Wall clock time and date at job start Wed Apr 1 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46561 * 2 1 4 4 H 1.08994 * 109.52420 * 305.07619 * 3 2 1 5 5 C 1.53186 * 109.48626 * 65.17212 * 3 2 1 6 6 N 1.46923 * 108.76459 * 174.59786 * 5 3 2 7 7 C 1.34777 * 120.63326 * 126.40510 * 6 5 3 8 8 O 1.21611 * 119.99635 * 353.74363 * 7 6 5 9 9 C 1.47428 * 120.00354 * 173.75096 * 7 6 5 10 10 C 1.41294 * 126.40896 * 329.89847 * 9 7 6 11 11 N 1.30451 * 108.01975 * 179.85772 * 10 9 7 12 12 N 1.39937 * 108.89643 * 0.40723 * 11 10 9 13 13 C 1.46498 * 125.75307 * 179.73576 * 12 11 10 14 14 C 1.53790 * 113.61459 * 192.49900 * 13 12 11 15 15 C 1.53781 * 87.08108 * 220.02116 * 14 13 12 16 16 C 1.53784 * 87.08264 * 25.43246 * 15 14 13 17 17 C 1.34257 * 108.49155 * 359.73749 * 12 11 10 18 18 C 1.46928 * 118.73850 * 306.38123 * 6 5 3 19 19 C 1.53194 * 108.77476 * 53.61065 * 18 6 5 20 20 C 1.53042 * 109.30915 * 305.36214 * 19 18 6 21 21 H 1.08997 * 109.46322 * 301.35835 * 20 19 18 22 22 N 1.46505 * 109.46042 * 181.38616 * 20 19 18 23 23 C 1.36939 * 119.99732 * 84.97129 * 22 20 19 24 24 H 1.07998 * 120.00186 * 0.02562 * 23 22 20 25 25 C 1.38815 * 119.99895 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99641 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99914 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.46991 * 90.00271 * 27 25 23 29 29 H 1.48498 * 109.47156 * 330.00294 * 27 25 23 30 30 H 1.48499 * 109.47010 * 210.00231 * 27 25 23 31 31 H 1.09000 * 109.46937 * 299.99852 * 1 2 3 32 32 H 1.08996 * 109.47212 * 60.00525 * 1 2 3 33 33 H 1.09000 * 109.46526 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46937 * 240.00148 * 2 1 3 35 35 H 1.08996 * 109.47212 * 119.99475 * 2 1 3 36 36 H 1.09000 * 109.60382 * 54.81116 * 5 3 2 37 37 H 1.08999 * 109.70236 * 294.44814 * 5 3 2 38 38 H 1.07991 * 125.99291 * 0.02562 * 10 9 7 39 39 H 1.08998 * 112.85516 * 323.80562 * 13 12 11 40 40 H 1.08996 * 113.61138 * 334.56966 * 14 13 12 41 41 H 1.09000 * 113.61318 * 105.47150 * 14 13 12 42 42 H 1.09003 * 113.61312 * 270.88204 * 15 14 13 43 43 H 1.09002 * 113.68913 * 139.99340 * 15 14 13 44 44 H 1.08997 * 113.61284 * 220.02448 * 16 15 14 45 45 H 1.08995 * 113.69256 * 89.12369 * 16 15 14 46 46 H 1.08005 * 126.28903 * 179.97438 * 17 12 11 47 47 H 1.09004 * 109.58840 * 293.81989 * 18 6 5 48 48 H 1.09006 * 109.70312 * 173.46720 * 18 6 5 49 49 H 1.09002 * 109.49753 * 185.41921 * 19 18 6 50 50 H 1.08994 * 109.52596 * 65.32886 * 19 18 6 51 51 H 0.97001 * 120.00003 * 264.97514 * 22 20 19 52 52 H 0.96996 * 119.99986 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6047 1.9828 -0.8407 5 6 1.6385 2.1265 1.3106 6 7 2.2447 3.4642 1.3507 7 6 1.4852 4.5561 1.5682 8 8 0.2745 4.4541 1.6202 9 6 2.1220 5.8743 1.7430 10 6 3.4016 6.1217 2.2887 11 7 3.6056 7.4100 2.2711 12 7 2.4791 8.0399 1.7301 13 6 2.3120 9.4834 1.5446 14 6 0.8684 9.8992 1.2153 15 6 1.4686 10.9020 0.2159 16 6 2.6903 9.9714 0.1361 17 6 1.5775 7.0982 1.4097 18 6 3.6948 3.5890 1.1497 19 6 4.0732 2.8884 -0.1591 20 6 3.5652 1.4452 -0.1257 21 1 4.0009 0.9264 0.7282 22 7 3.9541 0.7621 -1.3621 23 6 5.1921 0.1860 -1.4656 24 1 5.8816 0.2348 -0.6358 25 6 5.5609 -0.4607 -2.6373 26 7 4.7207 -0.5197 -3.6488 27 14 7.2493 -1.2472 -2.7783 28 1 7.1791 -2.6566 -2.3157 29 1 8.2164 -0.4976 -1.9368 30 1 7.6948 -1.2126 -4.1945 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5137 0.8900 36 1 1.9967 1.5376 2.1551 37 1 0.5533 2.2154 1.3614 38 1 4.0911 5.3750 2.6536 39 1 2.7643 10.0683 2.3454 40 1 0.2835 9.1096 0.7436 41 1 0.3491 10.3714 2.0492 42 1 1.6893 11.8757 0.6535 43 1 0.9130 10.9744 -0.7191 44 1 3.6417 10.5019 0.0988 45 1 2.6048 9.2011 -0.6304 46 1 0.6046 7.2672 0.9721 47 1 4.2207 3.1194 1.9810 48 1 3.9686 4.6426 1.0926 49 1 5.1574 2.8899 -0.2722 50 1 3.6190 3.4147 -0.9985 51 1 3.3348 0.7181 -2.1073 52 1 3.8442 -0.1109 -3.5756 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037848167.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:07 Heat of formation + Delta-G solvation = 76.585003 kcal Electronic energy + Delta-G solvation = -31118.981904 eV Core-core repulsion = 27121.174761 eV Total energy + Delta-G solvation = -3997.807143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.81024 -39.90661 -38.82031 -37.60924 -34.83911 -33.96535 -32.11691 -31.74502 -30.59626 -29.38007 -28.52558 -26.40438 -26.05004 -24.89294 -23.83852 -23.19051 -22.12390 -21.52384 -20.84893 -20.04296 -19.62778 -19.22524 -17.76673 -17.26113 -16.48676 -16.29132 -15.86824 -15.37301 -15.05368 -14.91283 -14.67555 -14.14030 -13.97714 -13.61391 -13.50829 -13.47645 -13.39308 -13.27400 -13.05528 -12.86974 -12.76392 -12.59311 -12.07972 -11.91521 -11.77968 -11.58481 -11.35267 -11.28244 -11.22994 -10.98949 -10.87674 -10.69524 -10.56394 -10.25774 -10.20541 -10.01193 -9.81296 -9.74426 -9.66989 -9.14659 -8.89333 -8.80704 -8.37250 -7.00748 -6.08331 -3.08043 1.41303 2.05303 2.08582 3.09008 3.41777 3.51902 3.56425 3.66716 3.70299 3.88355 4.15438 4.18973 4.45029 4.50788 4.67339 4.82029 4.95870 5.00426 5.04787 5.06904 5.19007 5.23023 5.26233 5.28722 5.34389 5.35053 5.41806 5.45441 5.50110 5.57091 5.62622 5.68555 5.70892 5.71215 5.87996 6.00752 6.10993 6.13001 6.21517 6.24951 6.33843 6.37854 6.42897 6.57327 6.61684 6.67131 6.79635 6.91043 7.03391 7.36522 7.59829 7.82476 8.34538 8.77159 9.24327 10.10763 10.26479 11.39993 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012357 B = 0.002618 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.321225 B =10693.645125 C =11964.256877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.068 0.932 5 C 0.122 3.878 6 N -0.601 5.601 7 C 0.595 3.405 8 O -0.556 6.556 9 C -0.284 4.284 10 C 0.078 3.922 11 N -0.297 5.297 12 N -0.351 5.351 13 C 0.132 3.868 14 C -0.148 4.148 15 C -0.137 4.137 16 C -0.148 4.148 17 C 0.120 3.880 18 C 0.097 3.903 19 C -0.149 4.149 20 C 0.189 3.811 21 H 0.049 0.951 22 N -0.732 5.732 23 C -0.327 4.327 24 H 0.064 0.936 25 C -0.046 4.046 26 N -0.945 5.945 27 Si 1.080 2.920 28 H -0.296 1.296 29 H -0.295 1.295 30 H -0.289 1.289 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.194 0.806 39 H 0.125 0.875 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.183 0.817 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.057 0.943 51 H 0.366 0.634 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.525 20.345 12.124 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.086 0.914 5 C -0.001 4.001 6 N -0.332 5.332 7 C 0.384 3.616 8 O -0.436 6.436 9 C -0.299 4.299 10 C -0.109 4.109 11 N -0.116 5.116 12 N -0.130 5.130 13 C 0.031 3.969 14 C -0.186 4.186 15 C -0.175 4.175 16 C -0.186 4.186 17 C -0.031 4.031 18 C -0.026 4.026 19 C -0.191 4.191 20 C 0.079 3.921 21 H 0.067 0.933 22 N -0.374 5.374 23 C -0.458 4.458 24 H 0.082 0.918 25 C -0.243 4.243 26 N -0.591 5.591 27 Si 0.912 3.088 28 H -0.224 1.224 29 H -0.222 1.222 30 H -0.215 1.215 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.211 0.789 39 H 0.143 0.857 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.109 0.891 46 H 0.200 0.800 47 H 0.085 0.915 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.075 0.925 51 H 0.200 0.800 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.135 20.502 11.587 24.336 hybrid contribution -1.521 0.196 0.573 1.637 sum -7.656 20.698 12.159 25.197 Atomic orbital electron populations 1.21844 0.96683 1.01057 1.01406 1.21438 0.94473 0.95731 1.03257 1.21792 0.97605 0.96154 0.96967 0.91365 1.21716 0.99483 0.81315 0.97561 1.47907 1.08518 1.06448 1.70357 1.17275 0.85826 0.82756 0.75767 1.90736 1.13791 1.86086 1.52947 1.20229 0.98101 0.93721 1.17878 1.24272 0.95393 0.93489 0.97781 1.77180 1.06861 1.07675 1.19911 1.48564 1.11821 1.06417 1.46206 1.23146 0.98714 0.75731 0.99343 1.23453 0.94688 0.99910 1.00551 1.22708 0.97003 0.97587 1.00162 1.23454 0.99700 0.99625 0.95835 1.22754 0.95769 0.87461 0.97081 1.22213 0.79597 1.01867 0.98934 1.22640 1.02114 0.99019 0.95289 1.20129 0.90693 0.90509 0.90781 0.93329 1.42427 1.16476 1.65690 1.12764 1.20038 0.92437 1.31864 1.01486 0.91805 1.25711 1.05796 1.00368 0.92434 1.70844 1.08394 1.47697 1.32124 0.83223 0.74328 0.75721 0.75557 1.22392 1.22211 1.21506 0.93039 0.93039 0.93144 0.90321 0.92340 0.91674 0.89064 0.78921 0.85702 0.88689 0.89610 0.89204 0.89937 0.89972 0.89076 0.80033 0.91516 0.89409 0.90635 0.92462 0.80020 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.68 37.16 0.36 -1.77 16 2 C -0.11 -1.81 5.31 -26.72 -0.14 -1.95 16 3 C -0.11 -1.75 1.92 -90.50 -0.17 -1.92 16 4 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 5 C 0.12 1.81 5.33 -3.72 -0.02 1.79 16 6 N -0.60 -8.81 2.97 -174.03 -0.52 -9.32 16 7 C 0.59 9.17 7.62 -12.52 -0.10 9.08 16 8 O -0.56 -10.06 16.44 5.27 0.09 -9.97 16 9 C -0.28 -3.73 5.52 -105.07 -0.58 -4.31 16 10 C 0.08 0.93 9.58 -16.98 -0.16 0.76 16 11 N -0.30 -3.66 12.50 30.86 0.39 -3.28 16 12 N -0.35 -3.65 3.77 -53.52 -0.20 -3.85 16 13 C 0.13 0.92 5.03 -67.11 -0.34 0.58 16 14 C -0.15 -0.72 7.42 -25.91 -0.19 -0.91 16 15 C -0.14 -0.56 8.08 -25.92 -0.21 -0.77 16 16 C -0.15 -0.90 7.88 -25.91 -0.20 -1.10 16 17 C 0.12 1.34 10.61 -16.56 -0.18 1.17 16 18 C 0.10 1.32 5.21 -3.71 -0.02 1.30 16 19 C -0.15 -2.57 5.66 -26.61 -0.15 -2.72 16 20 C 0.19 3.61 2.19 -67.88 -0.15 3.46 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.73 -17.57 4.33 -53.38 -0.23 -17.80 16 23 C -0.33 -8.88 9.93 -15.06 -0.15 -9.03 16 24 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 25 C -0.05 -1.30 5.50 -17.43 -0.10 -1.39 16 26 N -0.95 -28.90 13.70 55.49 0.76 -28.14 16 27 Si 1.08 25.74 29.92 -169.99 -5.09 20.65 16 28 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.30 -6.63 7.11 56.52 0.40 -6.23 16 30 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 31 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.52 7.22 -51.93 -0.37 1.15 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.41 5.72 -51.93 -0.30 1.11 16 38 H 0.19 1.89 6.52 -52.49 -0.34 1.55 16 39 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.49 6.29 -51.93 -0.33 0.16 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.18 1.65 6.65 -52.48 -0.35 1.30 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.09 1.09 4.24 -51.93 -0.22 0.87 16 49 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.37 9.27 6.34 -40.82 -0.26 9.01 16 52 H 0.26 7.70 6.77 -40.82 -0.28 7.42 16 LS Contribution 403.77 15.07 6.08 6.08 Total: -1.00 -33.80 403.77 -9.55 -43.36 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -8.34 Total: 10.03 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -2.50 Total: -7.75 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 0.20 Total: -62.40 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.09 Total: 20.65 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.80 -9.55 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037848167.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.942 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds