Wall clock time and date at job start Wed Apr 1 2020 04:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46838 * 2 1 4 4 C 1.52999 * 109.46973 * 119.99688 * 2 1 3 5 5 N 1.46495 * 109.47116 * 65.00130 * 4 2 1 6 6 C 1.34262 * 125.75064 * 124.99769 * 5 4 2 7 7 C 1.38049 * 107.41630 * 179.97438 * 6 5 4 8 8 C 1.47427 * 126.41578 * 179.97438 * 7 6 5 9 9 O 1.21603 * 119.99557 * 30.45106 * 8 7 6 10 10 N 1.34772 * 119.99907 * 210.44663 * 8 7 6 11 11 C 1.47218 * 121.36104 * 6.09265 * 10 8 7 12 12 C 1.52198 * 107.66031 * 122.18394 * 11 10 8 13 13 C 1.53155 * 111.34780 * 57.58438 * 12 11 10 14 14 H 1.09007 * 111.79670 * 70.81803 * 13 12 11 15 15 C 1.53934 * 110.88445 * 305.23074 * 13 12 11 16 16 H 1.09002 * 109.50868 * 171.49871 * 15 13 12 17 17 C 1.54203 * 102.20919 * 286.67083 * 15 13 12 18 18 C 1.54722 * 102.06478 * 322.43395 * 17 15 13 19 19 N 1.47211 * 107.24298 * 21.51763 * 18 17 15 20 20 C 1.36939 * 125.89358 * 183.75020 * 19 18 17 21 21 H 1.07997 * 120.00253 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99840 * 359.97438 * 20 19 18 23 23 N 1.31621 * 120.00025 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00246 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46893 * 59.99770 * 24 22 20 26 26 H 1.48500 * 109.47364 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47234 * 300.00051 * 24 22 20 28 28 C 1.46714 * 121.35749 * 186.37047 * 10 8 7 29 29 C 1.41292 * 107.16702 * 0.02562 * 7 6 5 30 30 N 1.30452 * 108.02559 * 359.74039 * 29 7 6 31 31 H 1.08997 * 109.47193 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47688 * 300.00183 * 1 2 3 33 33 H 1.08999 * 109.47369 * 60.00364 * 1 2 3 34 34 H 1.09000 * 109.47199 * 239.99978 * 2 1 3 35 35 H 1.08998 * 109.47009 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.46740 * 299.99436 * 3 2 1 37 37 H 1.08998 * 109.47131 * 59.99476 * 3 2 1 38 38 H 1.09005 * 109.47034 * 185.00642 * 4 2 1 39 39 H 1.09003 * 109.47197 * 304.99816 * 4 2 1 40 40 H 1.08001 * 126.29234 * 359.96190 * 6 5 4 41 41 H 1.08995 * 109.80393 * 241.46916 * 11 10 8 42 42 H 1.08999 * 109.80098 * 2.34629 * 11 10 8 43 43 H 1.08998 * 108.54802 * 297.34379 * 12 11 10 44 44 H 1.09008 * 109.31753 * 178.32561 * 12 11 10 45 45 H 1.08993 * 110.91617 * 80.62806 * 17 15 13 46 46 H 1.09002 * 110.91257 * 204.24550 * 17 15 13 47 47 H 1.08997 * 109.89345 * 262.11018 * 18 17 15 48 48 H 1.09008 * 109.88585 * 140.92231 * 18 17 15 49 49 H 0.97001 * 120.00303 * 179.97438 * 23 22 20 50 50 H 1.08996 * 109.14738 * 352.63049 * 28 10 8 51 51 H 1.08997 * 109.14200 * 111.77628 * 28 10 8 52 52 H 1.08001 * 125.98738 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1327 1.1907 6 6 2.4870 -3.1800 1.2873 7 6 1.7250 -4.3265 1.1844 8 6 2.2203 -5.7141 1.2358 9 8 3.2065 -5.9836 1.8941 10 7 1.5799 -6.6839 0.5534 11 6 0.4653 -6.3723 -0.3566 12 6 0.8357 -6.8963 -1.7367 13 6 1.1268 -8.3995 -1.7027 14 1 0.2201 -8.9839 -1.5451 15 6 2.2081 -8.7256 -0.6568 16 1 2.2905 -9.8066 -0.5433 17 6 3.4885 -8.2000 -1.3368 18 6 3.2409 -8.5661 -2.8195 19 7 1.7885 -8.7347 -2.9907 20 6 1.1561 -9.1320 -4.1385 21 1 0.0804 -9.2248 -4.1580 22 6 1.8979 -9.4153 -5.2771 23 7 3.2090 -9.3016 -5.2536 24 14 1.0355 -9.9579 -6.8427 25 1 0.0943 -8.8969 -7.2826 26 1 2.0441 -10.1963 -7.9063 27 1 0.2824 -11.2115 -6.5841 28 6 1.9612 -8.0939 0.6915 29 6 0.3816 -3.9209 1.0194 30 7 0.3494 -2.6169 1.0298 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6765 1.9564 0.8899 38 1 3.1263 -0.6442 1.2953 39 1 1.6053 -0.2616 2.1370 40 1 3.5577 -3.1339 1.4207 41 1 -0.4432 -6.8647 -0.0099 42 1 0.3103 -5.2941 -0.3949 43 1 1.7238 -6.3669 -2.0817 44 1 0.0140 -6.7057 -2.4272 45 1 3.5801 -7.1211 -1.2125 46 1 4.3711 -8.7109 -0.9520 47 1 3.7532 -9.4971 -3.0622 48 1 3.5996 -7.7638 -3.4644 49 1 3.7274 -9.5000 -6.0491 50 1 2.8697 -8.1616 1.2898 51 1 1.1601 -8.6328 1.1975 52 1 -0.4701 -4.5759 0.9090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036855408.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:30 Heat of formation + Delta-G solvation = 77.944161 kcal Electronic energy + Delta-G solvation = -31524.805547 eV Core-core repulsion = 27527.057341 eV Total energy + Delta-G solvation = -3997.748205 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.63041 -39.84462 -37.95226 -36.73142 -35.16724 -32.83522 -32.22688 -31.34309 -30.50379 -29.28065 -28.25841 -27.45368 -26.77617 -25.15173 -23.78394 -22.72102 -22.03204 -21.54607 -20.49989 -19.97139 -19.68004 -18.24204 -17.46423 -16.78985 -16.34236 -15.83085 -15.62700 -15.40392 -14.88447 -14.72883 -14.64103 -14.12951 -13.85893 -13.74762 -13.58627 -13.28320 -13.06222 -12.91472 -12.77873 -12.65768 -12.52869 -12.41218 -11.94585 -11.87295 -11.60547 -11.47841 -11.31111 -11.23558 -11.19070 -11.00271 -10.78055 -10.72302 -10.66708 -10.09385 -9.83166 -9.75505 -9.68538 -9.67721 -9.54007 -9.40534 -8.76864 -8.58211 -8.27372 -6.80644 -5.66828 -3.00326 1.49572 2.12219 2.13812 3.17261 3.41670 3.45867 3.47362 3.51731 4.06785 4.29424 4.50763 4.51923 4.59749 4.69922 4.87910 4.91249 4.99082 5.12410 5.17659 5.23858 5.32493 5.34079 5.41972 5.46476 5.50859 5.51366 5.56965 5.60952 5.68107 5.72349 5.73872 5.87482 5.91452 5.99995 6.06546 6.09314 6.14411 6.34129 6.37941 6.42849 6.48347 6.62766 6.67506 6.68469 6.87275 6.97927 7.14461 7.40217 7.59677 7.69923 7.70921 7.87745 8.28714 8.44482 9.25006 9.85163 10.53661 11.44310 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012412 B = 0.002775 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.355514 B =10086.689161 C =11317.831032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.133 3.867 5 N -0.359 5.359 6 C 0.120 3.880 7 C -0.282 4.282 8 C 0.597 3.403 9 O -0.555 6.555 10 N -0.597 5.597 11 C 0.097 3.903 12 C -0.142 4.142 13 C 0.167 3.833 14 H 0.059 0.941 15 C -0.113 4.113 16 H 0.079 0.921 17 C -0.135 4.135 18 C 0.179 3.821 19 N -0.601 5.601 20 C -0.225 4.225 21 H 0.076 0.924 22 C -0.009 4.009 23 N -0.922 5.922 24 Si 0.910 3.090 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.129 3.871 29 C 0.075 3.925 30 N -0.292 5.292 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.184 0.816 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.033 0.967 49 H 0.252 0.748 50 H 0.087 0.913 51 H 0.061 0.939 52 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.838 17.343 14.877 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.127 4.127 3 C -0.204 4.204 4 C 0.013 3.987 5 N -0.138 5.138 6 C -0.031 4.031 7 C -0.297 4.297 8 C 0.386 3.614 9 O -0.435 6.435 10 N -0.330 5.330 11 C -0.027 4.027 12 C -0.183 4.183 13 C 0.059 3.941 14 H 0.077 0.923 15 C -0.133 4.133 16 H 0.098 0.902 17 C -0.173 4.173 18 C 0.055 3.945 19 N -0.325 5.325 20 C -0.354 4.354 21 H 0.094 0.906 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.740 3.260 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 C 0.006 3.994 29 C -0.112 4.112 30 N -0.112 5.112 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.201 0.799 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.051 0.949 49 H 0.062 0.938 50 H 0.105 0.895 51 H 0.079 0.921 52 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.931 18.303 14.888 23.919 hybrid contribution 0.149 -0.971 -1.060 1.445 sum -3.781 17.333 13.827 22.492 Atomic orbital electron populations 1.22085 0.93621 1.04764 1.01128 1.21402 0.97978 0.96206 0.97126 1.21796 1.01033 0.94955 1.02577 1.21997 1.00753 0.75810 1.00170 1.48498 1.04818 1.06311 1.54209 1.22904 0.97546 0.86128 0.96514 1.20223 0.93837 0.93856 1.21755 1.17197 0.82167 0.83380 0.78650 1.90741 1.26175 1.82954 1.43584 1.47838 1.34587 1.06895 1.43633 1.22116 0.88632 1.01323 0.90609 1.22378 1.02213 0.99461 0.94256 1.21145 0.94097 0.92207 0.86629 0.92266 1.21874 0.97792 1.00123 0.93545 0.90223 1.22750 0.95891 0.99732 0.98934 1.21190 0.84693 0.99842 0.88798 1.44931 1.01840 1.79007 1.06762 1.18994 0.91046 1.37950 0.87380 0.90592 1.24788 0.95643 1.02104 0.97991 1.69963 1.03907 1.54850 1.28198 0.86234 0.78133 0.78481 0.83103 1.21284 1.21714 1.21238 1.20949 1.01153 0.79832 0.97447 1.24283 0.97091 0.92341 0.97461 1.77030 0.98423 1.11303 1.24476 0.89221 0.93022 0.93049 0.90478 0.92399 0.91808 0.92304 0.88357 0.89380 0.79899 0.91501 0.89350 0.91691 0.91457 0.92736 0.92490 0.93229 0.94889 0.93812 0.89465 0.92057 0.78963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 8.91 37.16 0.33 -0.96 16 2 C -0.11 -0.75 3.12 -90.62 -0.28 -1.03 16 3 C -0.15 -0.74 9.19 37.16 0.34 -0.40 16 4 C 0.13 0.89 5.94 -4.04 -0.02 0.87 16 5 N -0.36 -3.59 3.65 -60.81 -0.22 -3.81 16 6 C 0.12 1.32 11.37 -16.56 -0.19 1.14 16 7 C -0.28 -3.65 5.57 -105.06 -0.58 -4.23 16 8 C 0.60 9.26 7.64 -12.52 -0.10 9.16 16 9 O -0.56 -10.23 16.50 5.28 0.09 -10.15 16 10 N -0.60 -8.74 2.80 -175.93 -0.49 -9.24 16 11 C 0.10 1.27 5.44 -4.06 -0.02 1.25 16 12 C -0.14 -2.45 5.20 -27.06 -0.14 -2.59 16 13 C 0.17 3.24 3.60 -66.19 -0.24 3.00 16 14 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 15 C -0.11 -1.98 2.89 -90.54 -0.26 -2.24 16 16 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 17 C -0.13 -2.66 5.89 -25.20 -0.15 -2.80 16 18 C 0.18 4.40 5.12 -2.75 -0.01 4.39 16 19 N -0.60 -14.89 2.90 -161.78 -0.47 -15.36 16 20 C -0.23 -6.15 10.31 -15.06 -0.16 -6.30 16 21 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 23 N -0.92 -27.21 10.35 55.49 0.57 -26.64 16 24 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 C 0.13 1.93 5.85 -4.96 -0.03 1.90 16 29 C 0.07 0.85 9.62 -16.98 -0.16 0.69 16 30 N -0.29 -3.33 9.53 30.86 0.29 -3.03 16 31 H 0.09 0.91 5.35 -51.93 -0.28 0.63 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.10 0.44 8.06 -51.93 -0.42 0.02 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.18 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.05 4.05 -51.93 -0.21 0.84 16 43 H 0.06 1.29 6.97 -51.93 -0.36 0.93 16 44 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 45 H 0.05 1.09 7.43 -51.93 -0.39 0.71 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.05 1.36 7.24 -51.93 -0.38 0.98 16 48 H 0.03 0.90 7.67 -51.92 -0.40 0.51 16 49 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 50 H 0.09 1.38 7.03 -51.93 -0.36 1.02 16 51 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 52 H 0.19 1.76 6.51 -52.49 -0.34 1.42 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -33.33 398.09 -9.62 -42.95 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -8.60 Total: 0.75 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -1.77 Total: 1.48 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.31 Total: -58.08 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.33 -9.62 -42.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036855408.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.894 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds