Wall clock time and date at job start Wed Apr 1 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47385 * 2 1 4 4 H 1.09004 * 109.52529 * 54.91696 * 3 2 1 5 5 C 1.53194 * 109.49804 * 294.83961 * 3 2 1 6 6 N 1.46927 * 108.77784 * 185.41297 * 5 3 2 7 7 C 1.34780 * 120.62767 * 233.58974 * 6 5 3 8 8 O 1.21626 * 120.00647 * 0.56653 * 7 6 5 9 9 C 1.47163 * 119.99556 * 180.57015 * 7 6 5 10 10 C 1.38406 * 126.88830 * 25.56857 * 9 7 6 11 11 C 1.39674 * 105.36269 * 179.97438 * 10 9 7 12 12 N 1.30865 * 107.86154 * 0.02562 * 11 10 9 13 13 N 1.28446 * 110.92390 * 359.71209 * 12 11 10 14 14 C 1.46504 * 125.18812 * 180.28027 * 13 12 11 15 15 C 1.53777 * 113.61257 * 44.63766 * 14 13 12 16 16 C 1.53779 * 87.08260 * 220.01685 * 15 14 13 17 17 C 1.53773 * 113.61600 * 307.14116 * 14 13 12 18 18 C 1.46921 * 118.73928 * 53.60343 * 6 5 3 19 19 C 1.53157 * 108.77030 * 306.39601 * 18 6 5 20 20 C 1.53039 * 109.33129 * 54.64274 * 19 18 6 21 21 H 1.08993 * 109.46431 * 178.61361 * 20 19 18 22 22 N 1.46500 * 109.45769 * 58.63920 * 20 19 18 23 23 C 1.36935 * 120.00017 * 84.97884 * 22 20 19 24 24 H 1.08002 * 119.99640 * 359.97438 * 23 22 20 25 25 C 1.38814 * 120.00455 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99395 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00068 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46904 * 269.99764 * 27 25 23 29 29 H 1.48493 * 109.47254 * 29.99910 * 27 25 23 30 30 H 1.48499 * 109.47068 * 149.99979 * 27 25 23 31 31 H 1.08993 * 109.47062 * 300.00258 * 1 2 3 32 32 H 1.09001 * 109.46936 * 59.99778 * 1 2 3 33 33 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46902 * 239.99788 * 2 1 3 35 35 H 1.09001 * 109.46936 * 120.00222 * 2 1 3 36 36 H 1.09004 * 109.58596 * 305.19853 * 5 3 2 37 37 H 1.08997 * 109.58922 * 65.48201 * 5 3 2 38 38 H 1.08003 * 127.31624 * 0.02562 * 10 9 7 39 39 H 1.07995 * 126.07132 * 180.02562 * 11 10 9 40 40 H 1.09001 * 112.84785 * 175.93852 * 14 13 12 41 41 H 1.08994 * 113.61777 * 334.56346 * 15 14 13 42 42 H 1.09001 * 113.61631 * 105.47184 * 15 14 13 43 43 H 1.09003 * 113.61423 * 270.89087 * 16 15 14 44 44 H 1.08994 * 113.69424 * 139.99198 * 16 15 14 45 45 H 1.09005 * 113.61332 * 254.52860 * 17 14 13 46 46 H 1.09003 * 113.61488 * 25.34566 * 17 14 13 47 47 H 1.09004 * 109.58326 * 66.18456 * 18 6 5 48 48 H 1.09005 * 109.58999 * 186.46353 * 18 6 5 49 49 H 1.08998 * 109.50418 * 294.67797 * 19 18 6 50 50 H 1.08999 * 109.48187 * 174.59581 * 19 18 6 51 51 H 0.96993 * 120.00236 * 264.97408 * 22 20 19 52 52 H 0.97003 * 119.99709 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9827 0.8407 5 6 1.6386 2.1267 -1.3105 6 7 2.2452 3.4643 -1.3507 7 6 1.4858 4.5564 -1.5681 8 8 0.2850 4.4412 -1.7230 9 6 2.1098 5.8883 -1.6181 10 6 3.4213 6.1793 -1.9508 11 6 3.5279 7.5687 -1.8546 12 7 2.3607 8.0366 -1.4924 13 7 1.5090 7.0856 -1.3510 14 6 0.1079 7.2584 -0.9593 15 6 -0.5993 8.4100 -1.6931 16 6 -1.2780 8.7421 -0.3537 17 6 -0.0748 8.0735 0.3318 18 6 3.6953 3.5887 -1.1498 19 6 4.0734 2.8882 0.1586 20 6 3.5653 1.4450 0.1257 21 1 3.8547 0.9370 1.0456 22 7 4.1508 0.7475 -1.0219 23 6 5.3883 0.1712 -0.9144 24 1 5.9329 0.2313 0.0164 25 6 5.9429 -0.4901 -2.0015 26 7 5.2789 -0.5638 -3.1356 27 14 7.6314 -1.2755 -1.8550 28 1 8.6716 -0.2884 -2.2409 29 1 7.8558 -1.7085 -0.4524 30 1 7.7090 -2.4540 -2.7552 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.9966 1.5376 -2.1549 37 1 0.5532 2.2138 -1.3597 38 1 4.1972 5.4807 -2.2270 39 1 4.4159 8.1530 -2.0453 40 1 -0.4525 6.3236 -0.9685 41 1 0.0799 9.1874 -2.0428 42 1 -1.2941 8.0755 -2.4635 43 1 -2.2185 8.2135 -0.1979 44 1 -1.3553 9.8110 -0.1550 45 1 -0.3460 7.4673 1.1962 46 1 0.7487 8.7578 0.5364 47 1 4.2210 3.1189 -1.9812 48 1 3.9675 4.6428 -1.0944 49 1 3.6191 3.4148 0.9978 50 1 5.1576 2.8897 0.2716 51 1 3.6618 0.6938 -1.8578 52 1 5.6663 -1.0262 -3.8952 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037842629.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:12 Heat of formation + Delta-G solvation = 88.238181 kcal Electronic energy + Delta-G solvation = -32116.715986 eV Core-core repulsion = 28119.414163 eV Total energy + Delta-G solvation = -3997.301823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.66748 -39.92233 -38.69406 -37.77646 -34.67443 -33.78494 -31.88768 -31.71027 -31.10997 -29.39819 -28.36926 -26.02360 -25.94034 -25.22979 -23.94456 -23.60382 -22.32968 -21.85754 -20.79592 -20.24575 -19.10707 -18.55734 -17.38179 -17.18757 -16.55831 -15.92466 -15.79068 -15.71353 -14.98779 -14.69947 -14.59420 -14.18843 -14.04159 -13.79080 -13.53283 -13.28654 -13.20190 -13.00136 -12.90636 -12.83276 -12.55814 -12.50720 -12.18609 -11.72861 -11.50522 -11.45186 -11.12857 -11.08003 -10.94169 -10.89651 -10.81789 -10.79106 -10.49914 -10.31265 -10.20473 -10.18903 -9.83452 -9.78875 -9.57355 -9.16235 -8.98936 -8.82494 -8.29624 -6.99549 -5.80969 -3.09404 1.33281 2.30425 2.60329 3.17274 3.26968 3.40161 3.46343 3.47598 4.07779 4.21788 4.46636 4.47077 4.54301 4.55780 4.76826 5.08437 5.10831 5.24134 5.28922 5.33355 5.37334 5.43075 5.45034 5.53190 5.55885 5.57206 5.59236 5.61122 5.65909 5.68412 5.73511 5.78811 5.82537 5.88910 6.04942 6.07172 6.12868 6.17441 6.31038 6.35462 6.39985 6.48649 6.53852 6.60005 6.69278 6.74226 6.75004 6.91521 6.96539 7.56841 7.67034 8.04944 8.22266 8.37467 9.49242 10.05510 10.40685 11.41363 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.003115 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.225796 B = 8985.326326 C =10245.091646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.066 0.934 5 C 0.120 3.880 6 N -0.579 5.579 7 C 0.586 3.414 8 O -0.556 6.556 9 C -0.027 4.027 10 C -0.200 4.200 11 C -0.005 4.005 12 N -0.281 5.281 13 N -0.248 5.248 14 C 0.113 3.887 15 C -0.138 4.138 16 C -0.136 4.136 17 C -0.143 4.143 18 C 0.080 3.920 19 C -0.148 4.148 20 C 0.178 3.822 21 H 0.051 0.949 22 N -0.718 5.718 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.283 1.283 30 H -0.293 1.293 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.175 0.825 39 H 0.185 0.815 40 H 0.147 0.853 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.047 0.953 50 H 0.075 0.925 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.214 15.475 5.970 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.002 4.002 6 N -0.309 5.309 7 C 0.373 3.627 8 O -0.436 6.436 9 C -0.155 4.155 10 C -0.228 4.228 11 C -0.181 4.181 12 N -0.113 5.113 13 N -0.035 5.035 14 C 0.013 3.987 15 C -0.176 4.176 16 C -0.174 4.174 17 C -0.181 4.181 18 C -0.042 4.042 19 C -0.189 4.189 20 C 0.067 3.933 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.209 1.209 30 H -0.219 1.219 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.192 0.808 39 H 0.202 0.798 40 H 0.164 0.836 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.114 0.886 47 H 0.106 0.894 48 H 0.119 0.881 49 H 0.066 0.934 50 H 0.094 0.906 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.386 16.299 6.217 20.831 hybrid contribution 1.558 -1.307 -0.493 2.093 sum -9.828 14.992 5.724 18.818 Atomic orbital electron populations 1.21856 0.96821 1.01080 1.01314 1.21417 0.94256 0.95645 1.03470 1.21750 0.97548 0.96155 0.96793 0.91595 1.21769 0.98831 0.80928 0.98672 1.47823 1.09119 1.05943 1.67989 1.16943 0.85776 0.82646 0.77362 1.90718 1.14197 1.86362 1.52347 1.21467 0.94181 0.88730 1.11147 1.22668 0.95371 0.96811 1.07933 1.23589 0.95973 0.93607 1.04934 1.73035 1.00435 1.18302 1.19529 1.45721 1.09703 1.01915 1.46205 1.23704 0.76037 1.01719 0.97272 1.23310 0.99338 0.97364 0.97622 1.22687 0.97388 1.01646 0.95698 1.23375 0.99365 0.99098 0.96237 1.22663 0.78650 1.02740 1.00105 1.22504 1.01872 0.99081 0.95489 1.20232 0.89618 0.90762 0.92662 0.93117 1.42467 1.19094 1.63975 1.10534 1.19205 0.93578 1.26960 0.97077 0.91275 1.24696 0.98516 1.01469 0.96042 1.69646 1.38046 1.48045 1.02277 0.86245 0.84449 0.78768 0.77032 1.21813 1.20886 1.21916 0.93402 0.92799 0.93117 0.90414 0.91947 0.90339 0.89416 0.80775 0.79757 0.83567 0.88463 0.90347 0.89437 0.90232 0.90452 0.88642 0.89379 0.88075 0.93445 0.90604 0.78120 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.68 37.16 0.36 -1.66 16 2 C -0.11 -1.70 5.19 -26.73 -0.14 -1.84 16 3 C -0.10 -1.62 2.14 -90.50 -0.19 -1.82 16 4 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 5 C 0.12 1.97 5.03 -3.71 -0.02 1.95 16 6 N -0.58 -9.33 2.97 -174.15 -0.52 -9.84 16 7 C 0.59 9.68 7.57 -12.64 -0.10 9.58 16 8 O -0.56 -10.08 14.32 5.25 0.08 -10.01 16 9 C -0.03 -0.40 6.59 -82.06 -0.54 -0.94 16 10 C -0.20 -2.62 8.71 -38.98 -0.34 -2.96 16 11 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 12 N -0.28 -3.75 11.13 30.59 0.34 -3.41 16 13 N -0.25 -3.43 3.46 -49.91 -0.17 -3.60 16 14 C 0.11 1.33 4.45 -67.12 -0.30 1.04 16 15 C -0.14 -1.33 7.75 -25.92 -0.20 -1.53 16 16 C -0.14 -1.03 8.08 -25.92 -0.21 -1.24 16 17 C -0.14 -1.34 7.79 -25.92 -0.20 -1.54 16 18 C 0.08 1.25 5.21 -3.73 -0.02 1.23 16 19 C -0.15 -2.40 5.78 -26.63 -0.15 -2.56 16 20 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -16.00 3.72 -53.39 -0.20 -16.20 16 23 C -0.24 -6.03 9.93 -15.06 -0.15 -6.18 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 26 N -0.93 -26.59 13.06 55.49 0.72 -25.87 16 27 Si 0.90 21.48 29.55 -169.99 -5.02 16.46 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 30 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.71 6.70 -51.93 -0.35 0.36 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.40 7.70 -51.93 -0.40 1.00 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.43 6.64 -51.93 -0.34 1.09 16 37 H 0.09 1.43 5.72 -51.93 -0.30 1.13 16 38 H 0.18 2.10 5.88 -52.48 -0.31 1.79 16 39 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.15 1.91 5.98 -51.93 -0.31 1.60 16 41 H 0.10 0.99 7.79 -51.93 -0.40 0.59 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 0.96 7.99 -51.93 -0.41 0.55 16 47 H 0.09 1.59 7.74 -51.93 -0.40 1.19 16 48 H 0.10 1.39 3.34 -51.93 -0.17 1.22 16 49 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 51 H 0.38 9.19 5.94 -40.82 -0.24 8.95 16 52 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 398.60 15.07 6.01 6.01 Total: -1.00 -29.58 398.60 -9.71 -39.28 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -8.26 Total: 13.29 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.68 Total: -6.11 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.18 Total: -58.92 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.58 -9.71 -39.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037842629.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.522 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds