Wall clock time and date at job start Wed Apr 1 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47126 * 2 1 4 4 H 1.08998 * 109.49268 * 55.06601 * 3 2 1 5 5 C 1.53194 * 109.49435 * 295.00119 * 3 2 1 6 6 N 1.46927 * 108.77040 * 185.41385 * 5 3 2 7 7 C 1.34781 * 120.62644 * 233.58241 * 6 5 3 8 8 O 1.21620 * 120.00146 * 6.32500 * 7 6 5 9 9 C 1.47163 * 119.99559 * 186.31646 * 7 6 5 10 10 C 1.38402 * 126.88760 * 20.30874 * 9 7 6 11 11 C 1.39668 * 105.36409 * 180.22257 * 10 9 7 12 12 C 1.50703 * 126.07362 * 179.74633 * 11 10 9 13 13 C 1.53002 * 117.49405 * 343.61721 * 12 11 10 14 14 C 1.53002 * 60.00108 * 252.51502 * 13 12 11 15 15 N 1.30865 * 107.85858 * 359.76138 * 11 10 9 16 16 N 1.28441 * 110.92779 * 0.02562 * 15 11 10 17 17 C 1.46504 * 125.19140 * 179.97438 * 16 15 11 18 18 C 1.46924 * 118.73862 * 53.86192 * 6 5 3 19 19 C 1.53620 * 108.54279 * 306.08874 * 18 6 5 20 20 C 1.53039 * 109.24136 * 54.86299 * 19 18 6 21 21 H 1.09005 * 109.46580 * 58.52420 * 20 19 18 22 22 N 1.46498 * 109.46339 * 178.49188 * 20 19 18 23 23 C 1.36941 * 119.99327 * 275.06247 * 22 20 19 24 24 H 1.07990 * 120.00221 * 0.02562 * 23 22 20 25 25 C 1.38817 * 119.99751 * 179.97438 * 23 22 20 26 26 N 1.31621 * 120.00006 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00069 * 180.02562 * 25 23 22 28 28 H 1.48510 * 109.47275 * 0.02562 * 27 25 23 29 29 H 1.48498 * 109.47427 * 120.00052 * 27 25 23 30 30 H 1.48505 * 109.47277 * 240.00158 * 27 25 23 31 31 H 1.09001 * 109.47185 * 59.99957 * 1 2 3 32 32 H 1.09003 * 109.47164 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47110 * 299.99677 * 1 2 3 34 34 H 1.09000 * 109.47110 * 240.00323 * 2 1 3 35 35 H 1.09001 * 109.47185 * 120.00043 * 2 1 3 36 36 H 1.09000 * 109.58528 * 65.62625 * 5 3 2 37 37 H 1.08998 * 109.59047 * 305.20098 * 5 3 2 38 38 H 1.08005 * 127.31751 * 359.96903 * 10 9 7 39 39 H 1.08994 * 115.55451 * 129.32839 * 12 11 10 40 40 H 1.08994 * 117.49965 * 0.02562 * 13 12 11 41 41 H 1.09004 * 117.49623 * 145.02805 * 13 12 11 42 42 H 1.09002 * 117.49802 * 252.51911 * 14 13 12 43 43 H 1.08998 * 117.49900 * 107.48946 * 14 13 12 44 44 H 1.08998 * 109.47065 * 95.52729 * 17 16 15 45 45 H 1.08994 * 109.47243 * 215.53430 * 17 16 15 46 46 H 1.09000 * 109.46696 * 335.53277 * 17 16 15 47 47 H 1.09001 * 109.58810 * 65.92700 * 18 6 5 48 48 H 1.09005 * 109.58210 * 186.35016 * 18 6 5 49 49 H 1.08996 * 109.63599 * 294.86539 * 19 18 6 50 50 H 1.09000 * 109.42961 * 174.72093 * 19 18 6 51 51 H 0.96995 * 120.00295 * 95.05934 * 22 20 19 52 52 H 0.96996 * 120.00044 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6350 2.1280 -1.3088 6 7 2.2415 3.4656 -1.3493 7 6 1.4815 4.5579 -1.5638 8 8 0.2705 4.4564 -1.6113 9 6 2.1172 5.8734 -1.7403 10 6 3.4308 6.1198 -2.0999 11 6 3.5514 7.5109 -2.1304 12 6 4.7995 8.2862 -2.4655 13 6 6.1305 7.5325 -2.4288 14 6 5.7949 8.5462 -1.3330 15 7 2.3883 8.0216 -1.8159 16 7 1.5282 7.0960 -1.5848 17 6 0.1303 7.3178 -1.2067 18 6 3.6929 3.5893 -1.1578 19 6 4.0740 2.8880 0.1548 20 6 3.5656 1.4449 0.1216 21 1 3.9989 0.9267 -0.7339 22 7 3.9578 0.7608 1.3563 23 6 5.1962 0.1849 1.4561 24 1 5.8838 0.2355 0.6249 25 6 5.5681 -0.4629 2.6261 26 7 4.7302 -0.5241 3.6393 27 14 7.2576 -1.2478 2.7626 28 1 8.0037 -1.0405 1.4954 29 1 8.0045 -0.6234 3.8840 30 1 7.1082 -2.7033 3.0172 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5496 2.2173 -1.3538 37 1 1.9906 1.5398 -2.1547 38 1 4.2002 5.3911 -2.3084 39 1 4.6816 9.0636 -3.2203 40 1 6.1033 6.4759 -2.1627 41 1 6.8886 7.8140 -3.1597 42 1 6.3322 9.4946 -1.3431 43 1 5.5470 8.1565 -0.3457 44 1 -0.4977 7.2763 -2.0965 45 1 -0.1831 6.5454 -0.5044 46 1 0.0317 8.2968 -0.7377 47 1 4.2130 3.1178 -1.9917 48 1 3.9658 4.6433 -1.1033 49 1 3.6219 3.4139 0.9956 50 1 5.1584 2.8891 0.2648 51 1 3.3403 0.7157 2.1029 52 1 4.9902 -0.9765 4.4570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037853596.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:41 Heat of formation + Delta-G solvation = 91.091744 kcal Electronic energy + Delta-G solvation = -31590.105765 eV Core-core repulsion = 27592.927681 eV Total energy + Delta-G solvation = -3997.178084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.79116 -39.99809 -37.86944 -37.34043 -35.02693 -33.85916 -33.08436 -31.77477 -31.31430 -29.54475 -28.53004 -27.43918 -25.51532 -24.13829 -23.68694 -23.01152 -22.60924 -21.84190 -20.86271 -20.77312 -19.62268 -18.85895 -17.28029 -17.06248 -16.70702 -16.49761 -15.94011 -15.52777 -15.00937 -14.92676 -14.58006 -14.24055 -14.07726 -13.87404 -13.64283 -13.36075 -13.19223 -13.09331 -13.01634 -12.73780 -12.68938 -12.20934 -12.11849 -11.80135 -11.71416 -11.53774 -11.33890 -11.13953 -10.96745 -10.88110 -10.80508 -10.72805 -10.41448 -10.39326 -10.22631 -10.15579 -10.03744 -9.74771 -9.63296 -9.19634 -8.98839 -8.85408 -8.54986 -6.98863 -5.80363 -3.09121 1.17021 2.17571 2.31272 2.99468 3.10364 3.40179 3.45987 3.48277 3.62623 4.12125 4.31013 4.55118 4.63629 4.72107 4.78266 4.97461 5.00009 5.02648 5.11804 5.17706 5.22175 5.28177 5.31334 5.34654 5.41974 5.45836 5.52848 5.56490 5.58045 5.64267 5.67124 5.68727 5.82700 5.92212 5.94602 5.97585 6.07988 6.11820 6.26168 6.29073 6.32568 6.35644 6.42057 6.51113 6.56227 6.63849 6.79369 6.91784 7.02301 7.33986 7.66652 7.88728 8.04784 8.37700 9.49417 10.06544 10.41346 11.42114 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010012 B = 0.003297 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.052913 B = 8491.446626 C =10686.921448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.121 3.879 6 N -0.586 5.586 7 C 0.588 3.412 8 O -0.548 6.548 9 C -0.026 4.026 10 C -0.193 4.193 11 C 0.054 3.946 12 C -0.074 4.074 13 C -0.166 4.166 14 C -0.166 4.166 15 N -0.274 5.274 16 N -0.259 5.259 17 C 0.093 3.907 18 C 0.074 3.926 19 C -0.150 4.150 20 C 0.183 3.817 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.174 0.826 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.105 0.895 49 H 0.059 0.941 50 H 0.077 0.923 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.543 15.066 -13.194 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.001 4.001 6 N -0.317 5.317 7 C 0.375 3.625 8 O -0.427 6.427 9 C -0.155 4.155 10 C -0.221 4.221 11 C -0.102 4.102 12 C -0.094 4.094 13 C -0.204 4.204 14 C -0.204 4.204 15 N -0.106 5.106 16 N -0.046 5.046 17 C -0.047 4.047 18 C -0.048 4.048 19 C -0.191 4.191 20 C 0.072 3.928 21 H 0.066 0.934 22 N -0.360 5.360 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.219 1.219 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.191 0.809 39 H 0.135 0.865 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.118 0.882 46 H 0.113 0.887 47 H 0.089 0.911 48 H 0.122 0.878 49 H 0.078 0.922 50 H 0.096 0.904 51 H 0.218 0.782 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.762 15.930 -13.029 21.371 hybrid contribution 1.160 -1.192 0.389 1.708 sum -4.602 14.739 -12.640 19.954 Atomic orbital electron populations 1.21846 0.96804 1.01074 1.01285 1.21453 0.94367 0.95593 1.03557 1.21787 0.97775 0.96288 0.96554 0.91166 1.21842 0.99484 0.80607 0.98194 1.47822 1.08804 1.06169 1.68929 1.16913 0.85969 0.82454 0.77164 1.90774 1.13290 1.85994 1.52650 1.21403 0.94108 0.88215 1.11769 1.22438 0.95235 0.96232 1.08198 1.21025 0.92779 0.91683 1.04685 1.20013 0.85503 1.01452 1.02420 1.23020 0.96796 0.98564 1.01982 1.23004 1.01818 1.00874 0.94734 1.73073 0.99860 1.18643 1.19061 1.45525 1.10353 1.01817 1.46865 1.22217 0.75128 1.04551 1.02795 1.22864 0.78994 1.03515 0.99414 1.22752 1.02254 0.99117 0.94952 1.20204 0.90670 0.90596 0.91295 0.93353 1.42414 1.16511 1.64418 1.12698 1.19256 0.91772 1.27261 0.98626 0.91154 1.24723 0.98115 1.01531 0.96423 1.69667 1.35203 1.48385 1.04707 0.86169 0.84046 0.78898 0.77367 1.20564 1.21950 1.21928 0.93236 0.93133 0.92994 0.92392 0.89714 0.88934 0.91235 0.80892 0.86493 0.88164 0.88053 0.88311 0.88520 0.89480 0.88196 0.88746 0.91076 0.87754 0.92246 0.90427 0.78219 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.74 5.31 -26.73 -0.14 -1.89 16 3 C -0.10 -1.65 1.93 -90.49 -0.17 -1.82 16 4 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 5 C 0.12 1.68 5.33 -3.71 -0.02 1.66 16 6 N -0.59 -8.14 2.97 -173.87 -0.52 -8.66 16 7 C 0.59 8.68 7.56 -12.64 -0.10 8.59 16 8 O -0.55 -9.07 14.78 5.26 0.08 -8.99 16 9 C -0.03 -0.36 6.62 -82.06 -0.54 -0.90 16 10 C -0.19 -2.30 8.00 -38.99 -0.31 -2.61 16 11 C 0.05 0.66 6.85 -82.47 -0.57 0.09 16 12 C -0.07 -0.69 6.33 -91.77 -0.58 -1.27 16 13 C -0.17 -1.27 10.02 -26.73 -0.27 -1.54 16 14 C -0.17 -1.39 10.23 -26.73 -0.27 -1.66 16 15 N -0.27 -3.64 11.90 33.64 0.40 -3.24 16 16 N -0.26 -3.37 3.75 -63.88 -0.24 -3.61 16 17 C 0.09 0.92 10.52 59.85 0.63 1.55 16 18 C 0.07 0.95 5.28 -3.49 -0.02 0.93 16 19 C -0.15 -2.43 5.67 -26.39 -0.15 -2.58 16 20 C 0.18 3.32 2.19 -67.89 -0.15 3.17 16 21 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 22 N -0.72 -16.77 4.33 -53.38 -0.23 -17.00 16 23 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 24 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -27.25 13.06 55.49 0.72 -26.52 16 27 Si 0.90 21.70 29.55 -169.99 -5.02 16.67 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 31 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.60 7.22 -51.93 -0.37 1.22 16 36 H 0.09 1.33 5.71 -51.93 -0.30 1.03 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.17 1.72 5.17 -52.48 -0.27 1.45 16 39 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.10 0.77 7.22 -51.93 -0.37 0.40 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.10 1.04 7.19 -51.93 -0.37 0.66 16 46 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.10 1.22 3.57 -51.93 -0.19 1.04 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 51 H 0.38 9.73 7.51 -40.82 -0.31 9.42 16 52 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 407.10 15.07 6.13 6.13 Total: -1.00 -31.33 407.10 -9.64 -40.96 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -8.41 Total: 11.00 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -2.55 Total: -6.75 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.14 Total: -59.03 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.33 -9.64 -40.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037853596.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.054 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds