Wall clock time and date at job start Wed Apr 1 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46800 * 2 1 4 4 H 1.08992 * 109.49697 * 304.93437 * 3 2 1 5 5 C 1.53190 * 109.49387 * 65.00220 * 3 2 1 6 6 N 1.46927 * 108.77278 * 174.58113 * 5 3 2 7 7 C 1.34782 * 120.62826 * 126.40940 * 6 5 3 8 8 O 1.21602 * 120.00151 * 354.33915 * 7 6 5 9 9 C 1.47433 * 119.99561 * 174.33969 * 7 6 5 10 10 C 1.38043 * 126.41410 * 319.45977 * 9 7 6 11 11 N 1.34270 * 107.41277 * 179.87592 * 10 9 7 12 12 C 1.46497 * 125.75055 * 180.14841 * 11 10 9 13 13 N 1.39930 * 108.49047 * 0.39850 * 11 10 9 14 14 C 1.30446 * 108.90138 * 359.74653 * 13 11 10 15 15 C 1.50702 * 125.99042 * 179.97438 * 14 13 11 16 16 C 1.52990 * 117.49707 * 8.79545 * 15 14 13 17 17 C 1.52997 * 117.49976 * 300.13624 * 15 14 13 18 18 C 1.46927 * 118.74250 * 306.39326 * 6 5 3 19 19 C 1.53193 * 108.77223 * 53.60566 * 18 6 5 20 20 C 1.53041 * 109.31570 * 305.36390 * 19 18 6 21 21 H 1.09003 * 109.46141 * 301.35062 * 20 19 18 22 22 N 1.46494 * 109.46200 * 181.38734 * 20 19 18 23 23 C 1.36937 * 120.00093 * 85.00408 * 22 20 19 24 24 H 1.08004 * 119.99610 * 359.97438 * 23 22 20 25 25 C 1.38814 * 120.00312 * 179.97438 * 23 22 20 26 26 N 1.31614 * 119.99978 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 119.99856 * 0.02562 * 25 23 22 28 28 H 1.48499 * 109.46915 * 89.99581 * 27 25 23 29 29 H 1.48499 * 109.46956 * 209.99804 * 27 25 23 30 30 H 1.48497 * 109.47164 * 329.99840 * 27 25 23 31 31 H 1.08999 * 109.47585 * 300.00060 * 1 2 3 32 32 H 1.09004 * 109.47376 * 59.99846 * 1 2 3 33 33 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47082 * 240.00508 * 2 1 3 35 35 H 1.08991 * 109.47060 * 119.99929 * 2 1 3 36 36 H 1.09000 * 109.59160 * 54.80050 * 5 3 2 37 37 H 1.09000 * 109.70426 * 294.43731 * 5 3 2 38 38 H 1.07993 * 126.29621 * 0.03099 * 10 9 7 39 39 H 1.09001 * 109.47003 * 270.31864 * 12 11 10 40 40 H 1.08996 * 109.47293 * 30.31682 * 12 11 10 41 41 H 1.08997 * 109.46846 * 150.31601 * 12 11 10 42 42 H 1.09004 * 115.54625 * 154.46070 * 15 14 13 43 43 H 1.09004 * 117.50336 * 359.97438 * 16 15 14 44 44 H 1.09007 * 117.49900 * 145.02010 * 16 15 14 45 45 H 1.09002 * 117.49635 * 214.98215 * 17 15 14 46 46 H 1.09000 * 117.50219 * 359.96970 * 17 15 14 47 47 H 1.08999 * 109.58469 * 293.81774 * 18 6 5 48 48 H 1.08995 * 109.70520 * 173.45931 * 18 6 5 49 49 H 1.08994 * 109.50129 * 65.32264 * 19 18 6 50 50 H 1.09009 * 109.49650 * 185.41724 * 19 18 6 51 51 H 0.96997 * 120.00273 * 264.99993 * 22 20 19 52 52 H 0.97001 * 120.00052 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2414 3.4656 1.3494 7 6 1.4815 4.5579 1.5638 8 8 0.2713 4.4545 1.6232 9 6 2.1175 5.8780 1.7263 10 6 3.2752 6.1491 2.4277 11 7 3.5079 7.4675 2.3249 12 6 4.6382 8.1859 2.9185 13 7 2.4857 8.0402 1.5600 14 6 1.6528 7.1035 1.1986 15 6 0.4122 7.2950 0.3648 16 6 0.1979 8.6667 -0.2780 17 6 -0.6666 8.2338 0.9087 18 6 3.6921 3.5899 1.1523 19 6 4.0740 2.8881 -0.1547 20 6 3.5655 1.4450 -0.1217 21 1 3.9989 0.9267 0.7338 22 7 3.9577 0.7609 -1.3563 23 6 5.1956 0.1838 -1.4558 24 1 5.8829 0.2334 -0.6241 25 6 5.5671 -0.4649 -2.6254 26 7 6.7570 -1.0190 -2.7211 27 14 4.3786 -0.5500 -4.0641 28 1 4.5834 0.6274 -4.9456 29 1 4.6239 -1.7948 -4.8357 30 1 2.9838 -0.5502 -3.5545 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.9907 1.5397 2.1547 37 1 0.5497 2.2172 1.3564 38 1 3.8833 5.4322 2.9592 39 1 4.3691 8.5230 3.9195 40 1 5.5001 7.5215 2.9783 41 1 4.8863 9.0479 2.2992 42 1 0.0822 6.4198 -0.1949 43 1 0.9540 9.4308 -0.0976 44 1 -0.2735 8.6940 -1.2605 45 1 -1.7063 7.9764 0.7066 46 1 -0.4792 8.7126 1.8698 47 1 4.2156 3.1209 1.9854 48 1 3.9663 4.6433 1.0950 49 1 3.6219 3.4139 -0.9956 50 1 5.1585 2.8892 -0.2650 51 1 3.3406 0.7166 -2.1033 52 1 7.0168 -1.4720 -3.5386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037852767.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:40 Heat of formation + Delta-G solvation = 81.060557 kcal Electronic energy + Delta-G solvation = -31571.623653 eV Core-core repulsion = 27574.010585 eV Total energy + Delta-G solvation = -3997.613068 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.71753 -39.76002 -37.71827 -37.23846 -34.78893 -33.90618 -33.24384 -31.77469 -30.80421 -29.87570 -28.70362 -27.55335 -25.35686 -24.00793 -23.43432 -22.82820 -22.48021 -21.71391 -20.80113 -20.19345 -19.67271 -18.97938 -17.62907 -17.15130 -16.54654 -16.02228 -15.74803 -15.51850 -15.05671 -14.88339 -14.61192 -14.30787 -14.00483 -13.72820 -13.48145 -13.35470 -13.33479 -13.14437 -13.06949 -12.74924 -12.63892 -12.34525 -12.00938 -11.93366 -11.78172 -11.66300 -11.39318 -11.21641 -11.05281 -11.02584 -10.91926 -10.76147 -10.46951 -10.38306 -10.29964 -10.19882 -9.75784 -9.73020 -9.58563 -9.35148 -8.93814 -8.74381 -8.41802 -7.27958 -5.79608 -3.14587 1.38936 2.01287 2.10045 3.00996 3.30430 3.36224 3.39909 3.44703 3.85699 4.08164 4.31162 4.54308 4.57340 4.74214 4.76635 4.77423 4.89423 4.98079 5.01623 5.04278 5.09070 5.23325 5.26726 5.31714 5.40423 5.49067 5.50657 5.52086 5.52740 5.62462 5.64486 5.70360 5.82718 5.94773 5.99967 6.03031 6.04568 6.06595 6.13481 6.24068 6.28629 6.32086 6.36671 6.49977 6.56925 6.62536 6.72867 6.84003 6.96951 7.38933 7.57511 7.96287 8.33994 8.39748 9.18337 9.91355 10.11537 11.38763 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011832 B = 0.003056 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.841360 B = 9160.509486 C = 9887.070289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.122 3.878 6 N -0.604 5.604 7 C 0.594 3.406 8 O -0.543 6.543 9 C -0.272 4.272 10 C 0.096 3.904 11 N -0.363 5.363 12 C 0.098 3.902 13 N -0.299 5.299 14 C 0.158 3.842 15 C -0.078 4.078 16 C -0.168 4.168 17 C -0.155 4.155 18 C 0.103 3.897 19 C -0.151 4.151 20 C 0.189 3.811 21 H 0.056 0.944 22 N -0.745 5.745 23 C -0.241 4.241 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.934 5.934 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.292 1.292 30 H -0.276 1.276 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.185 0.815 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.126 0.874 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.079 0.921 51 H 0.361 0.639 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.049 17.441 12.494 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.088 0.912 5 C 0.000 4.000 6 N -0.336 5.336 7 C 0.383 3.617 8 O -0.421 6.421 9 C -0.287 4.287 10 C -0.054 4.054 11 N -0.141 5.141 12 C -0.043 4.043 13 N -0.120 5.120 14 C -0.009 4.009 15 C -0.099 4.099 16 C -0.205 4.205 17 C -0.194 4.194 18 C -0.020 4.020 19 C -0.192 4.192 20 C 0.079 3.921 21 H 0.074 0.926 22 N -0.387 5.387 23 C -0.371 4.371 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.582 5.582 27 Si 0.712 3.288 28 H -0.212 1.212 29 H -0.218 1.218 30 H -0.202 1.202 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.202 0.798 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.144 0.856 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.112 0.888 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.077 0.923 50 H 0.097 0.903 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.004 18.601 12.588 24.197 hybrid contribution -0.485 -1.049 -1.052 1.563 sum -9.489 17.552 11.536 23.047 Atomic orbital electron populations 1.21851 0.96628 1.01106 1.01492 1.21463 0.94559 0.95741 1.03357 1.21825 0.97510 0.96225 0.97257 0.91247 1.21704 0.99570 0.81309 0.97453 1.48011 1.08423 1.06482 1.70717 1.17289 0.86001 0.82508 0.75943 1.90742 1.13657 1.85808 1.51882 1.20106 1.00498 0.95014 1.13110 1.23113 0.96518 0.86571 0.99234 1.48238 1.20493 1.05673 1.39716 1.21984 0.85139 0.98391 0.98791 1.77077 0.99503 1.21344 1.14082 1.21322 0.94548 0.89271 0.95733 1.20296 0.92297 0.95796 1.01467 1.23027 1.03105 0.96863 0.97529 1.22946 0.96017 1.01927 0.98483 1.22002 0.79644 1.01414 0.98976 1.22625 1.02391 0.98713 0.95422 1.20156 0.90737 0.90599 0.90570 0.92591 1.42778 1.16546 1.66224 1.13144 1.19044 0.90464 1.27166 1.00409 0.89243 1.24646 0.96413 1.00272 0.97683 1.69692 1.19288 1.41624 1.27610 0.86600 0.81192 0.77302 0.83736 1.21197 1.21812 1.20216 0.92885 0.93087 0.93117 0.90503 0.91985 0.91567 0.88968 0.79804 0.90387 0.88894 0.88859 0.85592 0.88096 0.88273 0.88065 0.88798 0.91552 0.90191 0.92293 0.90260 0.80612 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 37.16 0.36 -1.63 16 2 C -0.11 -1.71 5.31 -26.73 -0.14 -1.85 16 3 C -0.11 -1.67 1.93 -90.50 -0.17 -1.84 16 4 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 5 C 0.12 1.69 5.33 -3.71 -0.02 1.67 16 6 N -0.60 -8.27 2.97 -174.03 -0.52 -8.78 16 7 C 0.59 8.88 7.45 -12.51 -0.09 8.79 16 8 O -0.54 -9.58 15.99 5.28 0.08 -9.49 16 9 C -0.27 -3.60 5.21 -105.06 -0.55 -4.15 16 10 C 0.10 0.97 9.11 -16.56 -0.15 0.82 16 11 N -0.36 -3.59 3.98 -67.60 -0.27 -3.86 16 12 C 0.10 0.50 11.44 59.85 0.68 1.19 16 13 N -0.30 -3.77 12.08 33.90 0.41 -3.36 16 14 C 0.16 2.12 6.79 -82.02 -0.56 1.57 16 15 C -0.08 -0.97 5.73 -91.78 -0.53 -1.49 16 16 C -0.17 -1.68 10.14 -26.70 -0.27 -1.95 16 17 C -0.16 -1.61 10.24 -26.70 -0.27 -1.88 16 18 C 0.10 1.28 5.47 -3.71 -0.02 1.26 16 19 C -0.15 -2.40 5.66 -26.61 -0.15 -2.55 16 20 C 0.19 3.36 2.19 -67.89 -0.15 3.21 16 21 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 22 N -0.75 -16.62 4.14 -53.38 -0.22 -16.84 16 23 C -0.24 -6.46 10.41 -15.06 -0.16 -6.61 16 24 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 25 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 26 N -0.93 -28.69 13.97 55.49 0.78 -27.92 16 27 Si 0.88 21.79 27.74 -169.99 -4.71 17.08 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 31 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.36 7.22 -51.93 -0.38 0.99 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.33 5.72 -51.93 -0.30 1.04 16 38 H 0.19 1.26 7.34 -52.49 -0.39 0.87 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.13 1.67 8.01 -51.93 -0.42 1.25 16 43 H 0.10 1.04 7.90 -51.93 -0.41 0.63 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.08 0.90 4.82 -51.93 -0.25 0.65 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 50 H 0.08 1.36 8.14 -51.92 -0.42 0.94 16 51 H 0.36 8.14 5.38 -40.82 -0.22 7.93 16 52 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 410.71 15.07 6.19 6.19 Total: -1.00 -34.15 410.71 -9.18 -43.33 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.63 Total: 9.08 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.28 Total: -5.42 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.18 Total: -60.76 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.08 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.15 -9.18 -43.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037852767.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.388 kcal (2) G-P(sol) polarization free energy of solvation -34.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds