Wall clock time and date at job start Wed Apr 1 2020 04:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47130 * 2 1 4 4 C 1.52998 * 109.47219 * 119.99729 * 2 1 3 5 5 N 1.46504 * 109.47185 * 174.99965 * 4 2 1 6 6 C 1.34257 * 125.75057 * 125.00315 * 5 4 2 7 7 C 1.38042 * 107.41384 * 180.02562 * 6 5 4 8 8 C 1.47435 * 126.41409 * 179.97438 * 7 6 5 9 9 O 1.21604 * 119.99501 * 30.39575 * 8 7 6 10 10 N 1.34776 * 120.00094 * 210.38974 * 8 7 6 11 11 C 1.46816 * 120.30421 * 177.36953 * 10 8 7 12 12 C 1.52961 * 107.39684 * 235.04189 * 11 10 8 13 13 C 1.53545 * 109.95677 * 298.41106 * 12 11 10 14 14 H 1.08994 * 110.97870 * 289.23613 * 13 12 11 15 15 C 1.51780 * 112.12350 * 53.07166 * 13 12 11 16 16 H 1.08994 * 104.98651 * 206.70535 * 15 13 12 17 17 C 1.53377 * 105.83619 * 95.17735 * 15 13 12 18 18 C 1.54473 * 102.54007 * 29.49660 * 17 15 13 19 19 N 1.46868 * 106.65508 * 332.25694 * 18 17 15 20 20 C 1.36936 * 125.34040 * 195.41052 * 19 18 17 21 21 H 1.07995 * 120.00528 * 180.02562 * 20 19 18 22 22 C 1.38816 * 119.99428 * 0.02562 * 20 19 18 23 23 N 1.31618 * 120.00434 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99633 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46816 * 60.00398 * 24 22 20 26 26 H 1.48496 * 109.47042 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47256 * 300.00178 * 24 22 20 28 28 C 1.45649 * 120.30297 * 357.40250 * 10 8 7 29 29 C 1.41292 * 107.17001 * 0.24078 * 7 6 5 30 30 N 1.30446 * 108.02509 * 359.58850 * 29 7 6 31 31 H 1.08999 * 109.47315 * 300.00406 * 1 2 3 32 32 H 1.09003 * 109.47043 * 60.00174 * 1 2 3 33 33 H 1.09008 * 109.47307 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47138 * 240.00050 * 2 1 3 35 35 H 1.08999 * 109.47353 * 59.99617 * 3 2 1 36 36 H 1.08999 * 109.47167 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.47016 * 299.99843 * 3 2 1 38 38 H 1.09000 * 109.47127 * 55.00426 * 4 2 1 39 39 H 1.08997 * 109.47223 * 295.00258 * 4 2 1 40 40 H 1.07994 * 126.29306 * 0.02562 * 6 5 4 41 41 H 1.09001 * 109.87370 * 354.51890 * 11 10 8 42 42 H 1.09005 * 109.87416 * 115.50092 * 11 10 8 43 43 H 1.08998 * 109.38336 * 58.68506 * 12 11 10 44 44 H 1.09000 * 109.38863 * 178.46730 * 12 11 10 45 45 H 1.08989 * 110.80093 * 271.23336 * 17 15 13 46 46 H 1.09008 * 110.79206 * 147.75001 * 17 15 13 47 47 H 1.09002 * 110.02299 * 212.96365 * 18 17 15 48 48 H 1.08998 * 110.02711 * 91.55883 * 18 17 15 49 49 H 0.96998 * 119.99909 * 180.02562 * 23 22 20 50 50 H 1.09001 * 108.44473 * 22.14910 * 28 10 8 51 51 H 1.09005 * 108.30910 * 264.74929 * 28 10 8 52 52 H 1.08005 * 125.98259 * 179.74071 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.3559 -0.3963 2.1313 7 6 5.6323 -0.6836 1.6911 8 6 6.8901 -0.3895 2.4018 9 8 6.9124 -0.3749 3.6175 10 7 8.0152 -0.1370 1.7040 11 6 9.2578 0.2131 2.4033 12 6 9.7451 1.5451 1.8306 13 6 10.0421 1.3939 0.3317 14 1 10.9342 0.7889 0.1698 15 6 8.8651 0.8099 -0.4281 16 1 9.3060 0.3125 -1.2919 17 6 8.0928 2.0100 -0.9901 18 6 9.2055 3.0638 -1.1842 19 7 10.2488 2.7613 -0.1957 20 6 11.2580 3.6091 0.1754 21 1 11.9819 3.2966 0.9134 22 6 11.3505 4.8704 -0.3969 23 7 10.4679 5.2516 -1.2958 24 14 12.7268 6.0273 0.1100 25 1 14.0379 5.3991 -0.1924 26 1 12.6041 7.3020 -0.6420 27 1 12.6328 6.3003 1.5666 28 6 8.0094 -0.2084 0.2493 29 6 5.5078 -1.3067 0.4291 30 7 4.2377 -1.3914 0.1443 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1299 1.4425 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6054 -1.7198 1.2952 39 1 1.7516 -0.1583 2.1369 40 1 4.0939 0.0859 3.0615 41 1 9.0653 0.3171 3.4711 42 1 10.0078 -0.5600 2.2357 43 1 8.9757 2.3038 1.9742 44 1 10.6548 1.8502 2.3477 45 1 7.3484 2.3605 -0.2753 46 1 7.6274 1.7587 -1.9433 47 1 8.8068 4.0636 -1.0118 48 1 9.6146 2.9935 -2.1920 49 1 10.5328 6.1328 -1.6960 50 1 6.9838 -0.0830 -0.0980 51 1 8.3534 -1.1996 -0.0464 52 1 6.3217 -1.6543 -0.1900 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036855410.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:40 Heat of formation + Delta-G solvation = 74.046527 kcal Electronic energy + Delta-G solvation = -31631.422544 eV Core-core repulsion = 27633.505324 eV Total energy + Delta-G solvation = -3997.917220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.63812 -39.82724 -38.05040 -36.78639 -35.23259 -32.76134 -32.60245 -31.66574 -30.34824 -29.41515 -28.23663 -27.56971 -26.81065 -25.20694 -23.79152 -22.96901 -21.99498 -21.44117 -20.39585 -20.20377 -19.58951 -18.25426 -17.33949 -16.85389 -16.36719 -16.08911 -15.67601 -15.20575 -14.93158 -14.75566 -14.69116 -14.46650 -13.86982 -13.74682 -13.55989 -13.32595 -13.07493 -12.96436 -12.73588 -12.71603 -12.41740 -12.35305 -12.19859 -11.78294 -11.61194 -11.43462 -11.40480 -11.35190 -11.28845 -10.94659 -10.87378 -10.80005 -10.67725 -10.12583 -10.02148 -9.90993 -9.68181 -9.58814 -9.50787 -9.42640 -8.74446 -8.59180 -8.29551 -6.81063 -5.65549 -3.02663 1.50013 2.14444 2.16364 3.16550 3.41955 3.46257 3.47226 3.50678 4.03758 4.34843 4.49225 4.50185 4.57973 4.68130 4.81559 4.92172 4.95265 5.02401 5.14788 5.23978 5.25171 5.30244 5.33235 5.44262 5.45519 5.48722 5.50604 5.55380 5.67712 5.69125 5.78152 5.86591 5.88823 5.93012 5.98009 6.01415 6.10944 6.27506 6.30764 6.38474 6.46950 6.60416 6.66749 6.69468 6.81346 6.99330 7.15286 7.41620 7.56647 7.67060 7.67993 7.87573 8.33844 8.42523 9.25281 9.85448 10.50148 11.41884 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.002793 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.355017 B =10023.723104 C =11116.833805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.150 4.150 4 C 0.134 3.866 5 N -0.358 5.358 6 C 0.121 3.879 7 C -0.284 4.284 8 C 0.594 3.406 9 O -0.556 6.556 10 N -0.594 5.594 11 C 0.113 3.887 12 C -0.137 4.137 13 C 0.172 3.828 14 H 0.041 0.959 15 C -0.108 4.108 16 H 0.064 0.936 17 C -0.134 4.134 18 C 0.167 3.833 19 N -0.600 5.600 20 C -0.221 4.221 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.923 5.923 24 Si 0.911 3.089 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.120 3.880 29 C 0.074 3.926 30 N -0.294 5.294 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.183 0.817 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.082 0.918 48 H 0.017 0.983 49 H 0.251 0.749 50 H 0.088 0.912 51 H 0.057 0.943 52 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.211 -13.593 2.797 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.207 4.207 4 C 0.013 3.987 5 N -0.137 5.137 6 C -0.030 4.030 7 C -0.299 4.299 8 C 0.383 3.617 9 O -0.435 6.435 10 N -0.326 5.326 11 C -0.010 4.010 12 C -0.177 4.177 13 C 0.065 3.935 14 H 0.059 0.941 15 C -0.128 4.128 16 H 0.083 0.917 17 C -0.173 4.173 18 C 0.042 3.958 19 N -0.324 5.324 20 C -0.350 4.350 21 H 0.094 0.906 22 C -0.206 4.206 23 N -0.571 5.571 24 Si 0.742 3.258 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.003 4.003 29 C -0.113 4.113 30 N -0.114 5.114 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.200 0.800 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.100 0.900 48 H 0.035 0.965 49 H 0.062 0.938 50 H 0.106 0.894 51 H 0.075 0.925 52 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -19.129 -13.731 2.477 23.677 hybrid contribution 1.456 0.993 0.632 1.872 sum -17.673 -12.738 3.109 22.006 Atomic orbital electron populations 1.21790 0.93841 1.02148 1.02568 1.21429 0.96206 0.97110 0.98061 1.21848 1.01687 0.94991 1.02159 1.21975 0.74010 1.02364 1.00321 1.48497 1.06783 1.44277 1.14130 1.22869 0.88898 0.96552 0.94699 1.20227 0.93570 1.16924 0.99188 1.17260 0.82171 0.76066 0.86178 1.90737 1.85490 1.53905 1.13403 1.47528 1.10028 1.68238 1.06796 1.21678 0.84326 0.97329 0.97658 1.22477 1.01536 0.95339 0.98374 1.20562 0.93669 0.88042 0.91211 0.94126 1.20728 0.96700 0.96465 0.98893 0.91714 1.22662 0.99134 0.96446 0.99041 1.21373 0.86182 0.96612 0.91586 1.44703 1.30861 1.10266 1.46611 1.18973 1.03344 0.93982 1.18653 0.90560 1.24777 0.99048 0.97721 0.99041 1.69915 1.36348 1.19882 1.30957 0.86205 0.81499 0.80311 0.77796 1.21264 1.21686 1.21195 1.20945 1.01603 0.98108 0.79680 1.24362 0.94526 0.97611 0.94763 1.77137 1.04228 1.20019 1.10054 0.92345 0.91781 0.92314 0.89386 0.92589 0.92401 0.92064 0.89403 0.88392 0.79964 0.89428 0.91769 0.91469 0.91317 0.92664 0.92214 0.89985 0.96488 0.93812 0.89368 0.92507 0.78918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.19 37.15 0.34 -0.36 16 2 C -0.11 -0.74 3.00 -90.62 -0.27 -1.01 16 3 C -0.15 -1.19 9.08 37.16 0.34 -0.85 16 4 C 0.13 0.89 5.88 -4.04 -0.02 0.86 16 5 N -0.36 -3.59 3.10 -60.81 -0.19 -3.78 16 6 C 0.12 1.34 11.37 -16.56 -0.19 1.15 16 7 C -0.28 -3.74 5.57 -105.06 -0.58 -4.32 16 8 C 0.59 9.38 7.62 -12.52 -0.10 9.28 16 9 O -0.56 -10.35 16.42 5.27 0.09 -10.26 16 10 N -0.59 -8.98 3.00 -177.60 -0.53 -9.51 16 11 C 0.11 1.76 6.42 -3.89 -0.02 1.74 16 12 C -0.14 -2.54 5.19 -26.47 -0.14 -2.67 16 13 C 0.17 3.40 3.43 -67.43 -0.23 3.17 16 14 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.11 -1.78 2.45 -92.88 -0.23 -2.01 16 16 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 17 C -0.13 -2.46 6.37 -25.76 -0.16 -2.63 16 18 C 0.17 4.00 5.54 -3.07 -0.02 3.99 16 19 N -0.60 -14.84 3.04 -163.70 -0.50 -15.33 16 20 C -0.22 -6.02 9.83 -15.06 -0.15 -6.17 16 21 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 22 C -0.01 -0.28 5.48 -17.43 -0.10 -0.38 16 23 N -0.92 -26.89 10.22 55.49 0.57 -26.32 16 24 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.12 1.62 4.60 -6.34 -0.03 1.59 16 29 C 0.07 0.87 9.59 -16.98 -0.16 0.71 16 30 N -0.29 -3.48 12.24 30.86 0.38 -3.10 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.24 8.14 -51.92 -0.42 -0.18 16 34 H 0.09 0.74 8.04 -51.93 -0.42 0.32 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.44 8.06 -51.93 -0.42 0.03 16 40 H 0.18 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 44 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 45 H 0.05 1.03 8.14 -51.94 -0.42 0.61 16 46 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 47 H 0.08 2.23 6.41 -51.93 -0.33 1.90 16 48 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 49 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 50 H 0.09 1.11 4.15 -51.93 -0.22 0.90 16 51 H 0.06 0.63 7.82 -51.93 -0.41 0.23 16 52 H 0.19 1.86 6.00 -52.48 -0.31 1.55 16 LS Contribution 402.78 15.07 6.07 6.07 Total: -1.00 -33.12 402.78 -9.62 -42.74 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.75 Total: 0.35 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.72 Total: 2.08 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.27 Total: -58.05 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.12 -9.62 -42.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036855410.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.783 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds