Wall clock time and date at job start Wed Apr 1 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47044 * 2 1 4 4 H 1.09006 * 109.50220 * 305.07426 * 3 2 1 5 5 C 1.53632 * 109.43025 * 65.29305 * 3 2 1 6 6 N 1.46925 * 108.54450 * 174.72498 * 5 3 2 7 7 C 1.34769 * 120.63127 * 126.37185 * 6 5 3 8 8 O 1.21631 * 119.99971 * 6.61664 * 7 6 5 9 9 C 1.47162 * 120.00321 * 186.61891 * 7 6 5 10 10 C 1.38405 * 126.87970 * 25.78333 * 9 7 6 11 11 C 1.39674 * 105.36064 * 179.77515 * 10 9 7 12 12 C 1.50697 * 126.07042 * 180.20345 * 11 10 9 13 13 C 1.52992 * 117.50187 * 343.75003 * 12 11 10 14 14 C 1.53008 * 117.49903 * 275.08778 * 12 11 10 15 15 N 1.30868 * 107.86077 * 0.22845 * 11 10 9 16 16 N 1.28444 * 110.92590 * 359.97438 * 15 11 10 17 17 C 1.46498 * 125.19155 * 179.97438 * 16 15 11 18 18 C 1.46930 * 118.73497 * 306.09337 * 6 5 3 19 19 C 1.53184 * 108.77637 * 53.86258 * 18 6 5 20 20 C 1.53040 * 109.49875 * 185.00366 * 3 2 1 21 21 H 1.08996 * 109.44996 * 298.69647 * 20 3 2 22 22 N 1.46498 * 109.46182 * 58.66872 * 20 3 2 23 23 C 1.36938 * 119.99808 * 205.07225 * 22 20 3 24 24 H 1.07994 * 120.00136 * 359.97438 * 23 22 20 25 25 C 1.38809 * 119.99617 * 179.97438 * 23 22 20 26 26 N 1.31626 * 120.00451 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00004 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47176 * 90.00312 * 27 25 23 29 29 H 1.48501 * 109.47365 * 210.00356 * 27 25 23 30 30 H 1.48502 * 109.47084 * 330.00080 * 27 25 23 31 31 H 1.08998 * 109.47017 * 299.98985 * 1 2 3 32 32 H 1.08995 * 109.47895 * 59.99842 * 1 2 3 33 33 H 1.09007 * 109.47060 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46931 * 240.00505 * 2 1 3 35 35 H 1.09001 * 109.47776 * 120.00608 * 2 1 3 36 36 H 1.09001 * 109.73332 * 54.98435 * 5 3 2 37 37 H 1.08997 * 109.66521 * 294.41904 * 5 3 2 38 38 H 1.08003 * 127.32312 * 0.03703 * 10 9 7 39 39 H 1.09004 * 115.55159 * 129.42640 * 12 11 10 40 40 H 1.09007 * 117.49945 * 359.97438 * 13 12 11 41 41 H 1.08999 * 117.50089 * 145.02295 * 13 12 11 42 42 H 1.08996 * 117.49635 * 214.98225 * 14 12 11 43 43 H 1.08998 * 117.49711 * 0.02562 * 14 12 11 44 44 H 1.09007 * 109.47068 * 95.42035 * 17 16 15 45 45 H 1.08993 * 109.47151 * 215.41981 * 17 16 15 46 46 H 1.08994 * 109.47215 * 335.42536 * 17 16 15 47 47 H 1.09002 * 109.58099 * 173.65251 * 18 6 5 48 48 H 1.09000 * 109.58852 * 294.07003 * 18 6 5 49 49 H 1.09007 * 109.49965 * 65.31347 * 19 18 6 50 50 H 1.09003 * 109.49666 * 185.37773 * 19 18 6 51 51 H 0.96997 * 119.99589 * 25.06177 * 22 20 3 52 52 H 0.96999 * 120.00096 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9824 -0.8409 5 6 1.6394 2.1262 1.3162 6 7 2.2450 3.4643 1.3509 7 6 1.4858 4.5563 1.5685 8 8 0.3108 4.4323 1.8575 9 6 2.0781 5.8987 1.4564 10 6 3.1765 6.2611 0.6962 11 6 3.3428 7.6305 0.9156 12 6 4.4085 8.5039 0.3053 13 6 5.6165 7.8083 -0.3251 14 6 5.7687 8.5517 1.0044 15 7 2.4092 8.0202 1.7458 16 7 1.6557 7.0364 2.0835 17 6 0.5149 7.1220 2.9987 18 6 3.6952 3.5887 1.1499 19 6 4.0735 2.8882 -0.1588 20 6 3.5652 1.4451 -0.1258 21 1 4.0007 0.9262 0.7281 22 7 3.9541 0.7622 -1.3622 23 6 5.1917 0.1853 -1.4655 24 1 5.8811 0.2340 -0.6357 25 6 5.5600 -0.4621 -2.6369 26 7 4.7195 -0.5220 -3.6481 27 14 7.2484 -1.2486 -2.7781 28 1 7.1786 -2.6577 -2.3147 29 1 7.6933 -1.2149 -4.1946 30 1 8.2158 -0.4983 -1.9376 31 1 -0.3633 0.5137 0.8901 32 1 -0.3635 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.0009 1.5393 2.1606 37 1 0.5542 2.2148 1.3680 38 1 3.7750 5.6219 0.0640 39 1 4.0525 9.4199 -0.1662 40 1 5.6408 6.7189 -0.2980 41 1 6.0556 8.2669 -1.2111 42 1 6.3076 9.4991 0.9924 43 1 5.8928 7.9511 1.9055 44 1 -0.4026 7.2506 2.4244 45 1 0.4507 6.2060 3.5859 46 1 0.6479 7.9731 3.6664 47 1 3.9669 4.6427 1.0921 48 1 4.2209 3.1189 1.9812 49 1 3.6191 3.4149 -0.9980 50 1 5.1577 2.8901 -0.2722 51 1 3.3349 0.7187 -2.1075 52 1 4.9770 -0.9741 -4.4667 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037853593.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:31 Heat of formation + Delta-G solvation = 90.470693 kcal Electronic energy + Delta-G solvation = -31680.463351 eV Core-core repulsion = 27683.258337 eV Total energy + Delta-G solvation = -3997.205014 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.77878 -39.99168 -37.87214 -37.30511 -34.99863 -33.85882 -33.09137 -31.77352 -31.30730 -29.56303 -28.52519 -27.43021 -25.50196 -24.02187 -23.66478 -23.05453 -22.58392 -21.83539 -20.96220 -20.69216 -19.50807 -18.85269 -17.34305 -17.11233 -16.75316 -16.45268 -15.86208 -15.46675 -15.04467 -14.74911 -14.69057 -14.53988 -13.95199 -13.82782 -13.64303 -13.37096 -13.15745 -13.14057 -12.90048 -12.70237 -12.67917 -12.21111 -12.09587 -11.79259 -11.67925 -11.56102 -11.34620 -11.13523 -10.94531 -10.86639 -10.79858 -10.70528 -10.40952 -10.37205 -10.23741 -10.18334 -10.04423 -9.74518 -9.63997 -9.19328 -8.96038 -8.83902 -8.54232 -6.99064 -5.80004 -3.08889 1.18685 2.18273 2.32595 3.03051 3.03883 3.40633 3.46167 3.47810 3.66980 4.13229 4.32894 4.55127 4.64915 4.74704 4.80317 4.95260 4.98841 5.06196 5.16013 5.17257 5.22452 5.26956 5.32155 5.34742 5.43937 5.49543 5.54427 5.58269 5.59773 5.63993 5.69017 5.74576 5.82662 5.95742 5.97869 6.00047 6.07795 6.12573 6.28113 6.29242 6.31957 6.36179 6.41916 6.50673 6.57064 6.63115 6.79178 6.91742 7.01816 7.34490 7.66404 7.89492 8.04533 8.38027 9.49733 10.06671 10.41587 11.42310 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009939 B = 0.003432 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.614705 B = 8156.323597 C =10546.273767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.105 4.105 4 H 0.071 0.929 5 C 0.122 3.878 6 N -0.586 5.586 7 C 0.589 3.411 8 O -0.548 6.548 9 C -0.027 4.027 10 C -0.189 4.189 11 C 0.056 3.944 12 C -0.074 4.074 13 C -0.165 4.165 14 C -0.167 4.167 15 N -0.275 5.275 16 N -0.261 5.261 17 C 0.094 3.906 18 C 0.072 3.928 19 C -0.152 4.152 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.239 4.239 24 H 0.070 0.930 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.175 0.825 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.106 0.894 48 H 0.068 0.932 49 H 0.061 0.939 50 H 0.078 0.922 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.543 15.140 12.330 20.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.001 4.001 6 N -0.318 5.318 7 C 0.375 3.625 8 O -0.426 6.426 9 C -0.156 4.156 10 C -0.217 4.217 11 C -0.100 4.100 12 C -0.094 4.094 13 C -0.203 4.203 14 C -0.205 4.205 15 N -0.107 5.107 16 N -0.048 5.048 17 C -0.046 4.046 18 C -0.050 4.050 19 C -0.193 4.193 20 C 0.073 3.927 21 H 0.066 0.934 22 N -0.360 5.360 23 C -0.370 4.370 24 H 0.088 0.912 25 C -0.207 4.207 26 N -0.579 5.579 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.192 0.808 39 H 0.135 0.865 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.123 0.877 48 H 0.086 0.914 49 H 0.080 0.920 50 H 0.097 0.903 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.555 15.901 13.175 21.384 hybrid contribution 1.036 -1.166 -0.886 1.794 sum -4.519 14.735 12.288 19.712 Atomic orbital electron populations 1.21848 0.96811 1.01092 1.01282 1.21451 0.94365 0.95597 1.03561 1.21880 0.97819 0.96311 0.96449 0.91066 1.21924 0.99367 0.80652 0.98114 1.47838 1.08737 1.06048 1.69135 1.16925 0.85433 0.82598 0.77499 1.90782 1.15900 1.86689 1.49258 1.21415 1.00182 0.89977 1.04023 1.22378 0.98717 0.95740 1.04854 1.21028 0.97091 0.92703 0.99178 1.20019 0.86218 0.99543 1.03637 1.23054 0.99829 1.00497 0.96890 1.23000 0.98100 1.02613 0.96773 1.73069 1.05293 1.15549 1.16812 1.45518 1.22816 1.03602 1.32848 1.22177 0.85133 1.05007 0.92269 1.22702 0.78906 1.03926 0.99457 1.22691 1.02352 0.99305 0.94940 1.20177 0.90668 0.90556 0.91269 0.93398 1.42401 1.16524 1.64423 1.12637 1.19202 0.91815 1.27388 0.98594 0.91239 1.24716 0.98086 1.01486 0.96426 1.69658 1.35235 1.48297 1.04744 0.86244 0.84081 0.79343 0.76820 1.21795 1.21847 1.20786 0.93250 0.92976 0.93128 0.89682 0.92413 0.91268 0.89021 0.80796 0.86467 0.88037 0.87953 0.88356 0.88690 0.89424 0.88534 0.88730 0.87671 0.91407 0.92038 0.90345 0.78185 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.68 37.16 0.36 -1.69 16 2 C -0.11 -1.74 5.31 -26.73 -0.14 -1.88 16 3 C -0.10 -1.64 1.94 -90.27 -0.17 -1.82 16 4 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 5 C 0.12 1.70 5.33 -3.48 -0.02 1.68 16 6 N -0.59 -8.18 2.97 -173.87 -0.52 -8.69 16 7 C 0.59 8.73 7.48 -12.64 -0.09 8.63 16 8 O -0.55 -9.08 15.08 5.25 0.08 -9.01 16 9 C -0.03 -0.38 6.56 -82.06 -0.54 -0.91 16 10 C -0.19 -2.39 8.04 -38.98 -0.31 -2.70 16 11 C 0.06 0.70 6.85 -82.47 -0.57 0.13 16 12 C -0.07 -0.74 6.33 -91.77 -0.58 -1.32 16 13 C -0.17 -1.42 10.03 -26.70 -0.27 -1.69 16 14 C -0.17 -1.40 10.24 -26.69 -0.27 -1.68 16 15 N -0.27 -3.65 11.90 33.64 0.40 -3.25 16 16 N -0.26 -3.36 3.75 -63.88 -0.24 -3.60 16 17 C 0.09 0.89 10.52 59.85 0.63 1.52 16 18 C 0.07 0.93 5.85 -3.71 -0.02 0.91 16 19 C -0.15 -2.39 5.51 -26.61 -0.15 -2.53 16 20 C 0.18 3.30 2.19 -67.89 -0.15 3.15 16 21 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 22 N -0.72 -16.58 4.33 -53.39 -0.23 -16.81 16 23 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 24 H 0.07 1.76 7.83 -52.49 -0.41 1.34 16 25 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 26 N -0.93 -27.07 13.06 55.49 0.72 -26.35 16 27 Si 0.90 21.60 29.55 -169.99 -5.02 16.58 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 31 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.08 1.60 7.22 -51.93 -0.37 1.22 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.32 5.78 -51.93 -0.30 1.02 16 38 H 0.18 2.04 5.40 -52.48 -0.28 1.76 16 39 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.10 0.91 7.22 -51.93 -0.37 0.54 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 45 H 0.10 0.90 7.39 -51.93 -0.38 0.52 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.11 1.24 3.11 -51.93 -0.16 1.08 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 50 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 51 H 0.38 9.63 7.51 -40.82 -0.31 9.33 16 52 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 407.76 15.07 6.14 6.14 Total: -1.00 -30.95 407.76 -9.62 -40.57 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -8.42 Total: 11.35 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -2.54 Total: -6.94 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.14 Total: -58.70 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.95 -9.62 -40.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037853593.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.039 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds