Wall clock time and date at job start Wed Apr 1 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47149 * 2 1 4 4 H 1.08999 * 109.52556 * 54.91694 * 3 2 1 5 5 C 1.53197 * 109.49674 * 294.83632 * 3 2 1 6 6 N 1.46962 * 108.88579 * 185.49462 * 5 3 2 7 7 C 1.34783 * 120.65157 * 233.53122 * 6 5 3 8 8 O 1.21632 * 119.99978 * 0.33543 * 7 6 5 9 9 C 1.47163 * 119.99824 * 180.33567 * 7 6 5 10 10 C 1.38397 * 126.88388 * 25.55938 * 9 7 6 11 11 C 1.39678 * 105.35825 * 179.91600 * 10 9 7 12 12 N 1.30867 * 107.86096 * 0.35408 * 11 10 9 13 13 N 1.28442 * 110.92449 * 359.77634 * 12 11 10 14 14 C 1.46503 * 125.19143 * 180.02562 * 13 12 11 15 15 C 1.53781 * 113.61320 * 31.46457 * 14 13 12 16 16 C 1.53953 * 87.02280 * 220.05261 * 15 14 13 17 17 C 1.53785 * 87.11074 * 25.36197 * 16 15 14 18 18 C 1.46923 * 118.71896 * 53.35578 * 6 5 3 19 19 C 1.53194 * 108.89261 * 306.64266 * 18 6 5 20 20 C 1.53038 * 109.31414 * 54.56236 * 19 18 6 21 21 H 1.09000 * 109.46173 * 58.65684 * 20 19 18 22 22 N 1.46498 * 109.46282 * 178.61635 * 20 19 18 23 23 C 1.36933 * 119.99928 * 275.00131 * 22 20 19 24 24 H 1.08003 * 120.00268 * 359.97438 * 23 22 20 25 25 C 1.38813 * 120.00125 * 179.97438 * 23 22 20 26 26 N 1.31613 * 120.00179 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00050 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47168 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47515 * 120.00022 * 27 25 23 30 30 H 1.48505 * 109.47308 * 239.99884 * 27 25 23 31 31 H 1.09004 * 109.47141 * 59.99595 * 1 2 3 32 32 H 1.08998 * 109.47429 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47348 * 300.00637 * 1 2 3 34 34 H 1.08996 * 109.47182 * 239.99964 * 2 1 3 35 35 H 1.08997 * 109.46954 * 119.99764 * 2 1 3 36 36 H 1.08997 * 109.58549 * 305.20401 * 5 3 2 37 37 H 1.08996 * 109.58755 * 65.48643 * 5 3 2 38 38 H 1.07998 * 127.32393 * 0.03864 * 10 9 7 39 39 H 1.08002 * 126.07255 * 180.15913 * 11 10 9 40 40 H 1.08994 * 112.85264 * 162.65904 * 14 13 12 41 41 H 1.09001 * 113.61554 * 334.57217 * 15 14 13 42 42 H 1.08997 * 113.61475 * 105.47330 * 15 14 13 43 43 H 1.09004 * 113.53238 * 270.81308 * 16 15 14 44 44 H 1.08999 * 113.74969 * 139.94519 * 16 15 14 45 45 H 1.08993 * 113.61505 * 220.09353 * 17 16 15 46 46 H 1.09000 * 113.69001 * 89.20174 * 17 16 15 47 47 H 1.08999 * 109.58727 * 186.78444 * 18 6 5 48 48 H 1.08994 * 109.58528 * 66.49931 * 18 6 5 49 49 H 1.09000 * 109.49876 * 174.51417 * 19 18 6 50 50 H 1.09001 * 109.49721 * 294.57673 * 19 18 6 51 51 H 0.96996 * 120.00411 * 94.99707 * 22 20 19 52 52 H 0.97000 * 120.00564 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 0.8407 5 6 1.6386 2.1267 -1.3106 6 7 2.2457 3.4644 -1.3542 7 6 1.4870 4.5565 -1.5738 8 8 0.2866 4.4413 -1.7322 9 6 2.1111 5.8884 -1.6220 10 6 3.4236 6.1793 -1.9506 11 6 3.5295 7.5688 -1.8555 12 7 2.3628 8.0363 -1.4908 13 7 1.5124 7.0847 -1.3455 14 6 0.1137 7.2562 -0.9451 15 6 -0.5041 8.5828 -1.4177 16 6 -1.1982 8.6558 -0.0454 17 6 -0.0562 7.7770 0.4919 18 6 3.6953 3.5887 -1.1499 19 6 4.0737 2.8881 0.1588 20 6 3.5653 1.4450 0.1257 21 1 4.0009 0.9260 -0.7280 22 7 3.9541 0.7620 1.3621 23 6 5.1917 0.1851 1.4654 24 1 5.8810 0.2332 0.6353 25 6 5.5604 -0.4617 2.6370 26 7 4.7207 -0.5199 3.6488 27 14 7.2489 -1.2481 2.7782 28 1 7.9974 -1.0441 1.5119 29 1 7.9939 -0.6229 3.9003 30 1 7.0975 -2.7030 3.0343 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.9965 1.5376 -2.1549 37 1 0.5532 2.2138 -1.3598 38 1 4.2003 5.4807 -2.2245 39 1 4.4175 8.1534 -2.0458 40 1 -0.5007 6.3843 -1.1690 41 1 0.2291 9.3731 -1.5787 42 1 -1.1958 8.4694 -2.2524 43 1 -2.1723 8.1672 -0.0239 44 1 -1.2175 9.6574 0.3840 45 1 -0.3869 7.0141 1.1965 46 1 0.8003 8.3454 0.8545 47 1 3.9671 4.6427 -1.0919 48 1 4.2229 3.1205 -1.9808 49 1 5.1578 2.8893 0.2719 50 1 3.6198 3.4151 0.9981 51 1 3.3350 0.7185 2.1075 52 1 4.9784 -0.9715 4.4677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037842630.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:17 Heat of formation + Delta-G solvation = 86.130720 kcal Electronic energy + Delta-G solvation = -31740.307454 eV Core-core repulsion = 27742.914244 eV Total energy + Delta-G solvation = -3997.393210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.77025 -39.99329 -38.72784 -37.78069 -34.95195 -33.85237 -31.96813 -31.75837 -31.23964 -29.53875 -28.52269 -26.05479 -25.94110 -25.26840 -24.00118 -23.41249 -22.04059 -21.86289 -20.85052 -20.34959 -19.55368 -19.02560 -17.43977 -17.12108 -16.73829 -16.04322 -15.87406 -15.79588 -15.07352 -14.85944 -14.58203 -14.29023 -13.96630 -13.81731 -13.56594 -13.34077 -13.23403 -13.04608 -13.00011 -12.86019 -12.69241 -12.53733 -12.15834 -11.78925 -11.62869 -11.48716 -11.33593 -11.06368 -10.97467 -10.93848 -10.86766 -10.75861 -10.57216 -10.37582 -10.22501 -10.15239 -9.98301 -9.74250 -9.63097 -9.26318 -9.05961 -8.87790 -8.55222 -6.98537 -5.80086 -3.08773 1.21534 2.19044 2.50596 2.99990 3.13207 3.40289 3.46146 3.48364 4.02159 4.16799 4.30314 4.42258 4.51272 4.55329 4.69687 4.98740 5.01888 5.17178 5.21335 5.25850 5.29389 5.36726 5.39529 5.40818 5.47039 5.54524 5.55904 5.56810 5.58009 5.58909 5.63299 5.66801 5.70314 5.83026 5.98385 6.02142 6.08423 6.12130 6.30143 6.31139 6.35621 6.38968 6.42847 6.51675 6.64167 6.65490 6.80056 6.91966 7.02954 7.35450 7.66855 7.94037 8.06832 8.37957 9.49654 10.06852 10.41650 11.42386 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.002835 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.333550 B = 9874.397490 C =10648.718845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.121 3.879 6 N -0.584 5.584 7 C 0.589 3.411 8 O -0.551 6.551 9 C -0.028 4.028 10 C -0.202 4.202 11 C -0.004 4.004 12 N -0.279 5.279 13 N -0.246 5.246 14 C 0.111 3.889 15 C -0.137 4.137 16 C -0.136 4.136 17 C -0.144 4.144 18 C 0.072 3.928 19 C -0.150 4.150 20 C 0.183 3.817 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.174 0.826 39 H 0.186 0.814 40 H 0.147 0.853 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.108 0.892 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.058 0.942 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 15.551 -11.720 21.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.002 4.002 6 N -0.315 5.315 7 C 0.376 3.624 8 O -0.430 6.430 9 C -0.156 4.156 10 C -0.231 4.231 11 C -0.180 4.180 12 N -0.111 5.111 13 N -0.033 5.033 14 C 0.011 3.989 15 C -0.175 4.175 16 C -0.174 4.174 17 C -0.182 4.182 18 C -0.050 4.050 19 C -0.191 4.191 20 C 0.072 3.928 21 H 0.066 0.934 22 N -0.360 5.360 23 C -0.368 4.368 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.219 1.219 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.191 0.809 39 H 0.203 0.797 40 H 0.164 0.836 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.126 0.874 48 H 0.089 0.911 49 H 0.096 0.904 50 H 0.077 0.923 51 H 0.218 0.782 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.002 16.381 -11.527 22.389 hybrid contribution 1.470 -1.273 0.302 1.968 sum -8.533 15.107 -11.226 20.665 Atomic orbital electron populations 1.21848 0.96808 1.01088 1.01271 1.21450 0.94366 0.95578 1.03571 1.21785 0.97832 0.96294 0.96491 0.91207 1.21836 0.99467 0.80692 0.98164 1.47853 1.08967 1.06186 1.68519 1.16950 0.85753 0.82628 0.77082 1.90731 1.14155 1.86302 1.51853 1.21429 0.94266 0.88765 1.11174 1.22591 0.95118 0.96821 1.08523 1.23598 0.95993 0.93564 1.04881 1.73057 1.00506 1.18269 1.19242 1.45757 1.09976 1.01919 1.45682 1.23750 0.76374 1.01578 0.97210 1.23315 0.99859 0.96170 0.98111 1.22724 0.97769 1.00903 0.96024 1.23383 0.99788 0.99916 0.95122 1.22799 0.78965 1.03902 0.99357 1.22666 1.02288 0.99080 0.95067 1.20205 0.90664 0.90642 0.91254 0.93355 1.42413 1.16525 1.64444 1.12665 1.19250 0.91794 1.27208 0.98574 0.91170 1.24725 0.98125 1.01573 0.96443 1.69663 1.35182 1.48436 1.04690 0.86165 0.84037 0.78894 0.77364 1.20575 1.21953 1.21940 0.93231 0.93117 0.93009 0.92379 0.89697 0.91271 0.88975 0.80947 0.79707 0.83577 0.88087 0.90407 0.89393 0.90157 0.90181 0.88908 0.87421 0.91119 0.90406 0.92298 0.78227 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.75 5.31 -26.73 -0.14 -1.89 16 3 C -0.10 -1.65 1.93 -90.50 -0.17 -1.83 16 4 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 5 C 0.12 1.70 5.32 -3.69 -0.02 1.68 16 6 N -0.58 -8.18 2.98 -174.11 -0.52 -8.70 16 7 C 0.59 8.79 7.57 -12.63 -0.10 8.69 16 8 O -0.55 -9.23 14.36 5.25 0.08 -9.16 16 9 C -0.03 -0.38 6.59 -82.06 -0.54 -0.92 16 10 C -0.20 -2.29 8.71 -38.99 -0.34 -2.63 16 11 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 12 N -0.28 -3.50 11.05 30.59 0.34 -3.16 16 13 N -0.25 -3.21 3.48 -49.91 -0.17 -3.38 16 14 C 0.11 1.26 4.45 -67.11 -0.30 0.96 16 15 C -0.14 -1.21 7.70 -25.83 -0.20 -1.41 16 16 C -0.14 -1.02 8.09 -25.83 -0.21 -1.23 16 17 C -0.14 -1.40 7.88 -25.91 -0.20 -1.60 16 18 C 0.07 0.92 5.46 -3.71 -0.02 0.90 16 19 C -0.15 -2.45 5.66 -26.61 -0.15 -2.60 16 20 C 0.18 3.33 2.19 -67.89 -0.15 3.19 16 21 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 22 N -0.72 -16.83 4.33 -53.39 -0.23 -17.06 16 23 C -0.24 -6.21 9.93 -15.06 -0.15 -6.36 16 24 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 26 N -0.93 -27.31 13.06 55.49 0.72 -26.58 16 27 Si 0.90 21.78 29.55 -169.99 -5.02 16.75 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 31 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.61 7.22 -51.93 -0.37 1.23 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.33 5.73 -51.93 -0.30 1.04 16 38 H 0.17 1.58 5.88 -52.49 -0.31 1.27 16 39 H 0.19 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.15 1.82 6.05 -51.93 -0.31 1.50 16 41 H 0.10 0.96 7.55 -51.93 -0.39 0.57 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.11 1.24 3.34 -51.93 -0.17 1.07 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 50 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.38 9.75 7.51 -40.82 -0.31 9.45 16 52 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 402.21 15.07 6.06 6.06 Total: -1.00 -30.88 402.21 -9.78 -40.66 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -8.40 Total: 12.02 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -2.64 Total: -7.45 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.14 Total: -58.89 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.88 -9.78 -40.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037842630.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.793 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds