Wall clock time and date at job start Wed Apr 1 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47170 * 2 1 4 4 H 1.08994 * 109.50040 * 55.05861 * 3 2 1 5 5 C 1.53196 * 109.49462 * 294.99511 * 3 2 1 6 6 N 1.46932 * 108.77285 * 185.41419 * 5 3 2 7 7 C 1.34774 * 120.62956 * 233.63268 * 6 5 3 8 8 O 1.21605 * 120.00132 * 355.71546 * 7 6 5 9 9 C 1.47435 * 119.99857 * 175.72157 * 7 6 5 10 10 C 1.38040 * 126.41559 * 50.04622 * 9 7 6 11 11 N 1.34256 * 107.41580 * 179.97438 * 10 9 7 12 12 C 1.46509 * 125.75268 * 180.02562 * 11 10 9 13 13 N 1.39930 * 108.49558 * 359.97438 * 11 10 9 14 14 C 1.30453 * 108.89244 * 359.75511 * 13 11 10 15 15 C 1.50704 * 125.98694 * 180.25813 * 14 13 11 16 16 C 1.53004 * 117.49733 * 8.89178 * 15 14 13 17 17 C 1.53001 * 117.49989 * 300.23420 * 15 14 13 18 18 C 1.46926 * 118.73715 * 53.61057 * 6 5 3 19 19 C 1.53193 * 108.77797 * 306.38891 * 18 6 5 20 20 C 1.53036 * 109.49810 * 175.15929 * 3 2 1 21 21 H 1.08999 * 109.46395 * 61.29272 * 20 3 2 22 22 N 1.46499 * 109.46203 * 301.33667 * 20 3 2 23 23 C 1.36935 * 120.00364 * 154.99983 * 22 20 3 24 24 H 1.08004 * 119.99947 * 0.02562 * 23 22 20 25 25 C 1.38816 * 120.00269 * 179.97438 * 23 22 20 26 26 N 1.31614 * 119.99665 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00203 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47094 * 90.00147 * 27 25 23 29 29 H 1.48499 * 109.47107 * 210.00188 * 27 25 23 30 30 H 1.48503 * 109.47138 * 330.00284 * 27 25 23 31 31 H 1.08992 * 109.47544 * 300.00553 * 1 2 3 32 32 H 1.08994 * 109.47040 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46799 * 60.00528 * 1 2 3 34 34 H 1.09001 * 109.46799 * 119.99472 * 2 1 3 35 35 H 1.08994 * 109.47119 * 239.99749 * 2 1 3 36 36 H 1.08992 * 109.58923 * 305.20162 * 5 3 2 37 37 H 1.09001 * 109.58442 * 65.48875 * 5 3 2 38 38 H 1.08004 * 126.28934 * 359.93704 * 10 9 7 39 39 H 1.09003 * 109.46500 * 90.00220 * 12 11 10 40 40 H 1.08998 * 109.46825 * 209.99951 * 12 11 10 41 41 H 1.08997 * 109.47172 * 330.00077 * 12 11 10 42 42 H 1.08998 * 115.55187 * 154.56214 * 15 14 13 43 43 H 1.08994 * 117.49857 * 359.97438 * 16 15 14 44 44 H 1.08999 * 117.49563 * 145.01869 * 16 15 14 45 45 H 1.08996 * 117.49709 * 214.98082 * 17 15 14 46 46 H 1.08999 * 117.49788 * 359.97438 * 17 15 14 47 47 H 1.09000 * 109.59016 * 66.17975 * 18 6 5 48 48 H 1.09007 * 109.58043 * 186.46096 * 18 6 5 49 49 H 1.09003 * 109.49740 * 174.58959 * 19 18 6 50 50 H 1.09003 * 109.49503 * 294.65577 * 19 18 6 51 51 H 0.97004 * 120.00061 * 334.99963 * 22 20 3 52 52 H 0.97002 * 119.99972 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 0.8422 5 6 1.6351 2.1279 -1.3089 6 7 2.2416 3.4656 -1.3495 7 6 1.4816 4.5579 -1.5630 8 8 0.2955 4.4362 -1.8017 9 6 2.0884 5.9004 -1.5073 10 6 3.2316 6.3109 -2.1632 11 7 3.4366 7.5991 -1.8455 12 6 4.5420 8.4332 -2.3236 13 7 2.4158 8.0111 -0.9816 14 6 1.6048 7.0097 -0.7781 15 6 0.3705 7.0314 0.0863 16 6 -0.0901 8.3868 0.6262 17 6 0.5518 7.3654 1.5684 18 6 3.6923 3.5897 -1.1523 19 6 4.0742 2.8879 0.1548 20 6 3.5655 1.4449 0.1217 21 1 3.9990 0.9267 -0.7336 22 7 3.9577 0.7608 1.3564 23 6 5.1961 0.1849 1.4564 24 1 5.8839 0.2355 0.6252 25 6 5.5679 -0.4628 2.6265 26 7 4.7303 -0.5231 3.6399 27 14 7.2569 -1.2489 2.7627 28 1 8.2230 -0.2566 3.2987 29 1 7.1873 -2.4163 3.6779 30 1 7.7033 -1.6988 1.4197 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5138 0.8901 35 1 1.8933 -0.5138 -0.8899 36 1 1.9908 1.5396 -2.1547 37 1 0.5496 2.2150 -1.3551 38 1 3.8481 5.7065 -2.8121 39 1 4.2489 8.9293 -3.2489 40 1 4.7837 9.1829 -1.5702 41 1 5.4158 7.8081 -2.5075 42 1 -0.3996 6.3058 -0.1755 43 1 0.4998 9.2628 0.3566 44 1 -1.1633 8.5528 0.7198 45 1 -0.0994 6.8598 2.2815 46 1 1.5638 7.5690 1.9183 47 1 4.2158 3.1207 -1.9853 48 1 3.9645 4.6438 -1.0966 49 1 5.1586 2.8891 0.2650 50 1 3.6224 3.4142 0.9957 51 1 3.3402 0.7157 2.1031 52 1 4.9900 -0.9760 4.4575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037852762.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:30 Heat of formation + Delta-G solvation = 76.929562 kcal Electronic energy + Delta-G solvation = -31634.796937 eV Core-core repulsion = 27637.004735 eV Total energy + Delta-G solvation = -3997.792202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.66657 -39.67840 -37.61732 -37.18773 -34.66196 -33.78686 -33.19967 -31.69358 -30.73423 -29.45319 -28.51270 -27.49057 -25.22616 -23.90428 -23.43153 -22.96238 -22.44367 -21.77919 -20.76289 -20.10188 -19.49163 -18.88909 -17.26821 -17.02977 -16.58354 -15.82535 -15.68730 -15.55674 -14.97260 -14.88997 -14.58390 -14.10536 -13.91616 -13.72260 -13.42118 -13.27394 -13.22207 -13.04734 -12.99032 -12.93789 -12.51911 -12.09931 -11.94305 -11.79823 -11.60944 -11.57000 -11.25789 -11.15782 -10.93587 -10.92356 -10.83404 -10.67030 -10.42838 -10.31216 -10.20605 -10.12203 -9.75764 -9.67522 -9.57347 -9.30688 -8.90048 -8.67665 -8.35495 -6.95778 -5.77742 -3.06136 1.45858 2.10016 2.14179 2.97848 3.35239 3.41145 3.46506 3.48365 3.87121 4.13008 4.35764 4.57090 4.57574 4.77790 4.80121 4.83787 4.93168 5.03963 5.08275 5.12438 5.26606 5.34479 5.37566 5.40545 5.49915 5.56916 5.57917 5.58897 5.62995 5.72384 5.74722 5.76709 5.93883 6.05408 6.06316 6.09670 6.16909 6.19245 6.29925 6.36599 6.40298 6.43635 6.49609 6.59908 6.65344 6.73751 6.85898 6.99465 7.09228 7.44104 7.62872 7.67940 8.37714 8.40543 9.51956 10.10094 10.44996 11.44736 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010838 B = 0.003110 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.989353 B = 9001.875797 C = 9873.616487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.121 3.879 6 N -0.600 5.600 7 C 0.596 3.404 8 O -0.546 6.546 9 C -0.268 4.268 10 C 0.092 3.908 11 N -0.364 5.364 12 C 0.099 3.901 13 N -0.298 5.298 14 C 0.157 3.843 15 C -0.087 4.087 16 C -0.164 4.164 17 C -0.160 4.160 18 C 0.102 3.898 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.047 0.953 22 N -0.720 5.720 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.184 0.816 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.132 0.868 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.065 0.935 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.059 0.941 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 16.149 -12.485 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.001 4.001 6 N -0.332 5.332 7 C 0.384 3.616 8 O -0.424 6.424 9 C -0.283 4.283 10 C -0.058 4.058 11 N -0.142 5.142 12 C -0.042 4.042 13 N -0.119 5.119 14 C -0.010 4.010 15 C -0.107 4.107 16 C -0.202 4.202 17 C -0.198 4.198 18 C -0.021 4.021 19 C -0.191 4.191 20 C 0.074 3.926 21 H 0.065 0.935 22 N -0.360 5.360 23 C -0.369 4.369 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.219 1.219 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.201 0.799 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.150 0.850 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.114 0.886 47 H 0.083 0.917 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.078 0.922 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.495 17.302 -12.436 21.776 hybrid contribution 1.022 -1.290 0.153 1.653 sum -3.473 16.012 -12.283 20.477 Atomic orbital electron populations 1.21843 0.96811 1.00998 1.01344 1.21447 0.94378 0.95721 1.03409 1.21778 0.97582 0.96211 0.96840 0.91178 1.21732 0.99433 0.81261 0.97681 1.48022 1.08406 1.06495 1.70292 1.17290 0.85560 0.82783 0.75978 1.90732 1.15562 1.86557 1.49585 1.20080 1.00731 0.96411 1.11104 1.23009 0.96863 0.86287 0.99665 1.48201 1.21435 1.08744 1.35842 1.21966 0.85913 0.95586 1.00754 1.77071 0.99873 1.22540 1.12424 1.21295 0.94632 0.89319 0.95714 1.20441 0.94897 1.01354 0.93979 1.22982 1.01164 0.92824 1.03190 1.23020 1.02728 1.02680 0.91378 1.21999 0.79656 1.01378 0.99061 1.22655 1.01926 0.99217 0.95293 1.20179 0.90832 0.90465 0.91136 0.93512 1.42412 1.16441 1.64417 1.12772 1.19205 0.91806 1.27285 0.98562 0.91305 1.24714 0.98060 1.01594 0.96452 1.69656 1.35210 1.48398 1.04694 0.86245 0.84228 0.78767 0.77262 1.21856 1.21840 1.20822 0.92982 0.93222 0.93174 0.89840 0.92495 0.91770 0.89105 0.79934 0.90417 0.88911 0.89009 0.85015 0.88145 0.88285 0.87942 0.88581 0.91704 0.90352 0.90855 0.92207 0.78197 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 37.16 0.36 -1.76 16 2 C -0.11 -1.80 5.31 -26.73 -0.14 -1.94 16 3 C -0.10 -1.71 1.93 -90.50 -0.17 -1.88 16 4 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 5 C 0.12 1.78 5.31 -3.71 -0.02 1.76 16 6 N -0.60 -8.67 2.97 -174.02 -0.52 -9.19 16 7 C 0.60 9.28 7.37 -12.52 -0.09 9.19 16 8 O -0.55 -9.97 15.91 5.27 0.08 -9.88 16 9 C -0.27 -3.70 5.15 -105.07 -0.54 -4.24 16 10 C 0.09 0.97 9.13 -16.56 -0.15 0.82 16 11 N -0.36 -3.75 3.98 -67.59 -0.27 -4.02 16 12 C 0.10 0.54 11.44 59.85 0.68 1.22 16 13 N -0.30 -3.91 12.08 33.90 0.41 -3.50 16 14 C 0.16 2.20 6.80 -82.02 -0.56 1.64 16 15 C -0.09 -1.12 6.05 -91.77 -0.55 -1.67 16 16 C -0.16 -1.72 10.14 -26.69 -0.27 -1.99 16 17 C -0.16 -1.80 10.24 -26.69 -0.27 -2.07 16 18 C 0.10 1.34 5.89 -3.71 -0.02 1.32 16 19 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 20 C 0.18 3.43 2.19 -67.89 -0.15 3.28 16 21 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 22 N -0.72 -17.05 4.33 -53.39 -0.23 -17.28 16 23 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 24 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 25 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 27 Si 0.90 21.84 29.55 -169.99 -5.02 16.82 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.65 6.69 -51.93 -0.35 0.30 16 34 H 0.08 1.61 7.22 -51.93 -0.37 1.24 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.39 5.75 -51.93 -0.30 1.09 16 38 H 0.18 1.30 7.60 -52.48 -0.40 0.91 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.13 1.82 7.52 -51.93 -0.39 1.43 16 43 H 0.10 1.08 7.90 -51.93 -0.41 0.67 16 44 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.08 0.92 4.56 -51.93 -0.24 0.68 16 49 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 51 H 0.38 9.88 7.51 -40.82 -0.31 9.57 16 52 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 413.87 15.07 6.24 6.24 Total: -1.00 -33.11 413.87 -9.53 -42.64 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -8.65 Total: 10.75 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.30 Total: -5.84 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 0.12 Total: -60.72 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.11 -9.53 -42.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037852762.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.569 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds