Wall clock time and date at job start Wed Apr 1 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47483 * 2 1 4 4 H 1.09010 * 109.52054 * 54.91721 * 3 2 1 5 5 C 1.52758 * 109.56352 * 294.96854 * 3 2 1 6 6 N 1.46928 * 109.00857 * 185.54702 * 5 3 2 7 7 C 1.34773 * 120.63488 * 233.58098 * 6 5 3 8 8 O 1.21598 * 120.00389 * 183.41836 * 7 6 5 9 9 C 1.47432 * 119.99612 * 3.42447 * 7 6 5 10 10 C 1.41287 * 126.41454 * 317.04952 * 9 7 6 11 11 N 1.30449 * 108.02578 * 180.02562 * 10 9 7 12 12 N 1.39939 * 108.89217 * 359.97438 * 11 10 9 13 13 C 1.46498 * 125.75366 * 180.02562 * 12 11 10 14 14 C 1.53778 * 113.61710 * 194.10917 * 13 12 11 15 15 C 1.53960 * 87.02324 * 220.04679 * 14 13 12 16 16 C 1.53783 * 87.10839 * 25.36437 * 15 14 13 17 17 C 1.34251 * 108.49723 * 359.97438 * 12 11 10 18 18 C 1.46929 * 118.73360 * 53.30942 * 6 5 3 19 19 C 1.53193 * 108.77698 * 306.63901 * 18 6 5 20 20 C 1.53033 * 109.50110 * 174.99774 * 3 2 1 21 21 H 1.08997 * 109.46152 * 61.29977 * 20 3 2 22 22 N 1.46501 * 109.46310 * 301.33908 * 20 3 2 23 23 C 1.36936 * 120.00072 * 154.92744 * 22 20 3 24 24 H 1.08001 * 119.99969 * 0.02562 * 23 22 20 25 25 C 1.38813 * 119.99857 * 179.97438 * 23 22 20 26 26 N 1.31617 * 120.00255 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00081 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.46751 * 90.00200 * 27 25 23 29 29 H 1.48492 * 109.47375 * 210.00719 * 27 25 23 30 30 H 1.48500 * 109.46788 * 330.00705 * 27 25 23 31 31 H 1.08998 * 109.47215 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46904 * 299.99723 * 1 2 3 33 33 H 1.08999 * 109.47157 * 60.00362 * 1 2 3 34 34 H 1.08998 * 109.47344 * 239.99673 * 2 1 3 35 35 H 1.09006 * 109.47040 * 120.00296 * 2 1 3 36 36 H 1.09001 * 109.50934 * 65.66616 * 5 3 2 37 37 H 1.08996 * 109.43274 * 305.38468 * 5 3 2 38 38 H 1.08002 * 125.98909 * 0.02562 * 10 9 7 39 39 H 1.08999 * 112.85015 * 325.30906 * 13 12 11 40 40 H 1.08996 * 113.61446 * 334.56966 * 14 13 12 41 41 H 1.09006 * 113.61252 * 105.46937 * 14 13 12 42 42 H 1.09000 * 113.54001 * 270.81258 * 15 14 13 43 43 H 1.08998 * 113.66676 * 139.93253 * 15 14 13 44 44 H 1.09004 * 113.61187 * 220.08915 * 16 15 14 45 45 H 1.08995 * 113.61659 * 89.18857 * 16 15 14 46 46 H 1.07998 * 126.30136 * 179.73337 * 17 12 11 47 47 H 1.09003 * 109.58926 * 66.43328 * 18 6 5 48 48 H 1.09011 * 109.58197 * 186.71166 * 18 6 5 49 49 H 1.08996 * 109.49741 * 174.58967 * 19 18 6 50 50 H 1.08996 * 109.49832 * 294.68588 * 19 18 6 51 51 H 0.96999 * 119.99849 * 334.92872 * 22 20 3 52 52 H 0.96994 * 120.00376 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 0.8408 5 6 1.6377 2.1273 -1.3049 6 7 2.2451 3.4644 -1.3506 7 6 1.4857 4.5565 -1.5672 8 8 2.0077 5.6504 -1.6648 9 6 0.0220 4.4249 -1.6856 10 6 -0.6750 3.4263 -2.4019 11 7 -1.9530 3.6504 -2.2669 12 7 -2.1321 4.7861 -1.4692 13 6 -3.4206 5.3663 -1.0828 14 6 -3.3076 6.7851 -0.5006 15 6 -4.3803 6.3648 0.5207 16 6 -3.9067 4.9176 0.3056 17 6 -0.9240 5.2539 -1.1168 18 6 3.6952 3.5887 -1.1498 19 6 4.0737 2.8881 0.1590 20 6 3.5652 1.4450 0.1258 21 1 4.0008 0.9261 -0.7280 22 7 3.9541 0.7620 1.3621 23 6 5.1917 0.1850 1.4653 24 1 5.8812 0.2338 0.6355 25 6 5.5604 -0.4617 2.6370 26 7 4.7204 -0.5207 3.6485 27 14 7.2489 -1.2482 2.7781 28 1 8.2139 -0.2556 3.3155 29 1 7.1767 -2.4147 3.6942 30 1 7.6984 -1.6994 1.4366 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 0.5523 2.2173 -1.3492 37 1 1.9921 1.5359 -2.1490 38 1 -0.2281 2.6187 -2.9628 39 1 -4.1774 5.2729 -1.8616 40 1 -2.3370 6.9971 -0.0522 41 1 -3.6380 7.5658 -1.1858 42 1 -5.3999 6.5457 0.1806 43 1 -4.1962 6.7392 1.5277 44 1 -4.7200 4.1927 0.2702 45 1 -3.1002 4.6180 0.9748 46 1 -0.7281 6.1223 -0.5055 47 1 4.2209 3.1189 -1.9811 48 1 3.9674 4.6428 -1.0943 49 1 5.1577 2.8894 0.2720 50 1 3.6193 3.4147 0.9981 51 1 3.3350 0.7185 2.1075 52 1 4.9779 -0.9729 4.4670 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037848170.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:17 Heat of formation + Delta-G solvation = 74.564748 kcal Electronic energy + Delta-G solvation = -31450.494931 eV Core-core repulsion = 27452.600183 eV Total energy + Delta-G solvation = -3997.894748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.77232 -39.85499 -38.75698 -37.63286 -34.52802 -33.71920 -32.40524 -31.60427 -30.56394 -29.39101 -28.55025 -26.36598 -25.99401 -25.11299 -23.85710 -23.25346 -21.97832 -21.52148 -20.65328 -19.94765 -19.61256 -19.14206 -17.88459 -17.02387 -16.46461 -16.24647 -15.80759 -15.28803 -14.99919 -14.79604 -14.62273 -14.15393 -13.96847 -13.75817 -13.46371 -13.40680 -13.26777 -13.07133 -12.98708 -12.81191 -12.60574 -12.49984 -12.06784 -11.87897 -11.81248 -11.45878 -11.31613 -11.27004 -11.19763 -10.96480 -10.89520 -10.81421 -10.65031 -10.33946 -10.20657 -10.14462 -9.81359 -9.70631 -9.68606 -9.46124 -8.88755 -8.75083 -8.33598 -6.94048 -5.76218 -3.04406 1.48085 2.10241 2.14706 3.04593 3.41250 3.43675 3.49301 3.50378 3.70932 3.91435 4.18974 4.22350 4.48867 4.53172 4.59318 4.84990 4.98957 5.03344 5.07405 5.09708 5.18492 5.24091 5.31073 5.34717 5.37789 5.45220 5.48552 5.50074 5.59006 5.59809 5.69766 5.70000 5.74322 5.75763 5.87147 6.07794 6.11532 6.17287 6.25127 6.33168 6.40618 6.41935 6.53083 6.59208 6.65513 6.75211 6.88941 6.98547 7.10621 7.40035 7.63941 7.70823 8.38090 8.42249 9.53723 10.11410 10.46303 11.46334 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.002602 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.667198 B =10756.454341 C =11306.707401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.068 0.932 5 C 0.105 3.895 6 N -0.598 5.598 7 C 0.594 3.406 8 O -0.553 6.553 9 C -0.280 4.280 10 C 0.077 3.923 11 N -0.295 5.295 12 N -0.351 5.351 13 C 0.133 3.867 14 C -0.148 4.148 15 C -0.137 4.137 16 C -0.148 4.148 17 C 0.115 3.885 18 C 0.114 3.886 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.236 4.236 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.933 5.933 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.191 0.809 39 H 0.125 0.875 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.181 0.819 47 H 0.063 0.937 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.058 0.942 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.129 11.616 -10.368 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.018 4.018 6 N -0.330 5.330 7 C 0.382 3.618 8 O -0.432 6.432 9 C -0.295 4.295 10 C -0.110 4.110 11 N -0.115 5.115 12 N -0.130 5.130 13 C 0.031 3.969 14 C -0.186 4.186 15 C -0.175 4.175 16 C -0.186 4.186 17 C -0.035 4.035 18 C -0.009 4.009 19 C -0.191 4.191 20 C 0.073 3.927 21 H 0.066 0.934 22 N -0.361 5.361 23 C -0.367 4.367 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.208 1.208 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.207 0.793 39 H 0.143 0.857 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.198 0.802 47 H 0.082 0.918 48 H 0.103 0.897 49 H 0.093 0.907 50 H 0.077 0.923 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.982 11.738 -10.716 25.533 hybrid contribution 1.643 -0.293 0.694 1.807 sum -18.340 11.445 -10.022 23.828 Atomic orbital electron populations 1.21825 0.96892 1.01044 1.01021 1.21462 0.94200 0.95795 1.03599 1.21686 0.97877 0.96125 0.96697 0.91308 1.22092 0.98947 0.82308 0.98459 1.47970 1.08393 1.06588 1.70045 1.17302 0.84934 0.83688 0.75876 1.90743 1.74205 1.26322 1.51969 1.20217 0.94175 1.02287 1.12841 1.24088 0.90177 0.98147 0.98565 1.77157 1.18446 1.02317 1.13542 1.48522 1.05448 1.21183 1.37805 1.23130 0.82562 0.93941 0.97226 1.23489 1.01187 0.95046 0.98924 1.22739 0.98824 0.95767 1.00151 1.23458 1.01965 0.97838 0.95340 1.22691 0.84142 0.98417 0.98292 1.21706 0.78741 1.02084 0.98337 1.22666 1.02110 0.98906 0.95415 1.20195 0.90664 0.90679 0.91141 0.93418 1.42408 1.16468 1.64478 1.12715 1.19220 0.91816 1.27079 0.98569 0.91238 1.24714 0.98090 1.01657 0.96452 1.69653 1.35188 1.48567 1.04722 0.86233 0.84222 0.78728 0.77271 1.21822 1.21881 1.20804 0.93146 0.93183 0.93419 0.92360 0.89761 0.89101 0.91419 0.79279 0.85733 0.88709 0.89651 0.89249 0.89934 0.89988 0.89024 0.80190 0.91830 0.89689 0.90665 0.92345 0.78268 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 37.15 0.36 -1.57 16 2 C -0.11 -1.72 5.31 -26.73 -0.14 -1.87 16 3 C -0.10 -1.63 1.91 -90.73 -0.17 -1.80 16 4 H 0.07 1.18 8.14 -51.92 -0.42 0.75 16 5 C 0.11 1.38 4.57 -3.93 -0.02 1.36 16 6 N -0.60 -8.77 2.98 -174.29 -0.52 -9.29 16 7 C 0.59 9.17 7.59 -12.52 -0.09 9.08 16 8 O -0.55 -10.19 16.52 5.28 0.09 -10.11 16 9 C -0.28 -3.64 5.33 -105.06 -0.56 -4.20 16 10 C 0.08 0.90 9.57 -16.98 -0.16 0.74 16 11 N -0.30 -3.54 12.50 30.86 0.39 -3.16 16 12 N -0.35 -3.59 3.77 -53.52 -0.20 -3.79 16 13 C 0.13 0.92 5.01 -67.12 -0.34 0.58 16 14 C -0.15 -0.74 7.45 -25.83 -0.19 -0.93 16 15 C -0.14 -0.57 8.09 -25.82 -0.21 -0.78 16 16 C -0.15 -0.90 7.88 -25.91 -0.20 -1.10 16 17 C 0.11 1.28 10.69 -16.56 -0.18 1.10 16 18 C 0.11 1.75 6.43 -3.71 -0.02 1.73 16 19 C -0.15 -2.66 5.66 -26.61 -0.15 -2.82 16 20 C 0.18 3.45 2.20 -67.89 -0.15 3.30 16 21 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 22 N -0.72 -17.16 4.33 -53.39 -0.23 -17.39 16 23 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 24 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 27 Si 0.90 22.13 29.55 -169.99 -5.02 17.10 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.54 6.70 -51.93 -0.35 0.19 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.58 7.22 -51.93 -0.37 1.21 16 36 H 0.09 1.08 2.88 -51.93 -0.15 0.93 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.19 1.78 7.10 -52.49 -0.37 1.41 16 39 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.50 6.29 -51.93 -0.33 0.17 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.18 1.64 6.66 -52.49 -0.35 1.29 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.08 1.36 7.02 -51.92 -0.36 0.99 16 49 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 50 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 51 H 0.38 9.85 7.51 -40.82 -0.31 9.54 16 52 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 406.40 15.07 6.12 6.12 Total: -1.00 -32.68 406.40 -9.61 -42.29 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.48 Total: 9.22 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.48 Total: -4.10 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.16 Total: -60.53 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.68 -9.61 -42.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037848170.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.854 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds