Wall clock time and date at job start Wed Apr 1 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47140 * 2 1 4 4 H 1.09001 * 109.49689 * 55.06474 * 3 2 1 5 5 C 1.53196 * 109.49897 * 295.00109 * 3 2 1 6 6 N 1.46928 * 108.77374 * 185.41393 * 5 3 2 7 7 C 1.34778 * 120.62660 * 233.58803 * 6 5 3 8 8 O 1.21605 * 120.00281 * 6.38431 * 7 6 5 9 9 C 1.47433 * 119.99649 * 186.39057 * 7 6 5 10 10 C 1.41291 * 126.41544 * 29.17713 * 9 7 6 11 11 N 1.30444 * 108.01916 * 180.02562 * 10 9 7 12 12 N 1.39935 * 108.90201 * 0.02562 * 11 10 9 13 13 C 1.46494 * 125.75659 * 179.97438 * 12 11 10 14 14 C 1.53783 * 113.62001 * 265.02614 * 13 12 11 15 15 C 1.53783 * 87.08171 * 220.02080 * 14 13 12 16 16 C 1.53774 * 87.08199 * 25.43165 * 15 14 13 17 17 C 1.34259 * 108.49019 * 0.22553 * 12 11 10 18 18 C 1.46916 * 118.74057 * 53.86119 * 6 5 3 19 19 C 1.53621 * 108.54517 * 306.09311 * 18 6 5 20 20 C 1.53041 * 109.49847 * 175.16471 * 3 2 1 21 21 H 1.09003 * 109.45833 * 301.32441 * 20 3 2 22 22 N 1.46503 * 109.46091 * 61.29544 * 20 3 2 23 23 C 1.36931 * 119.99733 * 205.00026 * 22 20 3 24 24 H 1.08004 * 120.00561 * 0.02562 * 23 22 20 25 25 C 1.38815 * 119.99817 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00182 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00212 * 179.97438 * 25 23 22 28 28 H 1.48509 * 109.46725 * 90.00191 * 27 25 23 29 29 H 1.48493 * 109.47179 * 210.00287 * 27 25 23 30 30 H 1.48500 * 109.47258 * 330.00716 * 27 25 23 31 31 H 1.08999 * 109.47351 * 59.99607 * 1 2 3 32 32 H 1.08994 * 109.47613 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47146 * 300.00108 * 1 2 3 34 34 H 1.09005 * 109.46775 * 240.00286 * 2 1 3 35 35 H 1.08999 * 109.47351 * 120.00393 * 2 1 3 36 36 H 1.08999 * 109.58574 * 65.62854 * 5 3 2 37 37 H 1.09001 * 109.58534 * 305.19920 * 5 3 2 38 38 H 1.07996 * 125.98910 * 0.05821 * 10 9 7 39 39 H 1.09004 * 112.91012 * 36.28069 * 13 12 11 40 40 H 1.08997 * 113.61418 * 105.46943 * 14 13 12 41 41 H 1.09003 * 113.61269 * 334.56867 * 14 13 12 42 42 H 1.08999 * 113.61148 * 139.98232 * 15 14 13 43 43 H 1.08997 * 113.60731 * 270.87971 * 15 14 13 44 44 H 1.08995 * 113.61761 * 89.11880 * 16 15 14 45 45 H 1.09001 * 113.61048 * 220.02210 * 16 15 14 46 46 H 1.08003 * 126.29162 * 179.74975 * 17 12 11 47 47 H 1.09007 * 109.58704 * 65.92263 * 18 6 5 48 48 H 1.08997 * 109.58931 * 186.35007 * 18 6 5 49 49 H 1.09000 * 109.63735 * 294.86110 * 19 18 6 50 50 H 1.09005 * 109.46332 * 174.74051 * 19 18 6 51 51 H 0.96991 * 119.99715 * 25.00045 * 22 20 3 52 52 H 0.96999 * 120.00484 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6350 2.1281 -1.3088 6 7 2.2415 3.4657 -1.3493 7 6 1.4815 4.5580 -1.5636 8 8 0.2706 4.4567 -1.6099 9 6 2.1184 5.8756 -1.7420 10 6 3.4029 6.1208 -2.2772 11 7 3.6040 7.4096 -2.2695 12 7 2.4749 8.0414 -1.7364 13 6 2.3066 9.4856 -1.5574 14 6 2.6787 9.9794 -0.1494 15 6 1.4571 10.9094 -0.2382 16 6 0.8615 9.9022 -1.2360 17 6 1.5741 7.1004 -1.4114 18 6 3.6928 3.5894 -1.1578 19 6 4.0740 2.8880 0.1547 20 6 3.5655 1.4449 0.1216 21 1 3.8574 0.9361 1.0403 22 7 4.1479 0.7485 -1.0282 23 6 5.3860 0.1727 -0.9247 24 1 5.9330 0.2317 0.0047 25 6 5.9376 -0.4876 -2.0140 26 7 5.2709 -0.5599 -3.1465 27 14 7.6269 -1.2725 -1.8730 28 1 7.4833 -2.6763 -1.4101 29 1 8.2933 -1.2544 -3.1999 30 1 8.4467 -0.5108 -0.8968 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8932 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 0.5496 2.2175 -1.3538 37 1 1.9907 1.5398 -2.1547 38 1 4.0963 5.3723 -2.6312 39 1 2.7610 10.0683 -2.3587 40 1 3.6297 10.5105 -0.1101 41 1 2.5887 9.2127 0.6202 42 1 0.8967 10.9842 0.6937 43 1 1.6794 11.8812 -0.6789 44 1 0.2748 9.1145 -0.7637 45 1 0.3457 10.3710 -2.0741 46 1 0.6014 7.2705 -0.9740 47 1 4.2130 3.1178 -1.9917 48 1 3.9658 4.6432 -1.1032 49 1 3.6220 3.4138 0.9957 50 1 5.1584 2.8892 0.2655 51 1 3.6565 0.6953 -1.8627 52 1 5.6565 -1.0210 -3.9078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037848169.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:12 Heat of formation + Delta-G solvation = 79.336728 kcal Electronic energy + Delta-G solvation = -31494.056763 eV Core-core repulsion = 27496.368944 eV Total energy + Delta-G solvation = -3997.687819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.67140 -39.77937 -38.74728 -37.49886 -34.39423 -33.70052 -31.97664 -31.59292 -30.43236 -29.33654 -28.42005 -26.35907 -26.00457 -24.95015 -23.75953 -23.50623 -22.21103 -21.46647 -20.66086 -19.86057 -19.42501 -18.47583 -17.48822 -17.29782 -16.26289 -16.18092 -15.65470 -15.22328 -15.02829 -14.55865 -14.45564 -14.21965 -13.89609 -13.68286 -13.44107 -13.32274 -13.21763 -13.03090 -12.89984 -12.77758 -12.49890 -12.43843 -12.11432 -11.85170 -11.62098 -11.33672 -11.22487 -11.17606 -11.02081 -10.93844 -10.87717 -10.74574 -10.64064 -10.23397 -10.20304 -10.12812 -9.72382 -9.58217 -9.51319 -9.46010 -8.88713 -8.66223 -8.06988 -6.93625 -5.76082 -3.04057 1.54495 2.19502 2.24790 3.34171 3.43509 3.49392 3.50648 3.60630 3.75284 3.94370 4.20767 4.25310 4.57527 4.60127 4.66719 4.96054 5.08364 5.09686 5.11594 5.21628 5.30046 5.32940 5.37241 5.38575 5.42025 5.50046 5.57757 5.61546 5.65270 5.67382 5.75973 5.76504 5.89093 5.92172 5.99260 6.16393 6.21820 6.27376 6.37986 6.42179 6.46270 6.48801 6.62736 6.73746 6.74854 6.77535 6.85180 7.00900 7.10242 7.51834 7.71537 7.86520 8.42552 8.56074 9.54248 10.11531 10.46856 11.46310 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.002851 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.510730 B = 9818.340062 C =11202.877638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.121 3.879 6 N -0.595 5.595 7 C 0.592 3.408 8 O -0.562 6.562 9 C -0.281 4.281 10 C 0.080 3.920 11 N -0.299 5.299 12 N -0.354 5.354 13 C 0.133 3.867 14 C -0.147 4.147 15 C -0.137 4.137 16 C -0.148 4.148 17 C 0.116 3.884 18 C 0.103 3.897 19 C -0.148 4.148 20 C 0.178 3.822 21 H 0.049 0.951 22 N -0.718 5.718 23 C -0.235 4.235 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.197 0.803 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.181 0.819 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.047 0.953 50 H 0.072 0.928 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.086 20.096 6.236 22.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.001 4.001 6 N -0.326 5.326 7 C 0.381 3.619 8 O -0.442 6.442 9 C -0.296 4.296 10 C -0.107 4.107 11 N -0.118 5.118 12 N -0.133 5.133 13 C 0.032 3.968 14 C -0.186 4.186 15 C -0.175 4.175 16 C -0.186 4.186 17 C -0.034 4.034 18 C -0.019 4.019 19 C -0.189 4.189 20 C 0.068 3.932 21 H 0.067 0.933 22 N -0.361 5.361 23 C -0.366 4.366 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.734 3.266 28 H -0.219 1.219 29 H -0.219 1.219 30 H -0.209 1.209 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.214 0.786 39 H 0.142 0.858 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.198 0.802 47 H 0.102 0.898 48 H 0.099 0.901 49 H 0.066 0.934 50 H 0.091 0.909 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.716 21.046 5.962 23.547 hybrid contribution 0.492 -1.197 -0.077 1.297 sum -8.225 19.849 5.885 22.277 Atomic orbital electron populations 1.21850 0.96858 1.00945 1.01373 1.21417 0.94244 0.95833 1.03305 1.21738 0.97315 0.96023 0.97150 0.91639 1.21676 0.98767 0.81485 0.98205 1.47882 1.08613 1.06246 1.69860 1.17262 0.85833 0.82796 0.76026 1.90716 1.13830 1.86200 1.53476 1.20282 0.97889 0.93792 1.17599 1.24389 0.95499 0.93419 0.97369 1.77192 1.06669 1.07677 1.20245 1.48544 1.11934 1.06247 1.46537 1.23093 0.98575 0.75921 0.99252 1.23450 0.99619 0.99534 0.95987 1.22706 0.97061 0.97593 1.00110 1.23451 0.94795 0.99823 1.00562 1.22717 0.95744 0.87528 0.97453 1.22197 0.79267 1.00689 0.99765 1.22582 1.01616 0.99142 0.95598 1.20223 0.89793 0.90678 0.92490 0.93285 1.42469 1.18989 1.63990 1.10605 1.19208 0.93580 1.26838 0.97014 0.91328 1.24688 0.98477 1.01560 0.96060 1.69644 1.38069 1.48104 1.02232 0.86258 0.84360 0.79342 0.76606 1.21906 1.21936 1.20888 0.92742 0.93243 0.93421 0.90498 0.92123 0.89588 0.90782 0.78644 0.85772 0.90040 0.89157 0.90036 0.89247 0.88704 0.89654 0.80162 0.89752 0.90144 0.93442 0.90901 0.78081 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 37.15 0.36 -1.76 16 2 C -0.11 -1.78 5.19 -26.73 -0.14 -1.92 16 3 C -0.10 -1.69 2.14 -90.50 -0.19 -1.88 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.12 2.08 5.03 -3.71 -0.02 2.06 16 6 N -0.60 -9.96 2.97 -173.77 -0.52 -10.47 16 7 C 0.59 10.09 7.62 -12.52 -0.10 9.99 16 8 O -0.56 -10.93 16.44 5.27 0.09 -10.84 16 9 C -0.28 -4.10 5.54 -105.06 -0.58 -4.68 16 10 C 0.08 1.12 9.58 -16.98 -0.16 0.96 16 11 N -0.30 -4.12 12.50 30.86 0.39 -3.74 16 12 N -0.35 -4.01 3.77 -53.52 -0.20 -4.22 16 13 C 0.13 1.01 5.02 -67.12 -0.34 0.68 16 14 C -0.15 -0.93 7.88 -25.92 -0.20 -1.13 16 15 C -0.14 -0.59 8.08 -25.92 -0.21 -0.80 16 16 C -0.15 -0.79 7.42 -25.92 -0.19 -0.99 16 17 C 0.12 1.40 10.61 -16.56 -0.18 1.23 16 18 C 0.10 1.68 4.97 -3.49 -0.02 1.66 16 19 C -0.15 -2.50 5.79 -26.39 -0.15 -2.65 16 20 C 0.18 3.33 2.53 -67.89 -0.17 3.16 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.72 -16.37 3.71 -53.38 -0.20 -16.57 16 23 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 24 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -26.96 13.06 55.49 0.72 -26.24 16 27 Si 0.90 21.80 29.55 -169.99 -5.02 16.78 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 31 H 0.05 0.76 6.70 -51.93 -0.35 0.41 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.44 7.69 -51.93 -0.40 1.04 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.49 5.71 -51.93 -0.30 1.19 16 37 H 0.07 1.40 6.64 -51.93 -0.34 1.06 16 38 H 0.20 2.56 6.44 -52.49 -0.34 2.22 16 39 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.09 0.52 6.29 -51.93 -0.33 0.20 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.18 1.76 6.65 -52.48 -0.35 1.41 16 47 H 0.08 1.56 7.74 -51.92 -0.40 1.16 16 48 H 0.08 1.16 4.16 -51.93 -0.22 0.95 16 49 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 51 H 0.38 9.40 5.94 -40.82 -0.24 9.16 16 52 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 401.73 15.07 6.05 6.05 Total: -1.00 -31.46 401.73 -9.53 -40.99 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -8.30 Total: 10.99 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.54 Total: -2.73 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.19 Total: -61.23 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.46 -9.53 -40.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037848169.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.330 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds