Wall clock time and date at job start Wed Apr 1 2020 06:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47269 * 2 1 4 4 H 1.08997 * 109.50031 * 304.93597 * 3 2 1 5 5 C 1.53198 * 109.49867 * 65.00003 * 3 2 1 6 6 N 1.46923 * 108.77711 * 174.58534 * 5 3 2 7 7 C 1.34782 * 120.62707 * 126.37084 * 6 5 3 8 8 O 1.21602 * 120.00215 * 3.70051 * 7 6 5 9 9 C 1.47428 * 119.99739 * 183.70239 * 7 6 5 10 10 C 1.41287 * 126.41353 * 317.06999 * 9 7 6 11 11 N 1.30455 * 108.02238 * 179.76200 * 10 9 7 12 12 N 1.39939 * 108.89241 * 0.40328 * 11 10 9 13 13 C 1.46500 * 125.75051 * 179.85243 * 12 11 10 14 14 C 1.53781 * 113.61869 * 94.69249 * 13 12 11 15 15 C 1.53779 * 87.17407 * 139.93492 * 14 13 12 16 16 C 1.53789 * 113.61287 * 192.19059 * 13 12 11 17 17 C 1.34254 * 108.49319 * 359.58323 * 12 11 10 18 18 C 1.46923 * 118.74095 * 306.64670 * 6 5 3 19 19 C 1.52757 * 109.00896 * 53.30452 * 18 6 5 20 20 C 1.53041 * 109.38594 * 305.59032 * 19 18 6 21 21 H 1.09002 * 109.44798 * 181.25203 * 20 19 18 22 22 N 1.46495 * 109.45971 * 301.21646 * 20 19 18 23 23 C 1.36930 * 120.00448 * 275.06867 * 22 20 19 24 24 H 1.08001 * 119.99787 * 359.97438 * 23 22 20 25 25 C 1.38815 * 120.00456 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99459 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00102 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46895 * 90.00309 * 27 25 23 29 29 H 1.48500 * 109.47057 * 209.99919 * 27 25 23 30 30 H 1.48503 * 109.47515 * 330.00194 * 27 25 23 31 31 H 1.09005 * 109.47379 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46918 * 299.99729 * 1 2 3 33 33 H 1.08993 * 109.47304 * 60.00153 * 1 2 3 34 34 H 1.09002 * 109.47238 * 239.99869 * 2 1 3 35 35 H 1.09004 * 109.47076 * 120.00248 * 2 1 3 36 36 H 1.09010 * 109.58384 * 54.79970 * 5 3 2 37 37 H 1.08995 * 109.70486 * 294.44983 * 5 3 2 38 38 H 1.08002 * 125.99302 * 0.02562 * 10 9 7 39 39 H 1.09002 * 112.85210 * 323.49132 * 13 12 11 40 40 H 1.09000 * 113.61061 * 254.52939 * 14 13 12 41 41 H 1.09001 * 113.61371 * 25.34181 * 14 13 12 42 42 H 1.09003 * 113.61294 * 89.15986 * 15 14 13 43 43 H 1.08999 * 113.61077 * 220.05616 * 15 14 13 44 44 H 1.09001 * 113.61290 * 334.56394 * 16 13 12 45 45 H 1.09001 * 113.61719 * 105.38306 * 16 13 12 46 46 H 1.08004 * 126.29034 * 180.21463 * 17 12 11 47 47 H 1.08997 * 109.58888 * 173.14375 * 18 6 5 48 48 H 1.09003 * 109.58324 * 293.56728 * 18 6 5 49 49 H 1.08996 * 109.56518 * 185.55239 * 19 18 6 50 50 H 1.09002 * 109.35987 * 65.50256 * 19 18 6 51 51 H 0.97006 * 119.99760 * 95.06502 * 22 20 19 52 52 H 0.96994 * 119.99172 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9816 -0.8423 5 6 1.6351 2.1280 1.3088 6 7 2.2416 3.4656 1.3494 7 6 1.4815 4.5580 1.5630 8 8 0.2932 4.4368 1.7911 9 6 2.0908 5.8998 1.5199 10 6 3.3282 6.2776 2.0875 11 7 3.5197 7.5426 1.8326 12 7 2.4257 8.0296 1.1085 13 6 2.2578 9.4051 0.6332 14 6 2.7309 9.6189 -0.8143 15 6 1.4974 10.5174 -1.0043 16 6 0.8373 9.7143 0.1313 17 6 1.5589 7.0223 0.9177 18 6 3.6914 3.5904 1.1467 19 6 4.0741 2.8879 -0.1547 20 6 3.5656 1.4449 -0.1216 21 1 3.8574 0.9361 -1.0404 22 7 4.1480 0.7484 1.0281 23 6 5.3861 0.1726 0.9246 24 1 5.9330 0.2316 -0.0049 25 6 5.9382 -0.4868 2.0141 26 7 5.2714 -0.5591 3.1467 27 14 7.6268 -1.2729 1.8726 28 1 8.6664 -0.2853 2.2589 29 1 7.7022 -2.4496 2.7753 30 1 7.8543 -1.7086 0.4713 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.9908 1.5396 2.1547 37 1 0.5498 2.2172 1.3565 38 1 4.0001 5.6314 2.6328 39 1 2.6457 10.1452 1.3332 40 1 3.6772 10.1547 -0.8897 41 1 2.7083 8.7126 -1.4194 42 1 1.6759 11.5629 -0.7531 43 1 1.0096 10.3906 -1.9707 44 1 0.2956 8.8344 -0.2157 45 1 0.2544 10.3259 0.8200 46 1 0.6180 7.0798 0.3904 47 1 3.9623 4.6443 1.0848 48 1 4.2182 3.1238 1.9791 49 1 5.1584 2.8891 -0.2649 50 1 3.6219 3.4138 -0.9957 51 1 3.6566 0.6952 1.8628 52 1 5.6571 -1.0202 3.9078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037848172.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:22 Heat of formation + Delta-G solvation = 76.798547 kcal Electronic energy + Delta-G solvation = -31536.228985 eV Core-core repulsion = 27538.431102 eV Total energy + Delta-G solvation = -3997.797883 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.66010 -39.78486 -38.74231 -37.51988 -34.37129 -33.71118 -31.97213 -31.61159 -30.44886 -29.36949 -28.41812 -26.35535 -26.01360 -24.92872 -23.74973 -23.49089 -22.22923 -21.47516 -20.68179 -19.85111 -19.43693 -18.44379 -17.50740 -17.29903 -16.29577 -16.21499 -15.66500 -15.17127 -14.98884 -14.60040 -14.42426 -14.31118 -13.91832 -13.70000 -13.43867 -13.34326 -13.22101 -13.01659 -12.92663 -12.75967 -12.47445 -12.45435 -12.14504 -11.85008 -11.65731 -11.34473 -11.21544 -11.17652 -11.02150 -10.93712 -10.87573 -10.75052 -10.65138 -10.25402 -10.20581 -10.14009 -9.73811 -9.58317 -9.53437 -9.47605 -8.88831 -8.63244 -8.08878 -6.93995 -5.76297 -3.04327 1.57767 2.19840 2.28745 3.22882 3.43233 3.49179 3.50478 3.56807 3.75477 3.94225 4.21202 4.25322 4.57522 4.59880 4.66089 4.95528 5.08305 5.09631 5.11511 5.20866 5.29981 5.32889 5.36159 5.39226 5.41488 5.50468 5.58572 5.60897 5.65974 5.67834 5.74635 5.76794 5.89185 5.91015 5.97906 6.16017 6.21530 6.27306 6.37490 6.41496 6.45432 6.48840 6.62018 6.72576 6.75271 6.77086 6.83683 7.00097 7.09516 7.51901 7.71227 7.85190 8.42384 8.54619 9.54004 10.11224 10.46447 11.46112 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.002873 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.221891 B = 9742.398481 C =10969.037816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.120 3.880 6 N -0.593 5.593 7 C 0.591 3.409 8 O -0.559 6.559 9 C -0.277 4.277 10 C 0.081 3.919 11 N -0.298 5.298 12 N -0.354 5.354 13 C 0.134 3.866 14 C -0.147 4.147 15 C -0.137 4.137 16 C -0.148 4.148 17 C 0.110 3.890 18 C 0.106 3.894 19 C -0.148 4.148 20 C 0.179 3.821 21 H 0.049 0.951 22 N -0.718 5.718 23 C -0.235 4.235 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.194 0.806 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.180 0.820 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.073 0.927 50 H 0.046 0.954 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.149 19.528 -8.448 23.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.002 4.002 6 N -0.324 5.324 7 C 0.379 3.621 8 O -0.438 6.438 9 C -0.292 4.292 10 C -0.106 4.106 11 N -0.117 5.117 12 N -0.133 5.133 13 C 0.032 3.968 14 C -0.186 4.186 15 C -0.175 4.175 16 C -0.186 4.186 17 C -0.039 4.039 18 C -0.016 4.016 19 C -0.190 4.190 20 C 0.068 3.932 21 H 0.067 0.933 22 N -0.361 5.361 23 C -0.367 4.367 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.219 1.219 29 H -0.219 1.219 30 H -0.209 1.209 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.210 0.790 39 H 0.142 0.858 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.112 0.888 45 H 0.103 0.897 46 H 0.197 0.803 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.091 0.909 50 H 0.065 0.935 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.810 20.501 -8.251 23.790 hybrid contribution 0.522 -1.201 0.174 1.321 sum -8.288 19.300 -8.077 22.504 Atomic orbital electron populations 1.21853 0.96859 1.00988 1.01348 1.21416 0.94237 0.95797 1.03338 1.21739 0.97367 0.96055 0.97067 0.91686 1.21675 0.98709 0.81569 0.98214 1.47933 1.08713 1.06213 1.69536 1.17293 0.85442 0.83018 0.76300 1.90727 1.15630 1.86816 1.50672 1.20245 0.99463 0.95295 1.14149 1.24200 0.95434 0.92578 0.98349 1.77177 1.07725 1.12084 1.14716 1.48508 1.14727 1.08579 1.41454 1.23080 0.98454 0.79464 0.95790 1.23445 0.99351 1.00936 0.94859 1.22734 0.96624 0.98870 0.99231 1.23476 0.94991 1.01488 0.98646 1.22647 0.95938 0.86614 0.98751 1.21899 0.79225 1.00677 0.99811 1.22430 1.01644 0.99152 0.95742 1.20217 0.89761 0.90670 0.92509 0.93284 1.42471 1.18978 1.63992 1.10611 1.19205 0.93554 1.26896 0.97015 0.91333 1.24692 0.98470 1.01562 0.96067 1.69650 1.37963 1.48163 1.02243 0.86254 0.84535 0.78764 0.76991 1.21864 1.21935 1.20918 0.93214 0.92728 0.93439 0.92102 0.90466 0.90764 0.89630 0.78984 0.85810 0.90058 0.89151 0.89259 0.90029 0.88751 0.89661 0.80312 0.90365 0.89790 0.90884 0.93547 0.78065 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.16 0.36 -1.74 16 2 C -0.11 -1.76 5.19 -26.73 -0.14 -1.90 16 3 C -0.10 -1.68 2.14 -90.50 -0.19 -1.87 16 4 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.12 2.07 5.02 -3.71 -0.02 2.05 16 6 N -0.59 -9.91 2.98 -174.30 -0.52 -10.43 16 7 C 0.59 10.05 7.59 -12.52 -0.09 9.95 16 8 O -0.56 -10.95 16.52 5.28 0.09 -10.86 16 9 C -0.28 -4.01 5.33 -105.07 -0.56 -4.57 16 10 C 0.08 1.12 9.57 -16.98 -0.16 0.96 16 11 N -0.30 -4.07 12.50 30.86 0.39 -3.68 16 12 N -0.35 -3.98 3.77 -53.52 -0.20 -4.18 16 13 C 0.13 1.01 5.03 -67.11 -0.34 0.67 16 14 C -0.15 -0.93 7.87 -25.92 -0.20 -1.13 16 15 C -0.14 -0.59 8.10 -25.83 -0.21 -0.79 16 16 C -0.15 -0.79 7.42 -25.82 -0.19 -0.98 16 17 C 0.11 1.32 10.69 -16.56 -0.18 1.15 16 18 C 0.11 1.73 5.42 -3.94 -0.02 1.71 16 19 C -0.15 -2.50 5.76 -26.83 -0.15 -2.65 16 20 C 0.18 3.33 2.53 -67.89 -0.17 3.16 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.72 -16.39 3.72 -53.39 -0.20 -16.59 16 23 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 24 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 27 Si 0.90 21.82 29.55 -169.99 -5.02 16.80 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 30 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.75 6.70 -51.93 -0.35 0.41 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.44 7.69 -51.93 -0.40 1.04 16 36 H 0.07 1.42 6.64 -51.92 -0.34 1.07 16 37 H 0.09 1.48 5.74 -51.93 -0.30 1.18 16 38 H 0.19 2.43 7.10 -52.49 -0.37 2.06 16 39 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.09 0.51 6.29 -51.93 -0.33 0.19 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.18 1.71 6.65 -52.48 -0.35 1.36 16 47 H 0.08 1.14 4.16 -51.93 -0.22 0.92 16 48 H 0.08 1.58 7.74 -51.93 -0.40 1.18 16 49 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 50 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.38 9.43 5.94 -40.82 -0.24 9.19 16 52 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 402.76 15.07 6.07 6.07 Total: -1.00 -31.58 402.76 -9.54 -41.11 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -8.34 Total: 10.72 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.52 Total: -2.66 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.19 Total: -61.17 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.58 -9.54 -41.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037848172.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.911 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds