Wall clock time and date at job start Wed Apr 1 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47054 * 2 1 4 4 H 1.08997 * 109.49937 * 305.06882 * 3 2 1 5 5 C 1.53193 * 109.52173 * 65.15338 * 3 2 1 6 6 N 1.46930 * 108.77473 * 174.60007 * 5 3 2 7 7 C 1.34779 * 120.63138 * 126.36465 * 6 5 3 8 8 O 1.21632 * 119.99653 * 351.42749 * 7 6 5 9 9 C 1.47154 * 119.99760 * 171.42749 * 7 6 5 10 10 C 1.38407 * 126.88702 * 332.70506 * 9 7 6 11 11 C 1.39675 * 105.36052 * 180.02562 * 10 9 7 12 12 N 1.30871 * 107.86306 * 0.02562 * 11 10 9 13 13 N 1.28450 * 110.92197 * 359.71240 * 12 11 10 14 14 C 1.46498 * 125.18810 * 180.28173 * 13 12 11 15 15 C 1.53782 * 113.61468 * 31.70592 * 14 13 12 16 16 C 1.53951 * 87.02132 * 220.05022 * 15 14 13 17 17 C 1.53779 * 113.61192 * 294.10257 * 14 13 12 18 18 C 1.46923 * 118.73676 * 306.38988 * 6 5 3 19 19 C 1.53188 * 108.77882 * 53.60740 * 18 6 5 20 20 C 1.53042 * 109.31397 * 305.36702 * 19 18 6 21 21 H 1.08999 * 109.45150 * 181.37882 * 20 19 18 22 22 N 1.46508 * 109.45686 * 301.34473 * 20 19 18 23 23 C 1.36933 * 119.99845 * 275.06660 * 22 20 19 24 24 H 1.08005 * 119.99996 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00172 * 180.02562 * 23 22 20 26 26 N 1.31624 * 120.00186 * 179.97438 * 25 23 22 27 27 Si 1.86797 * 119.99770 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.47146 * 90.00299 * 27 25 23 29 29 H 1.48499 * 109.47327 * 330.00432 * 27 25 23 30 30 H 1.48502 * 109.47275 * 210.00420 * 27 25 23 31 31 H 1.09003 * 109.47845 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47361 * 299.99820 * 1 2 3 33 33 H 1.08997 * 109.47348 * 59.99186 * 1 2 3 34 34 H 1.09004 * 109.46636 * 240.00276 * 2 1 3 35 35 H 1.08997 * 109.47348 * 120.00814 * 2 1 3 36 36 H 1.09003 * 109.58165 * 294.38315 * 5 3 2 37 37 H 1.08994 * 109.59044 * 54.66479 * 5 3 2 38 38 H 1.08000 * 127.32179 * 0.02900 * 10 9 7 39 39 H 1.07997 * 126.07012 * 179.97438 * 11 10 9 40 40 H 1.08998 * 112.85432 * 162.90374 * 14 13 12 41 41 H 1.08996 * 113.61835 * 334.57168 * 15 14 13 42 42 H 1.09005 * 113.61410 * 105.47411 * 15 14 13 43 43 H 1.09004 * 113.54071 * 270.81393 * 16 15 14 44 44 H 1.08996 * 113.74483 * 139.94635 * 16 15 14 45 45 H 1.09008 * 113.61508 * 254.52994 * 17 14 13 46 46 H 1.09000 * 113.61819 * 25.34593 * 17 14 13 47 47 H 1.09001 * 109.58684 * 173.40177 * 18 6 5 48 48 H 1.09004 * 109.58532 * 293.67722 * 18 6 5 49 49 H 1.08997 * 109.49936 * 185.41667 * 19 18 6 50 50 H 1.09000 * 109.49820 * 65.31385 * 19 18 6 51 51 H 0.96994 * 119.99884 * 95.06981 * 22 20 19 52 52 H 0.97003 * 119.99679 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 -0.8409 5 6 1.6386 2.1274 1.3102 6 7 2.2451 3.4650 1.3497 7 6 1.4857 4.5573 1.5657 8 8 0.2731 4.4627 1.5748 9 6 2.1236 5.8642 1.7905 10 6 3.3808 6.0947 2.3214 11 6 3.5285 7.4835 2.3335 12 7 2.4335 8.0079 1.8449 13 7 1.5952 7.0929 1.5129 14 6 0.2729 7.3310 0.9291 15 6 0.2063 8.5891 0.0472 16 6 -1.1787 8.8518 0.6660 17 6 -0.7027 8.0407 1.8827 18 6 3.6952 3.5894 1.1487 19 6 4.0736 2.8881 -0.1596 20 6 3.5652 1.4450 -0.1258 21 1 3.8546 0.9365 -1.0455 22 7 4.1508 0.7480 1.0222 23 6 5.3886 0.1723 0.9150 24 1 5.9330 0.2316 -0.0159 25 6 5.9432 -0.4885 2.0025 26 7 7.1328 -1.0423 1.8993 27 14 5.0013 -0.5917 3.6123 28 1 4.1585 -1.8144 3.6151 29 1 4.1358 0.6063 3.7571 30 1 5.9606 -0.6491 4.7443 31 1 -0.3635 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8932 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 0.5533 2.2167 1.3582 37 1 1.9943 1.5374 2.1548 38 1 4.0958 5.3573 2.6554 39 1 4.3925 8.0281 2.6845 40 1 -0.1471 6.4434 0.4560 41 1 0.9499 9.3431 0.3052 42 1 0.1745 8.3725 -1.0207 43 1 -1.9960 8.3806 0.1198 44 1 -1.3681 9.9019 0.8882 45 1 -1.4674 7.3821 2.2947 46 1 -0.2081 8.6434 2.6445 47 1 3.9670 4.6433 1.0903 48 1 4.2209 3.1221 1.9815 49 1 5.1577 2.8892 -0.2727 50 1 3.6192 3.4142 -0.9991 51 1 3.6616 0.6944 1.8580 52 1 7.5204 -1.5038 2.6594 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037842628.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:07 Heat of formation + Delta-G solvation = 84.401631 kcal Electronic energy + Delta-G solvation = -32233.405716 eV Core-core repulsion = 28235.937527 eV Total energy + Delta-G solvation = -3997.468189 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.72017 -40.06208 -38.73272 -37.92614 -34.76965 -33.91131 -31.95120 -31.79217 -31.14587 -29.88393 -28.66293 -26.06934 -26.01835 -25.37055 -24.04825 -23.30696 -22.40955 -21.89267 -20.88603 -20.26810 -19.19375 -18.65694 -17.92872 -17.29383 -16.65344 -16.12572 -15.83776 -15.64355 -15.14928 -14.73430 -14.56903 -14.42575 -13.98940 -13.91163 -13.61169 -13.43901 -13.30971 -13.13387 -13.03218 -12.87296 -12.55563 -12.51901 -12.46334 -11.93071 -11.68570 -11.55863 -11.32204 -11.19066 -11.02999 -10.97790 -10.94994 -10.87314 -10.63375 -10.42925 -10.39267 -10.25011 -9.95637 -9.85390 -9.59066 -9.23121 -9.04350 -8.90256 -8.44456 -7.31734 -5.81914 -3.17417 1.26106 2.22380 2.54336 3.04781 3.13806 3.30945 3.34163 3.41448 4.00964 4.16106 4.36578 4.41839 4.47013 4.53329 4.73108 4.95276 5.02714 5.04965 5.17645 5.23910 5.29141 5.32751 5.38508 5.39907 5.46407 5.49408 5.52592 5.52856 5.57560 5.59419 5.62265 5.64269 5.71600 5.74000 5.85062 5.98132 6.00517 6.02414 6.13513 6.22358 6.28716 6.38353 6.42678 6.47713 6.53377 6.63023 6.67933 6.71771 6.83531 7.42427 7.94203 7.96897 8.10715 8.37096 9.15063 9.87628 10.07324 11.36480 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.003352 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.023501 B = 8351.928941 C = 9392.886738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.119 3.881 6 N -0.586 5.586 7 C 0.588 3.412 8 O -0.551 6.551 9 C -0.030 4.030 10 C -0.192 4.192 11 C -0.004 4.004 12 N -0.280 5.280 13 N -0.249 5.249 14 C 0.121 3.879 15 C -0.139 4.139 16 C -0.137 4.137 17 C -0.139 4.139 18 C 0.095 3.905 19 C -0.149 4.149 20 C 0.184 3.816 21 H 0.061 0.939 22 N -0.743 5.743 23 C -0.240 4.240 24 H 0.091 0.909 25 C 0.007 3.993 26 N -0.933 5.933 27 Si 0.878 3.122 28 H -0.284 1.284 29 H -0.279 1.279 30 H -0.291 1.291 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.167 0.833 39 H 0.186 0.814 40 H 0.136 0.864 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.051 0.949 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.235 16.853 -3.079 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.091 0.909 5 C -0.003 4.003 6 N -0.317 5.317 7 C 0.375 3.625 8 O -0.430 6.430 9 C -0.159 4.159 10 C -0.221 4.221 11 C -0.180 4.180 12 N -0.112 5.112 13 N -0.036 5.036 14 C 0.020 3.980 15 C -0.177 4.177 16 C -0.175 4.175 17 C -0.178 4.178 18 C -0.027 4.027 19 C -0.190 4.190 20 C 0.074 3.926 21 H 0.079 0.921 22 N -0.387 5.387 23 C -0.370 4.370 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.580 5.580 27 Si 0.708 3.292 28 H -0.211 1.211 29 H -0.205 1.205 30 H -0.218 1.218 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.184 0.816 39 H 0.203 0.797 40 H 0.154 0.846 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.110 0.890 47 H 0.110 0.890 48 H 0.100 0.900 49 H 0.100 0.900 50 H 0.070 0.930 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.277 17.722 -3.470 23.654 hybrid contribution 0.132 -1.034 1.568 1.882 sum -15.146 16.688 -1.903 22.616 Atomic orbital electron populations 1.21861 0.96597 1.01220 1.01470 1.21432 0.94493 0.95584 1.03400 1.21805 0.97554 0.96233 0.97011 0.90923 1.21755 0.99133 0.81045 0.98368 1.47844 1.09203 1.05931 1.68709 1.16964 0.85968 0.82495 0.77119 1.90757 1.13323 1.85861 1.53052 1.21454 0.96183 0.88088 1.10161 1.22510 0.95800 0.97309 1.06454 1.23585 0.97201 0.92911 1.04325 1.73051 1.01309 1.19706 1.17090 1.45732 1.13651 1.01722 1.42487 1.23506 0.77789 1.00321 0.96363 1.23360 0.98409 0.96581 0.99366 1.22731 0.96670 1.01156 0.96929 1.23324 0.98192 0.98831 0.97405 1.22309 0.78445 1.02011 0.99934 1.22498 1.02405 0.98627 0.95422 1.20203 0.89307 0.90775 0.92296 0.92108 1.42835 1.19766 1.65833 1.10261 1.19043 0.92123 1.26647 0.99196 0.89155 1.24632 0.96453 1.00282 0.97495 1.69691 1.16280 1.41190 1.30887 0.86677 0.79431 0.77807 0.85268 1.21073 1.20499 1.21750 0.92992 0.92882 0.93106 0.91391 0.91110 0.89091 0.91227 0.81577 0.79694 0.84638 0.87983 0.90443 0.89453 0.90193 0.90097 0.89044 0.89009 0.89950 0.90010 0.93032 0.80633 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.67 37.16 0.36 -1.51 16 2 C -0.11 -1.59 5.19 -26.73 -0.14 -1.73 16 3 C -0.11 -1.57 2.13 -90.50 -0.19 -1.76 16 4 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 5 C 0.12 1.82 5.04 -3.71 -0.02 1.80 16 6 N -0.59 -8.92 2.97 -174.14 -0.52 -9.44 16 7 C 0.59 9.21 7.46 -12.64 -0.09 9.11 16 8 O -0.55 -9.50 14.75 5.25 0.08 -9.43 16 9 C -0.03 -0.44 6.40 -82.06 -0.52 -0.96 16 10 C -0.19 -2.44 8.60 -38.98 -0.34 -2.78 16 11 C 0.00 -0.05 12.03 -17.42 -0.21 -0.26 16 12 N -0.28 -3.61 11.06 30.59 0.34 -3.27 16 13 N -0.25 -3.29 3.48 -49.91 -0.17 -3.47 16 14 C 0.12 1.35 4.18 -67.12 -0.28 1.07 16 15 C -0.14 -1.21 7.70 -25.83 -0.20 -1.41 16 16 C -0.14 -0.99 8.09 -25.83 -0.21 -1.20 16 17 C -0.14 -1.32 7.88 -25.92 -0.20 -1.53 16 18 C 0.09 1.41 4.91 -3.71 -0.02 1.39 16 19 C -0.15 -2.32 5.78 -26.61 -0.15 -2.47 16 20 C 0.18 3.17 2.53 -67.88 -0.17 3.00 16 21 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 22 N -0.74 -15.64 3.53 -53.38 -0.19 -15.83 16 23 C -0.24 -6.21 10.41 -15.06 -0.16 -6.37 16 24 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 25 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 26 N -0.93 -28.14 13.97 55.49 0.78 -27.36 16 27 Si 0.88 21.16 27.73 -169.99 -4.71 16.44 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 30 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.15 7.70 -51.93 -0.40 0.75 16 36 H 0.09 1.38 5.73 -51.93 -0.30 1.08 16 37 H 0.07 1.15 6.64 -51.93 -0.35 0.80 16 38 H 0.17 1.94 6.48 -52.49 -0.34 1.60 16 39 H 0.19 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.14 1.64 6.67 -51.93 -0.35 1.29 16 41 H 0.10 0.97 7.55 -51.93 -0.39 0.57 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.09 1.22 4.31 -51.93 -0.22 1.00 16 48 H 0.08 1.38 7.74 -51.93 -0.40 0.98 16 49 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 50 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.36 7.62 3.81 -40.82 -0.16 7.47 16 52 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 397.14 15.07 5.98 5.98 Total: -1.00 -30.81 397.14 -9.40 -40.20 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -8.33 Total: 11.66 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -2.64 Total: -5.50 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.23 Total: -59.37 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.44 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.81 -9.40 -40.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037842628.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.605 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds