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds