Wall clock time and date at job start Wed Apr 1 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47095 * 2 1 4 4 H 1.09000 * 109.50100 * 55.06687 * 3 2 1 5 5 C 1.53192 * 109.49922 * 294.99695 * 3 2 1 6 6 N 1.46924 * 108.77586 * 185.38239 * 5 3 2 7 7 C 1.34786 * 120.62785 * 233.33662 * 6 5 3 8 8 O 1.21602 * 119.99783 * 355.63831 * 7 6 5 9 9 C 1.47425 * 119.99735 * 175.64265 * 7 6 5 10 10 C 1.38048 * 126.41983 * 50.46085 * 9 7 6 11 11 N 1.34256 * 107.41665 * 179.97438 * 10 9 7 12 12 C 1.46498 * 125.74892 * 179.97438 * 11 10 9 13 13 N 1.39927 * 108.49372 * 0.02562 * 11 10 9 14 14 C 1.30450 * 108.90019 * 359.75205 * 13 11 10 15 15 C 1.50693 * 125.98944 * 180.26240 * 14 13 11 16 16 C 1.53001 * 117.50154 * 8.76598 * 15 14 13 17 17 C 1.52999 * 60.00161 * 252.50933 * 16 15 14 18 18 C 1.46922 * 118.74322 * 53.61177 * 6 5 3 19 19 C 1.53190 * 108.77215 * 306.39242 * 18 6 5 20 20 C 1.53037 * 109.31764 * 54.63263 * 19 18 6 21 21 H 1.09001 * 109.46397 * 178.61357 * 20 19 18 22 22 N 1.46506 * 109.44612 * 58.64488 * 20 19 18 23 23 C 1.36935 * 119.99664 * 84.94619 * 22 20 19 24 24 H 1.07999 * 120.00112 * 359.97438 * 23 22 20 25 25 C 1.38811 * 119.99924 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99814 * 179.97438 * 25 23 22 27 27 Si 1.86804 * 120.00124 * 359.97438 * 25 23 22 28 28 H 1.48497 * 109.46976 * 89.99732 * 27 25 23 29 29 H 1.48499 * 109.46863 * 210.00055 * 27 25 23 30 30 H 1.48503 * 109.46728 * 330.00193 * 27 25 23 31 31 H 1.09001 * 109.47297 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47411 * 300.00027 * 1 2 3 33 33 H 1.08999 * 109.47464 * 60.00053 * 1 2 3 34 34 H 1.09006 * 109.47407 * 239.99525 * 2 1 3 35 35 H 1.09002 * 109.47195 * 120.00387 * 2 1 3 36 36 H 1.09004 * 109.58164 * 65.59652 * 5 3 2 37 37 H 1.09001 * 109.58993 * 305.17179 * 5 3 2 38 38 H 1.08003 * 126.28839 * 359.97438 * 10 9 7 39 39 H 1.09004 * 109.47411 * 90.00231 * 12 11 10 40 40 H 1.09003 * 109.47110 * 210.00320 * 12 11 10 41 41 H 1.09004 * 109.47351 * 330.00293 * 12 11 10 42 42 H 1.09004 * 115.55152 * 154.47866 * 15 14 13 43 43 H 1.09000 * 117.49724 * 359.97438 * 16 15 14 44 44 H 1.09001 * 117.49866 * 145.02597 * 16 15 14 45 45 H 1.09000 * 117.50268 * 252.51137 * 17 16 15 46 46 H 1.09000 * 117.50239 * 107.48136 * 17 16 15 47 47 H 1.08999 * 109.58514 * 66.17846 * 18 6 5 48 48 H 1.08996 * 109.58895 * 186.60657 * 18 6 5 49 49 H 1.09002 * 109.49973 * 294.67549 * 19 18 6 50 50 H 1.08998 * 109.49760 * 174.58736 * 19 18 6 51 51 H 0.97000 * 120.00041 * 264.93615 * 22 20 19 52 52 H 0.97001 * 119.99792 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6065 1.9816 0.8423 5 6 1.6350 2.1280 -1.3088 6 7 2.2409 3.4659 -1.3490 7 6 1.4812 4.5574 -1.5684 8 8 0.2966 4.4343 -1.8141 9 6 2.0864 5.9004 -1.5107 10 6 3.2289 6.3134 -2.1664 11 7 3.4325 7.6013 -1.8464 12 6 4.5373 8.4372 -2.3228 13 7 2.4124 8.0101 -0.9804 14 6 1.6030 7.0074 -0.7777 15 6 0.3699 7.0257 0.0884 16 6 -0.0902 8.3790 0.6340 17 6 0.5529 7.3550 1.5713 18 6 3.6914 3.5908 -1.1515 19 6 4.0733 2.8889 0.1555 20 6 3.5655 1.4456 0.1221 21 1 3.8574 0.9366 1.0407 22 7 4.1486 0.7499 -1.0279 23 6 5.3869 0.1747 -0.9242 24 1 5.9339 0.2342 0.0051 25 6 5.9392 -0.4850 -2.0136 26 7 7.1296 -1.0375 -1.9140 27 14 4.9928 -0.5885 -3.6208 28 1 5.3327 0.5802 -4.4715 29 1 5.3584 -1.8406 -4.3307 30 1 3.5350 -0.5875 -3.3377 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 0.5496 2.2168 -1.3541 37 1 1.9912 1.5400 -2.1547 38 1 3.8454 5.7112 -2.8172 39 1 4.2441 8.9346 -3.2474 40 1 4.7781 9.1858 -1.5680 41 1 5.4117 7.8131 -2.5075 42 1 -0.4003 6.3006 -0.1747 43 1 0.4993 9.2561 0.3668 44 1 -1.1633 8.5446 0.7297 45 1 -0.0970 6.8468 2.2837 46 1 1.5653 7.5583 1.9204 47 1 4.2153 3.1222 -1.9846 48 1 3.9628 4.6448 -1.0930 49 1 3.6207 3.4145 0.9964 50 1 5.1576 2.8906 0.2660 51 1 3.6574 0.6967 -1.8626 52 1 7.5157 -1.4981 -2.6754 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037852753.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:24 Heat of formation + Delta-G solvation = 82.613701 kcal Electronic energy + Delta-G solvation = -32148.058242 eV Core-core repulsion = 28150.512523 eV Total energy + Delta-G solvation = -3997.545719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.64701 -39.77535 -37.75422 -37.24430 -34.50407 -33.86214 -33.18409 -31.76003 -30.70502 -29.81265 -28.63030 -27.51841 -25.37746 -23.96886 -23.37139 -23.14429 -22.52969 -22.03442 -20.80304 -20.06047 -19.22634 -18.40084 -17.89065 -17.07971 -16.54347 -15.80658 -15.68193 -15.57175 -15.04439 -14.77217 -14.59434 -14.39961 -14.10446 -13.69060 -13.51828 -13.33670 -13.24387 -13.01357 -12.98811 -12.93377 -12.46358 -12.41370 -11.97394 -11.89990 -11.67523 -11.59621 -11.26572 -11.23050 -11.07519 -10.95745 -10.92675 -10.79640 -10.47039 -10.34897 -10.30760 -10.22424 -9.81785 -9.67923 -9.56918 -9.29772 -8.96586 -8.64966 -8.26978 -7.29800 -5.81357 -3.16267 1.49385 2.10534 2.16865 3.02653 3.31267 3.34919 3.37849 3.41553 3.82920 4.14681 4.37541 4.53926 4.62914 4.77785 4.82342 4.84700 4.88806 5.03976 5.08965 5.10761 5.15005 5.27905 5.35433 5.39816 5.46402 5.50841 5.51605 5.56670 5.59395 5.68951 5.69861 5.71021 5.80600 5.91526 5.99853 6.04665 6.06122 6.09670 6.22270 6.29670 6.31182 6.35052 6.46990 6.55455 6.59396 6.65660 6.69933 6.78376 6.93737 7.45884 7.68837 7.95691 8.37918 8.41398 9.16536 9.89180 10.09477 11.37128 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.003711 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.078243 B = 7543.553512 C = 8889.530110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.120 3.880 6 N -0.599 5.599 7 C 0.595 3.405 8 O -0.549 6.549 9 C -0.269 4.269 10 C 0.095 3.905 11 N -0.363 5.363 12 C 0.098 3.902 13 N -0.299 5.299 14 C 0.155 3.845 15 C -0.085 4.085 16 C -0.164 4.164 17 C -0.161 4.161 18 C 0.109 3.891 19 C -0.148 4.148 20 C 0.185 3.815 21 H 0.059 0.941 22 N -0.744 5.744 23 C -0.239 4.239 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.934 5.934 27 Si 0.877 3.123 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.185 0.815 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.132 0.868 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.052 0.948 50 H 0.077 0.923 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.908 17.438 3.079 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.091 0.909 5 C -0.003 4.003 6 N -0.331 5.331 7 C 0.383 3.617 8 O -0.427 6.427 9 C -0.284 4.284 10 C -0.055 4.055 11 N -0.141 5.141 12 C -0.043 4.043 13 N -0.120 5.120 14 C -0.011 4.011 15 C -0.105 4.105 16 C -0.202 4.202 17 C -0.199 4.199 18 C -0.014 4.014 19 C -0.189 4.189 20 C 0.075 3.925 21 H 0.077 0.923 22 N -0.387 5.387 23 C -0.369 4.369 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.582 5.582 27 Si 0.708 3.292 28 H -0.212 1.212 29 H -0.218 1.218 30 H -0.203 1.203 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.202 0.798 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.149 0.851 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.114 0.886 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.071 0.929 50 H 0.096 0.904 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.892 18.590 3.214 21.301 hybrid contribution -0.288 -1.052 -1.633 1.964 sum -10.180 17.537 1.581 20.339 Atomic orbital electron populations 1.21855 0.96613 1.01141 1.01510 1.21432 0.94505 0.95722 1.03272 1.21798 0.97376 0.96154 0.97287 0.90944 1.21667 0.99111 0.81598 0.97891 1.48022 1.08687 1.06270 1.70075 1.17292 0.85523 0.82807 0.76078 1.90723 1.15776 1.86585 1.49655 1.20068 1.00788 0.96420 1.11147 1.23082 0.96820 0.86195 0.99437 1.48193 1.21438 1.08783 1.35724 1.21980 0.85996 0.95542 1.00755 1.77041 1.00001 1.22541 1.12462 1.21259 0.94653 0.89350 0.95872 1.20424 0.94956 1.01370 0.93754 1.22971 1.01156 0.92914 1.03114 1.22996 1.02614 1.02845 0.91454 1.21867 0.79183 1.00617 0.99714 1.22467 1.02050 0.98665 0.95675 1.20188 0.89480 0.90704 0.92102 0.92282 1.42845 1.19520 1.65889 1.10475 1.19061 0.91807 1.26814 0.99189 0.89194 1.24628 0.96447 1.00335 0.97517 1.69692 1.16295 1.41415 1.30780 0.86675 0.79736 0.77430 0.85398 1.21237 1.21766 1.20312 0.93094 0.93104 0.92817 0.91128 0.91571 0.89209 0.91717 0.79827 0.90395 0.88930 0.88884 0.85055 0.88108 0.88301 0.88068 0.88637 0.90466 0.90671 0.92929 0.90447 0.80595 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.67 37.15 0.36 -1.59 16 2 C -0.11 -1.66 5.19 -26.74 -0.14 -1.80 16 3 C -0.11 -1.63 2.14 -90.50 -0.19 -1.82 16 4 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 5 C 0.12 1.90 5.01 -3.71 -0.02 1.89 16 6 N -0.60 -9.33 2.97 -174.04 -0.52 -9.85 16 7 C 0.60 9.67 7.36 -12.52 -0.09 9.58 16 8 O -0.55 -10.31 15.94 5.28 0.08 -10.23 16 9 C -0.27 -3.86 5.14 -105.07 -0.54 -4.41 16 10 C 0.09 1.11 9.13 -16.56 -0.15 0.96 16 11 N -0.36 -3.97 3.98 -67.59 -0.27 -4.24 16 12 C 0.10 0.61 11.44 59.85 0.68 1.30 16 13 N -0.30 -3.95 12.08 33.89 0.41 -3.54 16 14 C 0.16 2.16 6.80 -82.02 -0.56 1.60 16 15 C -0.08 -1.05 6.06 -91.77 -0.56 -1.61 16 16 C -0.16 -1.63 10.14 -26.73 -0.27 -1.90 16 17 C -0.16 -1.63 10.23 -26.73 -0.27 -1.90 16 18 C 0.11 1.62 5.64 -3.71 -0.02 1.60 16 19 C -0.15 -2.34 5.78 -26.61 -0.15 -2.49 16 20 C 0.18 3.25 2.53 -67.88 -0.17 3.08 16 21 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 22 N -0.74 -15.85 3.52 -53.38 -0.19 -16.04 16 23 C -0.24 -6.22 10.41 -15.06 -0.16 -6.37 16 24 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 25 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 26 N -0.93 -28.19 13.97 55.49 0.78 -27.42 16 27 Si 0.88 21.22 27.74 -169.99 -4.71 16.50 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 30 H -0.28 -6.32 6.52 56.52 0.37 -5.96 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.68 6.70 -51.93 -0.35 0.34 16 34 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 1.44 5.75 -51.93 -0.30 1.14 16 37 H 0.06 1.11 6.64 -51.93 -0.34 0.76 16 38 H 0.18 1.70 7.62 -52.48 -0.40 1.30 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.13 1.75 7.55 -51.93 -0.39 1.36 16 43 H 0.10 1.04 7.90 -51.93 -0.41 0.63 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.08 1.28 7.74 -51.93 -0.40 0.87 16 48 H 0.08 0.99 4.58 -51.93 -0.24 0.75 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 51 H 0.36 7.75 3.81 -40.82 -0.16 7.59 16 52 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 407.24 15.07 6.14 6.14 Total: -1.00 -32.90 407.24 -9.10 -42.00 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -8.47 Total: 10.48 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.35 Total: -3.81 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.21 Total: -61.09 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.50 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.90 -9.10 -42.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037852753.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.617 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds