Wall clock time and date at job start Wed Apr 1 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47465 * 2 1 4 4 H 1.09004 * 109.49851 * 55.06648 * 3 2 1 5 5 C 1.53195 * 109.50087 * 295.00683 * 3 2 1 6 6 N 1.46924 * 108.77783 * 185.37759 * 5 3 2 7 7 C 1.34771 * 120.63245 * 233.58281 * 6 5 3 8 8 O 1.21629 * 120.00010 * 6.31880 * 7 6 5 9 9 C 1.47162 * 120.00246 * 186.31927 * 7 6 5 10 10 C 1.38410 * 126.88273 * 20.28601 * 9 7 6 11 11 C 1.39678 * 105.35581 * 180.10555 * 10 9 7 12 12 C 1.50698 * 126.06392 * 179.85445 * 11 10 9 13 13 C 1.53002 * 117.50163 * 343.33771 * 12 11 10 14 14 C 1.53002 * 117.49943 * 274.71159 * 12 11 10 15 15 N 1.30862 * 107.86363 * 359.58980 * 11 10 9 16 16 N 1.28443 * 110.92646 * 0.26784 * 15 11 10 17 17 C 1.46502 * 125.19004 * 180.02562 * 16 15 11 18 18 C 1.46931 * 118.73586 * 53.85671 * 6 5 3 19 19 C 1.53620 * 108.54599 * 306.09326 * 18 6 5 20 20 C 1.53038 * 109.52924 * 175.14724 * 3 2 1 21 21 H 1.09004 * 109.46054 * 301.35886 * 20 3 2 22 22 N 1.46499 * 109.46016 * 61.32642 * 20 3 2 23 23 C 1.36929 * 120.00347 * 205.00238 * 22 20 3 24 24 H 1.08000 * 120.00002 * 359.97438 * 23 22 20 25 25 C 1.38818 * 120.00105 * 180.02562 * 23 22 20 26 26 N 1.31610 * 120.00017 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99854 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47165 * 59.99812 * 27 25 23 29 29 H 1.48501 * 109.46901 * 180.02562 * 27 25 23 30 30 H 1.48496 * 109.46988 * 299.99866 * 27 25 23 31 31 H 1.09001 * 109.46623 * 299.99376 * 1 2 3 32 32 H 1.09003 * 109.46872 * 59.99445 * 1 2 3 33 33 H 1.08996 * 109.47284 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.47054 * 240.00592 * 2 1 3 35 35 H 1.08996 * 109.47445 * 120.00881 * 2 1 3 36 36 H 1.08998 * 109.58440 * 65.58618 * 5 3 2 37 37 H 1.09006 * 109.58279 * 305.16517 * 5 3 2 38 38 H 1.07993 * 127.32382 * 0.02562 * 10 9 7 39 39 H 1.09009 * 115.56184 * 129.02844 * 12 11 10 40 40 H 1.08997 * 117.49459 * 0.02562 * 13 12 11 41 41 H 1.09004 * 117.49792 * 145.02401 * 13 12 11 42 42 H 1.08999 * 117.50127 * 214.97975 * 14 12 11 43 43 H 1.08996 * 117.49613 * 0.02562 * 14 12 11 44 44 H 1.08994 * 109.47333 * 95.53038 * 17 16 15 45 45 H 1.09005 * 109.46811 * 215.53386 * 17 16 15 46 46 H 1.09002 * 109.46847 * 335.52426 * 17 16 15 47 47 H 1.08998 * 109.59008 * 65.93131 * 18 6 5 48 48 H 1.09000 * 109.58237 * 186.35307 * 18 6 5 49 49 H 1.09001 * 109.63406 * 294.86711 * 19 18 6 50 50 H 1.09002 * 109.43213 * 174.72416 * 19 18 6 51 51 H 0.97008 * 119.99858 * 25.00328 * 22 20 3 52 52 H 0.97002 * 120.00209 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6066 1.9816 0.8424 5 6 1.6350 2.1281 -1.3087 6 7 2.2409 3.4660 -1.3489 7 6 1.4806 4.5579 -1.5632 8 8 0.2695 4.4559 -1.6110 9 6 2.1156 5.8737 -1.7394 10 6 3.4293 6.1207 -2.0985 11 6 3.5484 7.5120 -2.1314 12 6 4.7954 8.2879 -2.4692 13 6 6.1279 7.5372 -2.4262 14 6 5.7886 8.5567 -1.3369 15 7 2.3836 8.0221 -1.8225 16 7 1.5250 7.0961 -1.5878 17 6 0.1255 7.3171 -1.2151 18 6 3.6923 3.5903 -1.1570 19 6 4.0734 2.8889 0.1556 20 6 3.5656 1.4456 0.1220 21 1 3.8575 0.9365 1.0406 22 7 4.1486 0.7499 -1.0279 23 6 5.3869 0.1747 -0.9244 24 1 5.9340 0.2342 0.0049 25 6 5.9396 -0.4840 -2.0142 26 7 5.2731 -0.5561 -3.1468 27 14 7.6286 -1.2694 -1.8726 28 1 7.6074 -2.2998 -0.8036 29 1 7.9892 -1.9043 -3.1658 30 1 8.6321 -0.2278 -1.5363 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8898 36 1 0.5496 2.2169 -1.3539 37 1 1.9912 1.5401 -2.1547 38 1 4.1990 5.3925 -2.3073 39 1 4.6773 9.0605 -3.2291 40 1 6.1026 6.4821 -2.1540 41 1 6.8864 7.8160 -3.1577 42 1 6.3239 9.5061 -1.3518 43 1 5.5403 8.1721 -0.3478 44 1 -0.4999 7.2683 -2.1064 45 1 -0.1881 6.5484 -0.5086 46 1 0.0234 8.2989 -0.7527 47 1 4.2128 3.1192 -1.9907 48 1 3.9646 4.6443 -1.1021 49 1 3.6208 3.4144 0.9965 50 1 5.1579 2.8905 0.2659 51 1 3.6574 0.6968 -1.8627 52 1 5.6591 -1.0167 -3.9082 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037853594.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:36 Heat of formation + Delta-G solvation = 93.297484 kcal Electronic energy + Delta-G solvation = -32083.116320 eV Core-core repulsion = 28086.033885 eV Total energy + Delta-G solvation = -3997.082435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.67008 -39.91482 -37.84685 -37.24778 -34.75788 -33.78390 -32.97598 -31.73643 -31.17457 -29.40266 -28.37375 -27.35663 -25.53399 -24.06337 -23.66868 -23.15874 -22.63043 -22.02174 -20.79138 -20.66315 -19.06063 -18.43196 -17.39532 -16.95132 -16.54542 -16.37403 -15.82357 -15.41531 -14.93343 -14.67134 -14.50077 -14.28441 -14.11932 -13.83141 -13.59878 -13.30129 -13.16443 -12.98016 -12.94918 -12.67249 -12.58300 -12.20045 -12.02793 -11.71912 -11.58343 -11.45225 -11.16871 -11.10821 -10.91675 -10.82122 -10.77123 -10.64153 -10.34419 -10.30669 -10.23924 -10.21467 -9.85877 -9.79975 -9.57312 -9.06499 -8.95284 -8.76585 -8.29437 -6.99767 -5.80858 -3.09356 1.30043 2.29911 2.42464 3.18174 3.24498 3.40672 3.46178 3.46893 3.73368 4.23380 4.46875 4.55806 4.73413 4.81554 4.87244 5.05479 5.08553 5.14611 5.24040 5.24673 5.31981 5.36661 5.42144 5.52081 5.53419 5.55554 5.57497 5.65631 5.67802 5.77918 5.80315 5.81123 5.88571 6.02522 6.04354 6.05407 6.12307 6.15908 6.30555 6.35043 6.38506 6.41267 6.53242 6.59040 6.67317 6.68638 6.73949 6.90928 6.96069 7.55768 7.66548 8.00401 8.21089 8.37433 9.49257 10.05411 10.40671 11.41370 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009195 B = 0.003934 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3044.379036 B = 7115.476351 C = 9520.663016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.066 0.934 5 C 0.120 3.880 6 N -0.580 5.580 7 C 0.586 3.414 8 O -0.554 6.554 9 C -0.026 4.026 10 C -0.190 4.190 11 C 0.054 3.946 12 C -0.073 4.073 13 C -0.166 4.166 14 C -0.167 4.167 15 N -0.276 5.276 16 N -0.261 5.261 17 C 0.095 3.905 18 C 0.083 3.917 19 C -0.148 4.148 20 C 0.178 3.822 21 H 0.051 0.949 22 N -0.718 5.718 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.009 4.009 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.176 0.824 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.098 0.902 49 H 0.047 0.953 50 H 0.075 0.925 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.836 14.931 4.653 16.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.001 4.001 6 N -0.311 5.311 7 C 0.373 3.627 8 O -0.434 6.434 9 C -0.154 4.154 10 C -0.218 4.218 11 C -0.102 4.102 12 C -0.093 4.093 13 C -0.203 4.203 14 C -0.205 4.205 15 N -0.109 5.109 16 N -0.048 5.048 17 C -0.045 4.045 18 C -0.039 4.039 19 C -0.189 4.189 20 C 0.067 3.933 21 H 0.069 0.931 22 N -0.360 5.360 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.213 1.213 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.193 0.807 39 H 0.135 0.865 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.115 0.885 49 H 0.066 0.934 50 H 0.094 0.906 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.060 15.795 4.853 17.969 hybrid contribution 1.249 -1.250 -0.383 1.808 sum -5.812 14.544 4.470 16.288 Atomic orbital electron populations 1.21856 0.96817 1.01063 1.01328 1.21416 0.94261 0.95654 1.03457 1.21747 0.97500 0.96145 0.96837 0.91568 1.21778 0.98834 0.80827 0.98699 1.47802 1.09001 1.05958 1.68331 1.16905 0.85959 0.82474 0.77409 1.90759 1.13336 1.86087 1.53197 1.21426 0.94050 0.88194 1.11737 1.22524 0.95434 0.96227 1.07620 1.21015 0.92701 0.91717 1.04807 1.20005 0.85616 1.01489 1.02210 1.23040 0.96763 0.98644 1.01865 1.22984 1.02019 1.00797 0.94705 1.73046 0.99875 1.18652 1.19282 1.45495 1.10240 1.01864 1.47214 1.22180 0.75247 1.04291 1.02816 1.22719 0.78693 1.02330 1.00125 1.22594 1.01846 0.99129 0.95376 1.20232 0.89653 0.90740 0.92656 0.93110 1.42455 1.18993 1.64083 1.10496 1.19161 0.93544 1.27219 0.97050 0.91334 1.24681 0.98463 1.01413 0.95999 1.69629 1.38120 1.48032 1.02232 0.86334 0.84429 0.79221 0.76562 1.21402 1.21818 1.21343 0.93388 0.92803 0.93132 0.90422 0.91962 0.89392 0.90329 0.80711 0.86537 0.88004 0.88030 0.88408 0.88683 0.89566 0.88316 0.88901 0.89334 0.88452 0.93412 0.90615 0.78126 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.67 37.16 0.36 -1.66 16 2 C -0.11 -1.70 5.19 -26.73 -0.14 -1.84 16 3 C -0.10 -1.61 2.14 -90.50 -0.19 -1.81 16 4 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 5 C 0.12 1.97 5.03 -3.71 -0.02 1.95 16 6 N -0.58 -9.30 2.97 -173.87 -0.52 -9.82 16 7 C 0.59 9.60 7.56 -12.64 -0.10 9.51 16 8 O -0.55 -9.91 14.78 5.25 0.08 -9.83 16 9 C -0.03 -0.39 6.63 -82.06 -0.54 -0.93 16 10 C -0.19 -2.64 8.00 -38.98 -0.31 -2.95 16 11 C 0.05 0.72 6.85 -82.47 -0.57 0.16 16 12 C -0.07 -0.78 6.33 -91.77 -0.58 -1.36 16 13 C -0.17 -1.54 10.02 -26.73 -0.27 -1.81 16 14 C -0.17 -1.53 10.23 -26.73 -0.27 -1.81 16 15 N -0.28 -3.93 11.90 33.64 0.40 -3.53 16 16 N -0.26 -3.65 3.75 -63.88 -0.24 -3.89 16 17 C 0.09 1.00 10.51 59.85 0.63 1.63 16 18 C 0.08 1.29 5.02 -3.49 -0.02 1.27 16 19 C -0.15 -2.39 5.79 -26.39 -0.15 -2.54 16 20 C 0.18 3.19 2.53 -67.89 -0.17 3.02 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.72 -15.86 3.71 -53.39 -0.20 -16.06 16 23 C -0.24 -6.03 9.93 -15.06 -0.15 -6.18 16 24 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 25 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 26 N -0.93 -26.42 13.06 55.49 0.72 -25.70 16 27 Si 0.90 21.34 29.55 -169.99 -5.02 16.32 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.71 6.70 -51.93 -0.35 0.36 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.40 7.70 -51.93 -0.40 1.00 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.43 5.71 -51.93 -0.30 1.13 16 37 H 0.08 1.42 6.64 -51.93 -0.34 1.08 16 38 H 0.18 2.27 5.18 -52.49 -0.27 2.00 16 39 H 0.12 1.13 8.14 -51.92 -0.42 0.70 16 40 H 0.10 1.00 7.23 -51.93 -0.38 0.63 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.10 1.06 7.20 -51.93 -0.37 0.69 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.09 1.59 7.73 -51.93 -0.40 1.19 16 48 H 0.10 1.35 3.57 -51.93 -0.19 1.17 16 49 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 51 H 0.38 9.12 5.94 -40.82 -0.24 8.88 16 52 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -29.85 403.50 -9.56 -39.41 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -8.28 Total: 12.72 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -2.59 Total: -5.69 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.17 Total: -59.00 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.85 -9.56 -39.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037853594.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.709 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds