Wall clock time and date at job start Wed Apr 1 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46938 * 2 1 4 4 H 1.08996 * 109.49854 * 305.00300 * 3 2 1 5 5 C 1.53191 * 109.49727 * 65.06230 * 3 2 1 6 6 N 1.46930 * 108.77839 * 174.61947 * 5 3 2 7 7 C 1.34769 * 120.63094 * 126.41504 * 6 5 3 8 8 O 1.21618 * 120.00263 * 352.77237 * 7 6 5 9 9 C 1.47329 * 119.99907 * 172.77862 * 7 6 5 10 10 C 1.36566 * 126.21392 * 172.73136 * 9 7 6 11 11 N 1.34872 * 106.78756 * 179.81604 * 10 9 7 12 12 C 1.36306 * 107.85936 * 0.47335 * 11 10 9 13 13 N 1.29788 * 108.92430 * 359.66639 * 12 11 10 14 14 C 1.51106 * 123.89882 * 179.61262 * 12 11 10 15 15 C 1.53383 * 108.19576 * 344.07292 * 14 12 11 16 16 C 1.53142 * 109.25837 * 48.93977 * 15 14 12 17 17 C 1.46578 * 127.49817 * 180.25249 * 11 10 9 18 18 C 1.46931 * 118.73408 * 306.39091 * 6 5 3 19 19 C 1.53191 * 108.77438 * 53.61056 * 18 6 5 20 20 C 1.53037 * 109.52308 * 184.91718 * 3 2 1 21 21 H 1.09008 * 109.46154 * 298.68445 * 20 3 2 22 22 N 1.46490 * 109.46271 * 58.65026 * 20 3 2 23 23 C 1.36938 * 120.00064 * 205.00422 * 22 20 3 24 24 H 1.08005 * 120.00314 * 359.97438 * 23 22 20 25 25 C 1.38818 * 120.00130 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99708 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00086 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47520 * 89.99512 * 27 25 23 29 29 H 1.48500 * 109.46610 * 209.99753 * 27 25 23 30 30 H 1.48500 * 109.46606 * 329.99246 * 27 25 23 31 31 H 1.08991 * 109.47366 * 300.00319 * 1 2 3 32 32 H 1.09002 * 109.46522 * 60.00368 * 1 2 3 33 33 H 1.08998 * 109.46737 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47176 * 240.00138 * 2 1 3 35 35 H 1.09004 * 109.47235 * 119.99820 * 2 1 3 36 36 H 1.09001 * 109.59084 * 294.40925 * 5 3 2 37 37 H 1.09001 * 109.58738 * 54.68692 * 5 3 2 38 38 H 1.08001 * 126.60403 * 359.92999 * 10 9 7 39 39 H 1.09000 * 109.71464 * 103.74237 * 14 12 11 40 40 H 1.08996 * 109.71829 * 224.39208 * 14 12 11 41 41 H 1.09000 * 109.50791 * 289.00777 * 15 14 12 42 42 H 1.08999 * 109.54278 * 168.89405 * 15 14 12 43 43 H 1.08989 * 109.46320 * 170.18697 * 16 15 14 44 44 H 1.08997 * 109.46065 * 50.21468 * 16 15 14 45 45 H 1.09002 * 109.58627 * 282.88663 * 17 11 10 46 46 H 1.09001 * 109.58606 * 43.16906 * 17 11 10 47 47 H 1.08999 * 109.57917 * 173.39500 * 18 6 5 48 48 H 1.09000 * 109.58487 * 293.67778 * 18 6 5 49 49 H 1.08996 * 109.49998 * 65.31378 * 19 18 6 50 50 H 1.08998 * 109.49795 * 185.38037 * 19 18 6 51 51 H 0.97002 * 119.99874 * 24.99493 * 22 20 3 52 52 H 0.96994 * 119.99718 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9820 -0.8416 5 6 1.6364 2.1275 1.3094 6 7 2.2422 3.4655 1.3496 7 6 1.4820 4.5573 1.5652 8 8 0.2703 4.4579 1.5978 9 6 2.1188 5.8713 1.7613 10 6 1.4773 7.0737 1.8493 11 7 2.4299 8.0111 2.0307 12 6 3.6390 7.3817 2.0415 13 7 3.4517 6.1074 1.8817 14 6 4.9593 8.0960 2.2138 15 6 4.7304 9.5923 1.9659 16 6 3.5196 10.0595 2.7790 17 6 2.2414 9.4562 2.1868 18 6 3.6926 3.5905 1.1507 19 6 4.0731 2.8891 -0.1570 20 6 3.5654 1.4457 -0.1236 21 1 4.0001 0.9276 0.7312 22 7 3.9564 0.7622 -1.3589 23 6 5.1949 0.1869 -1.4605 24 1 5.8837 0.2375 -0.6301 25 6 5.5657 -0.4604 -2.6312 26 7 4.7265 -0.5216 -3.6434 27 14 7.2554 -1.2445 -2.7701 28 1 7.1871 -2.6534 -2.3061 29 1 7.7019 -1.2106 -4.1860 30 1 8.2206 -0.4924 -1.9286 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.5510 2.2163 1.3560 37 1 1.9912 1.5379 2.1548 38 1 0.4122 7.2414 1.7877 39 1 5.3303 7.9438 3.2274 40 1 5.6825 7.7106 1.4951 41 1 4.5436 9.7611 0.9054 42 1 5.6135 10.1522 2.2737 43 1 3.4573 11.1471 2.7452 44 1 3.6294 9.7340 3.8134 45 1 2.0417 9.9059 1.2141 46 1 1.4019 9.6450 2.8559 47 1 3.9638 4.6446 1.0923 48 1 4.2172 3.1237 1.9843 49 1 3.6196 3.4149 -0.9972 50 1 5.1573 2.8913 -0.2689 51 1 3.3379 0.7169 -2.1048 52 1 4.9854 -0.9742 -4.4612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037854398.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:14 Heat of formation + Delta-G solvation = 32.018307 kcal Electronic energy + Delta-G solvation = -31363.263547 eV Core-core repulsion = 27363.523847 eV Total energy + Delta-G solvation = -3999.739700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 5.13 seconds Orbital eigenvalues (eV) -42.64436 -39.69222 -37.60182 -36.80626 -34.57045 -33.76510 -33.53068 -31.56014 -30.44321 -29.27927 -28.92817 -28.45140 -25.58056 -24.53744 -23.69624 -23.04162 -22.58161 -21.93235 -20.62297 -19.71021 -19.42366 -18.83888 -17.33730 -16.95205 -16.57089 -16.28906 -15.70745 -15.07082 -14.85623 -14.74492 -14.43944 -14.19885 -14.12546 -14.00836 -13.74070 -13.62954 -13.41458 -13.15230 -12.97808 -12.84309 -12.51704 -12.26165 -11.93714 -11.81610 -11.69286 -11.62816 -11.47451 -11.40667 -11.14328 -10.84241 -10.79375 -10.53751 -10.25229 -10.11807 -10.10889 -9.99808 -9.89510 -9.67908 -9.44011 -9.33539 -8.73852 -8.64115 -8.14400 -6.84271 -5.68775 -2.96244 1.53256 2.26844 2.33729 3.35999 3.47974 3.53150 3.54674 3.64865 3.84326 4.02378 4.10528 4.15349 4.56598 4.65737 4.70492 4.81595 4.84957 4.91599 5.11905 5.18682 5.28104 5.33047 5.35457 5.40114 5.50008 5.54811 5.62114 5.63636 5.74364 5.77991 5.80352 5.87361 5.88782 6.00546 6.04342 6.21713 6.28121 6.30930 6.45499 6.53168 6.56460 6.62293 6.66656 6.72263 6.85239 6.97958 7.03364 7.16156 7.27055 7.64345 7.77704 7.85504 8.48636 8.50012 9.61013 10.20410 10.55645 11.54027 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.002843 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.660628 B = 9845.580463 C =11751.564689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.068 0.932 5 C 0.119 3.881 6 N -0.589 5.589 7 C 0.600 3.400 8 O -0.558 6.558 9 C -0.053 4.053 10 C 0.033 3.967 11 N -0.455 5.455 12 C 0.208 3.792 13 N -0.449 5.449 14 C -0.035 4.035 15 C -0.127 4.127 16 C -0.135 4.135 17 C 0.101 3.899 18 C 0.083 3.917 19 C -0.147 4.147 20 C 0.182 3.818 21 H 0.046 0.954 22 N -0.721 5.721 23 C -0.232 4.232 24 H 0.069 0.931 25 C -0.016 4.016 26 N -0.934 5.934 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.187 0.813 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.132 0.868 48 H 0.056 0.944 49 H 0.054 0.946 50 H 0.072 0.928 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 23.342 14.863 28.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.087 0.913 5 C -0.004 4.004 6 N -0.320 5.320 7 C 0.388 3.612 8 O -0.437 6.437 9 C -0.181 4.181 10 C -0.106 4.106 11 N -0.137 5.137 12 C -0.055 4.055 13 N -0.169 5.169 14 C -0.074 4.074 15 C -0.165 4.165 16 C -0.173 4.173 17 C -0.021 4.021 18 C -0.040 4.040 19 C -0.189 4.189 20 C 0.072 3.928 21 H 0.064 0.936 22 N -0.362 5.362 23 C -0.363 4.363 24 H 0.087 0.913 25 C -0.211 4.211 26 N -0.583 5.583 27 Si 0.735 3.265 28 H -0.219 1.219 29 H -0.220 1.220 30 H -0.208 1.208 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.204 0.796 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.111 0.889 47 H 0.149 0.851 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.090 0.910 51 H 0.217 0.783 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.405 22.723 14.882 27.517 hybrid contribution 0.143 0.066 -0.485 0.510 sum -4.262 22.788 14.397 27.290 Atomic orbital electron populations 1.21840 0.96889 1.00883 1.01320 1.21451 0.94309 0.95859 1.03353 1.21755 0.97707 0.96045 0.96766 0.91315 1.21752 0.99286 0.81631 0.97733 1.47925 1.09270 1.05913 1.68847 1.16929 0.85588 0.82245 0.76407 1.90745 1.13332 1.85682 1.53973 1.20635 0.89661 0.93949 1.13872 1.22382 0.95723 0.87736 1.04760 1.45313 1.07054 1.08085 1.53250 1.23708 0.88380 0.88323 1.05081 1.70260 1.15578 1.12613 1.18400 1.20269 0.89955 0.92961 1.04222 1.21689 0.98578 0.95217 1.00993 1.21901 0.93234 1.01555 1.00594 1.22091 1.00200 0.76890 1.02924 1.22686 0.78178 1.05676 0.97494 1.22624 1.01733 0.98685 0.95818 1.20228 0.90735 0.90899 0.90909 0.93611 1.42423 1.16353 1.64562 1.12819 1.19236 0.91777 1.26823 0.98479 0.91285 1.24714 0.98090 1.01822 0.96487 1.69665 1.35235 1.48638 1.04731 0.86230 0.84236 0.79306 0.76688 1.21874 1.21952 1.20837 0.93205 0.93021 0.93280 0.89876 0.92531 0.89323 0.91809 0.79579 0.89008 0.88189 0.90941 0.89745 0.89124 0.90457 0.89387 0.88877 0.85080 0.92549 0.92755 0.90973 0.78305 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.67 37.16 0.36 -1.93 16 2 C -0.11 -1.96 5.31 -26.73 -0.14 -2.10 16 3 C -0.10 -1.87 1.92 -90.50 -0.17 -2.05 16 4 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 5 C 0.12 1.98 5.34 -3.71 -0.02 1.96 16 6 N -0.59 -10.11 2.97 -174.07 -0.52 -10.63 16 7 C 0.60 10.47 7.67 -12.57 -0.10 10.37 16 8 O -0.56 -10.74 16.32 5.26 0.09 -10.66 16 9 C -0.05 -0.79 6.66 -82.97 -0.55 -1.34 16 10 C 0.03 0.38 11.33 -16.82 -0.19 0.19 16 11 N -0.45 -4.16 3.11 -113.42 -0.35 -4.51 16 12 C 0.21 2.20 7.64 -154.64 -1.18 1.02 16 13 N -0.45 -6.27 7.76 -7.01 -0.05 -6.32 16 14 C -0.04 -0.23 6.33 -27.49 -0.17 -0.41 16 15 C -0.13 -0.51 5.95 -26.46 -0.16 -0.67 16 16 C -0.14 -0.43 5.93 -26.53 -0.16 -0.59 16 17 C 0.10 0.47 6.96 -3.87 -0.03 0.44 16 18 C 0.08 1.38 6.09 -3.71 -0.02 1.36 16 19 C -0.15 -2.85 5.66 -26.61 -0.15 -3.00 16 20 C 0.18 3.77 2.19 -67.89 -0.15 3.62 16 21 H 0.05 0.97 8.08 -51.92 -0.42 0.55 16 22 N -0.72 -18.20 4.33 -53.38 -0.23 -18.43 16 23 C -0.23 -6.44 9.93 -15.06 -0.15 -6.59 16 24 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 25 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 26 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 27 Si 0.90 22.65 29.55 -169.99 -5.02 17.63 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 30 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 31 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.71 7.22 -51.93 -0.37 1.34 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.50 5.72 -51.93 -0.30 1.21 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.19 1.80 8.06 -52.49 -0.42 1.37 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.33 8.12 -51.93 -0.42 -0.10 16 42 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.09 0.11 8.14 -51.94 -0.42 -0.31 16 44 H 0.08 0.28 8.11 -51.93 -0.42 -0.14 16 45 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.13 2.16 4.11 -61.03 -0.25 1.91 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 50 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 51 H 0.38 10.40 7.51 -40.82 -0.31 10.09 16 52 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 402.28 15.07 6.06 6.06 Total: -1.00 -34.43 402.28 -11.12 -45.54 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -8.73 Total: 9.33 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -3.08 Total: -0.25 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: -0.43 Total: -67.65 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.43 -11.12 -45.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037854398.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.562 kcal (2) G-P(sol) polarization free energy of solvation -34.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.13 seconds