Wall clock time and date at job start Wed Apr 1 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47255 * 2 1 4 4 H 1.09006 * 109.52357 * 305.07297 * 3 2 1 5 5 C 1.53190 * 109.50258 * 65.15881 * 3 2 1 6 6 N 1.46924 * 108.77706 * 174.58957 * 5 3 2 7 7 C 1.34776 * 120.63256 * 126.41689 * 6 5 3 8 8 O 1.21627 * 119.99855 * 351.35773 * 7 6 5 9 9 C 1.47167 * 119.99859 * 171.36229 * 7 6 5 10 10 C 1.38402 * 126.88523 * 332.71031 * 9 7 6 11 11 C 1.39668 * 105.35994 * 179.97438 * 10 9 7 12 12 C 1.50696 * 126.07298 * 180.15110 * 11 10 9 13 13 C 1.53005 * 117.49608 * 344.01187 * 12 11 10 14 14 C 1.53007 * 117.49713 * 275.35475 * 12 11 10 15 15 N 1.30871 * 107.86256 * 0.35427 * 11 10 9 16 16 N 1.28445 * 110.92305 * 359.77132 * 15 11 10 17 17 C 1.46504 * 125.18570 * 179.97438 * 16 15 11 18 18 C 1.46927 * 118.73586 * 306.38991 * 6 5 3 19 19 C 1.53184 * 108.77744 * 53.60962 * 18 6 5 20 20 C 1.53043 * 109.31446 * 305.36423 * 19 18 6 21 21 H 1.09002 * 109.46207 * 181.36830 * 20 19 18 22 22 N 1.46500 * 109.45956 * 301.34350 * 20 19 18 23 23 C 1.36935 * 119.99710 * 274.99984 * 22 20 19 24 24 H 1.07994 * 120.00295 * 359.97438 * 23 22 20 25 25 C 1.38815 * 119.99600 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99879 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00065 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46749 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.47133 * 240.00203 * 27 25 23 30 30 H 1.48493 * 109.47248 * 120.00042 * 27 25 23 31 31 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47103 * 300.00908 * 1 2 3 33 33 H 1.09005 * 109.46944 * 60.00198 * 1 2 3 34 34 H 1.08998 * 109.47103 * 239.99092 * 2 1 3 35 35 H 1.09007 * 109.46446 * 119.99691 * 2 1 3 36 36 H 1.09003 * 109.58626 * 54.79902 * 5 3 2 37 37 H 1.09003 * 109.69961 * 294.44606 * 5 3 2 38 38 H 1.08002 * 127.32030 * 0.02562 * 10 9 7 39 39 H 1.08997 * 115.55663 * 129.67855 * 12 11 10 40 40 H 1.08999 * 117.49790 * 0.02562 * 13 12 11 41 41 H 1.09004 * 117.50137 * 145.01820 * 13 12 11 42 42 H 1.09004 * 117.49728 * 214.97475 * 14 12 11 43 43 H 1.09000 * 117.49707 * 359.97438 * 14 12 11 44 44 H 1.08997 * 109.47190 * 264.50389 * 17 16 15 45 45 H 1.08994 * 109.47298 * 24.50694 * 17 16 15 46 46 H 1.09002 * 109.46550 * 144.50687 * 17 16 15 47 47 H 1.09002 * 109.58803 * 293.82086 * 18 6 5 48 48 H 1.09002 * 109.70043 * 173.46972 * 18 6 5 49 49 H 1.08998 * 109.50124 * 185.41156 * 19 18 6 50 50 H 1.09007 * 109.52464 * 65.33223 * 19 18 6 51 51 H 0.96993 * 119.99585 * 94.99835 * 22 20 19 52 52 H 0.96998 * 120.00497 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6049 1.9827 -0.8408 5 6 1.6386 2.1268 1.3104 6 7 2.2452 3.4644 1.3505 7 6 1.4859 4.5565 1.5679 8 8 0.2733 4.4622 1.5766 9 6 2.1241 5.8631 1.7947 10 6 3.3813 6.0925 2.3261 11 6 3.5297 7.4812 2.3390 12 6 4.7370 8.2400 2.8262 13 6 5.7466 7.4818 3.6905 14 6 4.8308 8.5314 4.3253 15 7 2.4322 8.0067 1.8571 16 7 1.5913 7.0927 1.5297 17 6 0.2632 7.3324 0.9596 18 6 3.6953 3.5887 1.1497 19 6 4.0738 2.8880 -0.1589 20 6 3.5653 1.4449 -0.1257 21 1 3.8545 0.9367 -1.0457 22 7 4.1507 0.7474 1.0219 23 6 5.3880 0.1705 0.9141 24 1 5.9319 0.2293 -0.0170 25 6 5.9429 -0.4899 2.0017 26 7 5.2796 -0.5620 3.1363 27 14 7.6303 -1.2776 1.8546 28 1 8.1616 -1.0574 0.4854 29 1 7.5205 -2.7355 2.1150 30 1 8.5505 -0.6655 2.8464 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5140 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5140 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.9965 1.5378 2.1549 37 1 0.5534 2.2160 1.3609 38 1 4.0960 5.3545 2.6591 39 1 5.1264 8.9936 2.1417 40 1 5.5375 6.4340 3.9063 41 1 6.8000 7.7368 3.5749 42 1 5.2822 9.4766 4.6270 43 1 4.0189 8.1746 4.9591 44 1 -0.4809 7.3245 1.7560 45 1 0.2514 8.3016 0.4610 46 1 0.0311 6.5495 0.2376 47 1 4.2210 3.1190 1.9810 48 1 3.9694 4.6422 1.0926 49 1 5.1579 2.8892 -0.2720 50 1 3.6199 3.4145 -0.9985 51 1 3.6620 0.6943 1.8580 52 1 4.4029 -0.1540 3.2124 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037853592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:27 Heat of formation + Delta-G solvation = 85.399319 kcal Electronic energy + Delta-G solvation = -32060.680991 eV Core-core repulsion = 28063.256065 eV Total energy + Delta-G solvation = -3997.424926 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.69716 -40.01030 -37.94107 -37.28119 -34.81721 -34.02388 -33.04458 -31.87015 -31.17424 -29.34894 -28.30739 -27.38581 -25.50499 -24.04423 -23.53795 -23.28208 -22.67894 -22.10038 -20.90859 -20.64100 -19.18440 -18.55359 -17.39933 -17.20174 -16.61565 -16.26123 -15.97981 -15.37154 -15.16811 -14.89127 -14.49737 -14.40095 -14.00892 -13.82009 -13.71328 -13.40943 -13.33455 -13.08926 -12.98241 -12.78395 -12.73580 -12.25295 -12.07798 -11.83159 -11.63403 -11.61296 -11.25025 -11.16335 -10.93807 -10.76342 -10.72583 -10.58261 -10.39775 -10.32670 -10.24925 -10.07576 -9.94990 -9.91698 -9.19258 -9.08939 -8.96715 -8.82207 -8.39205 -7.06727 -6.12941 -3.13618 1.27023 2.23424 2.39785 3.06581 3.15445 3.49685 3.55178 3.64500 3.71054 4.19662 4.40538 4.63453 4.69649 4.78416 4.84254 4.99206 5.00498 5.10836 5.13820 5.21995 5.24599 5.31823 5.37820 5.41848 5.46820 5.52638 5.55571 5.60470 5.60829 5.69155 5.70151 5.78502 5.79136 5.91619 6.00050 6.02127 6.03217 6.07168 6.19632 6.26251 6.31543 6.36625 6.44163 6.50252 6.57729 6.63034 6.65898 6.79268 6.86815 7.46470 7.79320 7.95859 8.12672 8.71690 9.17841 10.04322 10.19745 11.34737 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009193 B = 0.003883 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.140237 B = 7208.471239 C = 9639.780031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.104 4.104 4 H 0.068 0.932 5 C 0.121 3.879 6 N -0.584 5.584 7 C 0.587 3.413 8 O -0.551 6.551 9 C -0.027 4.027 10 C -0.182 4.182 11 C 0.055 3.945 12 C -0.073 4.073 13 C -0.165 4.165 14 C -0.168 4.168 15 N -0.275 5.275 16 N -0.262 5.262 17 C 0.095 3.905 18 C 0.097 3.903 19 C -0.148 4.148 20 C 0.184 3.816 21 H 0.052 0.948 22 N -0.729 5.729 23 C -0.328 4.328 24 H 0.064 0.936 25 C -0.042 4.042 26 N -0.944 5.944 27 Si 1.082 2.918 28 H -0.295 1.295 29 H -0.294 1.294 30 H -0.294 1.294 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.167 0.833 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.089 0.911 49 H 0.077 0.923 50 H 0.048 0.952 51 H 0.366 0.634 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.048 15.079 -4.027 16.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.124 4.124 4 H 0.087 0.913 5 C 0.000 4.000 6 N -0.315 5.315 7 C 0.374 3.626 8 O -0.430 6.430 9 C -0.156 4.156 10 C -0.211 4.211 11 C -0.102 4.102 12 C -0.093 4.093 13 C -0.203 4.203 14 C -0.206 4.206 15 N -0.108 5.108 16 N -0.049 5.049 17 C -0.045 4.045 18 C -0.024 4.024 19 C -0.190 4.190 20 C 0.074 3.926 21 H 0.070 0.930 22 N -0.373 5.373 23 C -0.459 4.459 24 H 0.082 0.918 25 C -0.240 4.240 26 N -0.589 5.589 27 Si 0.913 3.087 28 H -0.222 1.222 29 H -0.221 1.221 30 H -0.221 1.221 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.184 0.816 39 H 0.135 0.865 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.102 0.898 48 H 0.107 0.893 49 H 0.095 0.905 50 H 0.067 0.933 51 H 0.201 0.799 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.070 15.165 -3.746 16.759 hybrid contribution -0.877 0.100 -0.479 1.004 sum -6.947 15.266 -4.225 17.296 Atomic orbital electron populations 1.21856 0.96650 1.01162 1.01403 1.21405 0.94397 0.95582 1.03303 1.21774 0.97555 0.96172 0.96895 0.91350 1.21745 0.98955 0.80887 0.98452 1.47827 1.09130 1.05977 1.68520 1.16932 0.85971 0.82432 0.77283 1.90769 1.13264 1.85867 1.53078 1.21410 0.95918 0.87990 1.10232 1.22288 0.95910 0.96390 1.06504 1.20997 0.93950 0.91550 1.03668 1.20009 0.93710 1.01752 0.93817 1.23049 0.96287 0.98342 1.02594 1.22998 1.02660 1.00595 0.94307 1.73055 1.00888 1.18984 1.17849 1.45495 1.13832 1.01911 1.43641 1.22161 0.78190 1.04215 0.99951 1.22261 0.78536 1.01732 0.99910 1.22509 1.02013 0.99013 0.95422 1.20161 0.89414 0.90641 0.92430 0.92988 1.42470 1.19514 1.65129 1.10172 1.20073 0.94671 1.31542 0.99646 0.91755 1.25664 1.05504 1.00129 0.92708 1.70838 1.14488 1.47719 1.25895 0.83191 0.74797 0.76273 0.74410 1.22198 1.22148 1.22110 0.93037 0.92812 0.93260 0.91845 0.90845 0.90878 0.89239 0.81567 0.86456 0.88092 0.87946 0.88350 0.88765 0.89500 0.88759 0.88583 0.89830 0.89256 0.90490 0.93331 0.79928 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.68 37.16 0.36 -1.64 16 2 C -0.11 -1.68 5.19 -26.73 -0.14 -1.82 16 3 C -0.10 -1.64 2.14 -90.50 -0.19 -1.83 16 4 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 5 C 0.12 1.96 5.04 -3.71 -0.02 1.94 16 6 N -0.58 -9.28 2.97 -174.14 -0.52 -9.79 16 7 C 0.59 9.54 7.45 -12.64 -0.09 9.45 16 8 O -0.55 -9.80 15.12 5.25 0.08 -9.72 16 9 C -0.03 -0.41 6.40 -82.06 -0.53 -0.93 16 10 C -0.18 -2.54 7.88 -38.99 -0.31 -2.85 16 11 C 0.05 0.73 6.85 -82.47 -0.57 0.17 16 12 C -0.07 -0.78 6.33 -91.77 -0.58 -1.36 16 13 C -0.17 -1.56 10.03 -26.69 -0.27 -1.83 16 14 C -0.17 -1.57 10.24 -26.69 -0.27 -1.84 16 15 N -0.28 -3.90 11.90 33.64 0.40 -3.50 16 16 N -0.26 -3.63 3.75 -63.88 -0.24 -3.87 16 17 C 0.10 0.98 10.53 59.85 0.63 1.61 16 18 C 0.10 1.53 4.91 -3.71 -0.02 1.51 16 19 C -0.15 -2.44 5.78 -26.61 -0.15 -2.59 16 20 C 0.18 3.34 2.53 -67.89 -0.17 3.17 16 21 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 22 N -0.73 -16.18 3.72 -53.38 -0.20 -16.37 16 23 C -0.33 -8.46 9.93 -15.06 -0.15 -8.60 16 24 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 25 C -0.04 -1.15 5.50 -17.43 -0.10 -1.25 16 26 N -0.94 -27.62 13.70 55.49 0.76 -26.86 16 27 Si 1.08 24.97 29.92 -169.99 -5.09 19.88 16 28 H -0.30 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.31 7.70 -51.92 -0.40 0.91 16 36 H 0.07 1.28 6.64 -51.93 -0.34 0.94 16 37 H 0.09 1.43 5.73 -51.93 -0.30 1.13 16 38 H 0.17 2.18 5.90 -52.49 -0.31 1.87 16 39 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.10 1.03 7.21 -51.93 -0.37 0.65 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.10 1.00 7.41 -51.93 -0.39 0.62 16 47 H 0.08 1.50 7.74 -51.93 -0.40 1.10 16 48 H 0.09 1.28 4.32 -51.93 -0.22 1.06 16 49 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 50 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.37 8.50 4.78 -40.82 -0.19 8.31 16 52 H 0.25 7.32 6.77 -40.82 -0.28 7.04 16 LS Contribution 403.29 15.07 6.08 6.08 Total: -1.00 -30.88 403.29 -9.54 -40.43 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -8.26 Total: 12.42 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.56 Total: -8.68 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.20 Total: -60.40 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.09 Total: 19.88 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.88 -9.54 -40.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037853592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.828 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds