Wall clock time and date at job start Wed Apr 1 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47322 * 2 1 4 4 H 1.08996 * 109.52635 * 305.08450 * 3 2 1 5 5 C 1.53199 * 109.49877 * 65.16107 * 3 2 1 6 6 N 1.46923 * 108.77762 * 174.58760 * 5 3 2 7 7 C 1.34771 * 120.63423 * 126.37271 * 6 5 3 8 8 O 1.21604 * 119.99640 * 354.51126 * 7 6 5 9 9 C 1.47424 * 120.00594 * 174.51321 * 7 6 5 10 10 C 1.38046 * 126.41389 * 319.82823 * 9 7 6 11 11 N 1.34260 * 107.41796 * 179.97438 * 10 9 7 12 12 C 1.46500 * 125.75396 * 179.97438 * 11 10 9 13 13 N 1.39937 * 108.49165 * 0.02562 * 11 10 9 14 14 C 1.30452 * 108.89288 * 359.73235 * 13 11 10 15 15 C 1.50703 * 125.98374 * 180.26410 * 14 13 11 16 16 C 1.52999 * 117.49948 * 8.79439 * 15 14 13 17 17 C 1.52997 * 60.00227 * 252.50958 * 16 15 14 18 18 C 1.46926 * 118.73694 * 306.39242 * 6 5 3 19 19 C 1.53187 * 108.77774 * 53.60872 * 18 6 5 20 20 C 1.53036 * 109.50129 * 184.99699 * 3 2 1 21 21 H 1.09006 * 109.44758 * 58.67078 * 20 3 2 22 22 N 1.46501 * 109.46460 * 298.70880 * 20 3 2 23 23 C 1.36928 * 120.00390 * 154.92625 * 22 20 3 24 24 H 1.08007 * 119.99947 * 0.02562 * 23 22 20 25 25 C 1.38813 * 120.00164 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99959 * 179.97438 * 25 23 22 27 27 Si 1.86795 * 119.99879 * 0.02562 * 25 23 22 28 28 H 1.48507 * 109.47188 * 90.00029 * 27 25 23 29 29 H 1.48501 * 109.47427 * 329.99902 * 27 25 23 30 30 H 1.48503 * 109.47327 * 209.99809 * 27 25 23 31 31 H 1.09001 * 109.46800 * 299.99898 * 1 2 3 32 32 H 1.09002 * 109.47078 * 59.99675 * 1 2 3 33 33 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47075 * 239.99760 * 2 1 3 35 35 H 1.09002 * 109.47078 * 120.00325 * 2 1 3 36 36 H 1.09006 * 109.58395 * 54.80010 * 5 3 2 37 37 H 1.09002 * 109.70363 * 294.44917 * 5 3 2 38 38 H 1.08001 * 126.28805 * 359.97438 * 10 9 7 39 39 H 1.08999 * 109.46966 * 90.00185 * 12 11 10 40 40 H 1.08996 * 109.47314 * 210.00098 * 12 11 10 41 41 H 1.08997 * 109.47263 * 330.00787 * 12 11 10 42 42 H 1.08999 * 115.55085 * 154.50116 * 15 14 13 43 43 H 1.09000 * 117.50154 * 0.02562 * 16 15 14 44 44 H 1.09004 * 117.49955 * 145.01693 * 16 15 14 45 45 H 1.08999 * 117.49816 * 252.51628 * 17 16 15 46 46 H 1.09000 * 117.49636 * 107.48853 * 17 16 15 47 47 H 1.08998 * 109.58902 * 293.81778 * 18 6 5 48 48 H 1.09005 * 109.58733 * 173.39521 * 18 6 5 49 49 H 1.09000 * 109.49779 * 185.40852 * 19 18 6 50 50 H 1.09000 * 109.52633 * 65.33147 * 19 18 6 51 51 H 0.97004 * 119.99242 * 334.92542 * 22 20 3 52 52 H 0.96999 * 119.99529 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9827 -0.8406 5 6 1.6386 2.1268 1.3105 6 7 2.2452 3.4643 1.3508 7 6 1.4858 4.5565 1.5674 8 8 0.2760 4.4527 1.6323 9 6 2.1218 5.8771 1.7256 10 6 3.2863 6.1484 2.4155 11 7 3.5152 7.4675 2.3144 12 6 4.6484 8.1871 2.9013 13 7 2.4883 8.0393 1.5550 14 6 1.6566 7.1010 1.1949 15 6 0.4153 7.2901 0.3615 16 6 0.1989 8.6610 -0.2826 17 6 -0.6641 8.2288 0.9046 18 6 3.6953 3.5887 1.1499 19 6 4.0737 2.8881 -0.1588 20 6 3.5652 1.4450 -0.1257 21 1 3.8545 0.9369 -1.0457 22 7 4.1508 0.7474 1.0219 23 6 5.3879 0.1705 0.9140 24 1 5.9323 0.2301 -0.0169 25 6 5.9429 -0.4900 2.0015 26 7 7.1319 -1.0450 1.8977 27 14 5.0018 -0.5924 3.6118 28 1 4.1586 -1.8149 3.6155 29 1 4.1367 0.6059 3.7567 30 1 5.9617 -0.6497 4.7434 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 1.9966 1.5376 2.1549 37 1 0.5534 2.2159 1.3612 38 1 3.9003 5.4314 2.9402 39 1 5.4746 8.2053 2.1905 40 1 4.3482 9.2083 3.1357 41 1 4.9656 7.6829 3.8141 42 1 0.0857 6.4138 -0.1966 43 1 0.9545 9.4260 -0.1040 44 1 -0.2730 8.6867 -1.2649 45 1 -1.7036 7.9701 0.7034 46 1 -0.4763 8.7096 1.8647 47 1 4.2210 3.1189 1.9812 48 1 3.9671 4.6427 1.0919 49 1 5.1578 2.8894 -0.2718 50 1 3.6198 3.4146 -0.9983 51 1 3.6620 0.6943 1.8581 52 1 7.5198 -1.5062 2.6577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037852764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:35 Heat of formation + Delta-G solvation = 83.104284 kcal Electronic energy + Delta-G solvation = -32065.818676 eV Core-core repulsion = 28068.294230 eV Total energy + Delta-G solvation = -3997.524446 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.64931 -39.77093 -37.73909 -37.22024 -34.50840 -33.86405 -33.17998 -31.76627 -30.70363 -29.81988 -28.61508 -27.50960 -25.38205 -23.96973 -23.36439 -23.14540 -22.50514 -22.02676 -20.80315 -20.06478 -19.21416 -18.42790 -17.89107 -17.03978 -16.46521 -15.94231 -15.66379 -15.47141 -15.05897 -14.77486 -14.53296 -14.40578 -14.08649 -13.71061 -13.47730 -13.31418 -13.26719 -13.13417 -12.99457 -12.83988 -12.47295 -12.42758 -11.98512 -11.88271 -11.64724 -11.59193 -11.26455 -11.18219 -11.12184 -10.95357 -10.92678 -10.76911 -10.44372 -10.35536 -10.34310 -10.22487 -9.79439 -9.65962 -9.57383 -9.28709 -8.97302 -8.66579 -8.25532 -7.30210 -5.81868 -3.16745 1.47080 2.07235 2.16827 3.12781 3.30100 3.34132 3.39450 3.40820 3.88181 4.14419 4.38306 4.53225 4.63310 4.79612 4.83937 4.84533 4.92312 5.02603 5.08568 5.10378 5.16080 5.27812 5.34932 5.39130 5.46260 5.51791 5.53215 5.55734 5.59635 5.68997 5.70590 5.72371 5.80191 5.91635 6.01918 6.04675 6.05573 6.09619 6.22466 6.29683 6.31219 6.34515 6.46786 6.55182 6.59246 6.65446 6.70338 6.77894 6.94000 7.45634 7.70402 7.95245 8.37437 8.43919 9.16008 9.88620 10.09015 11.36647 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011729 B = 0.003648 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.682297 B = 7672.978804 C = 9128.399674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.119 3.881 6 N -0.601 5.601 7 C 0.593 3.407 8 O -0.547 6.547 9 C -0.273 4.273 10 C 0.098 3.902 11 N -0.363 5.363 12 C 0.098 3.902 13 N -0.300 5.300 14 C 0.157 3.843 15 C -0.077 4.077 16 C -0.168 4.168 17 C -0.156 4.156 18 C 0.109 3.891 19 C -0.148 4.148 20 C 0.185 3.815 21 H 0.060 0.940 22 N -0.743 5.743 23 C -0.239 4.239 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.934 5.934 27 Si 0.878 3.122 28 H -0.284 1.284 29 H -0.279 1.279 30 H -0.292 1.292 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.186 0.814 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.126 0.874 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.077 0.923 50 H 0.052 0.948 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.074 17.462 -1.268 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.091 0.909 5 C -0.003 4.003 6 N -0.333 5.333 7 C 0.381 3.619 8 O -0.425 6.425 9 C -0.287 4.287 10 C -0.052 4.052 11 N -0.141 5.141 12 C -0.043 4.043 13 N -0.122 5.122 14 C -0.010 4.010 15 C -0.097 4.097 16 C -0.206 4.206 17 C -0.194 4.194 18 C -0.014 4.014 19 C -0.189 4.189 20 C 0.075 3.925 21 H 0.078 0.922 22 N -0.387 5.387 23 C -0.369 4.369 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.582 5.582 27 Si 0.708 3.292 28 H -0.210 1.210 29 H -0.205 1.205 30 H -0.218 1.218 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.203 0.797 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.144 0.856 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.112 0.888 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.096 0.904 50 H 0.071 0.929 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.042 18.633 -1.278 21.206 hybrid contribution -0.261 -1.119 1.458 1.857 sum -10.303 17.514 0.180 20.321 Atomic orbital electron populations 1.21858 0.96591 1.01124 1.01551 1.21427 0.94519 0.95719 1.03225 1.21796 0.97329 0.96154 0.97351 0.90922 1.21664 0.99175 0.81604 0.97837 1.47992 1.08688 1.06280 1.70357 1.17281 0.85988 0.82531 0.76061 1.90729 1.13687 1.85898 1.52196 1.20104 1.00222 0.95056 1.13357 1.23183 0.96381 0.86490 0.99185 1.48227 1.20159 1.05604 1.40117 1.21985 0.85313 0.98365 0.98644 1.77054 0.99399 1.21366 1.14343 1.21302 0.94559 0.89300 0.95830 1.20280 0.92298 0.95685 1.01438 1.23012 1.03136 0.96938 0.97473 1.22934 0.96012 1.01963 0.98489 1.21890 0.79311 1.00510 0.99671 1.22476 1.02077 0.98729 0.95645 1.20190 0.89498 0.90652 0.92150 0.92238 1.42842 1.19786 1.65758 1.10337 1.19063 0.92168 1.26485 0.99144 0.89191 1.24630 0.96470 1.00360 0.97498 1.69693 1.16349 1.41285 1.30851 0.86675 0.79382 0.77901 0.85224 1.21018 1.20501 1.21847 0.92815 0.93082 0.93096 0.91546 0.91228 0.91759 0.89153 0.79748 0.90082 0.89029 0.89021 0.85626 0.88119 0.88329 0.88087 0.88802 0.90516 0.90680 0.90412 0.92930 0.80605 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.68 37.16 0.36 -1.59 16 2 C -0.11 -1.65 5.19 -26.73 -0.14 -1.79 16 3 C -0.11 -1.63 2.14 -90.50 -0.19 -1.82 16 4 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 5 C 0.12 1.90 5.04 -3.71 -0.02 1.88 16 6 N -0.60 -9.39 2.97 -174.03 -0.52 -9.91 16 7 C 0.59 9.67 7.44 -12.52 -0.09 9.58 16 8 O -0.55 -10.23 16.01 5.27 0.08 -10.14 16 9 C -0.27 -3.94 5.23 -105.07 -0.55 -4.49 16 10 C 0.10 1.16 9.10 -16.56 -0.15 1.01 16 11 N -0.36 -4.02 3.98 -67.60 -0.27 -4.29 16 12 C 0.10 0.62 11.44 59.85 0.68 1.31 16 13 N -0.30 -3.99 12.08 33.90 0.41 -3.58 16 14 C 0.16 2.20 6.79 -82.02 -0.56 1.64 16 15 C -0.08 -0.96 5.74 -91.77 -0.53 -1.49 16 16 C -0.17 -1.68 10.14 -26.73 -0.27 -1.95 16 17 C -0.16 -1.65 10.23 -26.73 -0.27 -1.92 16 18 C 0.11 1.63 5.21 -3.71 -0.02 1.61 16 19 C -0.15 -2.36 5.78 -26.61 -0.15 -2.51 16 20 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 21 H 0.06 1.10 8.08 -51.93 -0.42 0.69 16 22 N -0.74 -15.80 3.52 -53.38 -0.19 -15.99 16 23 C -0.24 -6.20 10.41 -15.06 -0.16 -6.35 16 24 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 26 N -0.93 -28.13 13.97 55.49 0.78 -27.36 16 27 Si 0.88 21.11 27.74 -169.99 -4.71 16.40 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 30 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 31 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.16 7.70 -51.93 -0.40 0.76 16 36 H 0.06 1.09 6.64 -51.93 -0.34 0.75 16 37 H 0.09 1.44 5.72 -51.93 -0.30 1.15 16 38 H 0.19 1.79 7.31 -52.49 -0.38 1.41 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.13 1.65 8.02 -51.93 -0.42 1.23 16 43 H 0.10 1.04 7.90 -51.93 -0.41 0.63 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.08 1.27 7.74 -51.93 -0.40 0.87 16 48 H 0.08 0.99 4.78 -51.93 -0.25 0.74 16 49 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 50 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.36 7.70 3.81 -40.82 -0.16 7.55 16 52 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 407.07 15.07 6.13 6.13 Total: -1.00 -32.79 407.07 -9.10 -41.89 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -8.49 Total: 10.56 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -2.33 Total: -3.73 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.21 Total: -61.12 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.40 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.79 -9.10 -41.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037852764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.997 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds