Wall clock time and date at job start Wed Apr 1 2020 05:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47283 * 2 1 4 4 H 1.09007 * 109.52179 * 304.91993 * 3 2 1 5 5 C 1.53189 * 109.49573 * 64.99925 * 3 2 1 6 6 N 1.46927 * 108.89020 * 174.65914 * 5 3 2 7 7 C 1.34779 * 120.63398 * 126.29812 * 6 5 3 8 8 O 1.21625 * 119.99808 * 352.76571 * 7 6 5 9 9 C 1.47324 * 120.00470 * 172.76089 * 7 6 5 10 10 C 1.36567 * 126.21285 * 172.68871 * 9 7 6 11 11 N 1.34867 * 106.78884 * 179.97438 * 10 9 7 12 12 C 1.36313 * 107.86152 * 0.04687 * 11 10 9 13 13 N 1.29792 * 108.92022 * 359.65845 * 12 11 10 14 14 C 1.51099 * 123.90585 * 179.90389 * 12 11 10 15 15 C 1.53391 * 108.18745 * 344.03702 * 14 12 11 16 16 C 1.53138 * 109.25335 * 48.96456 * 15 14 12 17 17 C 1.46576 * 127.50200 * 180.08496 * 11 10 9 18 18 C 1.46928 * 118.74068 * 306.32109 * 6 5 3 19 19 C 1.53195 * 108.77737 * 53.60695 * 18 6 5 20 20 C 1.53045 * 109.30926 * 305.36899 * 19 18 6 21 21 H 1.09007 * 109.45514 * 181.36644 * 20 19 18 22 22 N 1.46500 * 109.46147 * 301.33947 * 20 19 18 23 23 C 1.36927 * 120.00060 * 275.00494 * 22 20 19 24 24 H 1.08004 * 120.00152 * 359.97438 * 23 22 20 25 25 C 1.38813 * 120.00240 * 180.02562 * 23 22 20 26 26 N 1.31611 * 120.00463 * 179.97438 * 25 23 22 27 27 Si 1.86804 * 119.99758 * 359.97438 * 25 23 22 28 28 H 1.48497 * 109.47049 * 89.99774 * 27 25 23 29 29 H 1.48493 * 109.47402 * 210.00122 * 27 25 23 30 30 H 1.48498 * 109.46983 * 330.00347 * 27 25 23 31 31 H 1.08997 * 109.46768 * 60.00008 * 1 2 3 32 32 H 1.08994 * 109.47249 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46650 * 300.00251 * 1 2 3 34 34 H 1.09005 * 109.47130 * 239.99818 * 2 1 3 35 35 H 1.08999 * 109.47283 * 119.99987 * 2 1 3 36 36 H 1.08995 * 109.58907 * 54.80350 * 5 3 2 37 37 H 1.09003 * 109.59115 * 294.51261 * 5 3 2 38 38 H 1.07996 * 126.60697 * 359.97438 * 10 9 7 39 39 H 1.08996 * 109.71958 * 103.70467 * 14 12 11 40 40 H 1.08993 * 109.72084 * 224.36623 * 14 12 11 41 41 H 1.09001 * 109.51235 * 168.89769 * 15 14 12 42 42 H 1.08998 * 109.50618 * 288.98490 * 15 14 12 43 43 H 1.08996 * 109.46204 * 50.21629 * 16 15 14 44 44 H 1.09000 * 109.46076 * 170.19957 * 16 15 14 45 45 H 1.08997 * 109.58757 * 282.60413 * 17 11 10 46 46 H 1.09003 * 109.58419 * 43.02670 * 17 11 10 47 47 H 1.08997 * 109.59256 * 173.39683 * 18 6 5 48 48 H 1.09004 * 109.58697 * 293.82450 * 18 6 5 49 49 H 1.09003 * 109.49062 * 65.31625 * 19 18 6 50 50 H 1.08994 * 109.49800 * 185.38352 * 19 18 6 51 51 H 0.97001 * 119.99251 * 94.99981 * 22 20 19 52 52 H 0.97007 * 120.00461 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6070 1.9820 -0.8424 5 6 1.6351 2.1280 1.3088 6 7 2.2389 3.4667 1.3512 7 6 1.4766 4.5575 1.5645 8 8 0.2649 4.4564 1.5930 9 6 2.1109 5.8723 1.7635 10 6 1.4675 7.0739 1.8488 11 7 2.4183 8.0128 2.0307 12 6 3.6276 7.3842 2.0541 13 7 3.4420 6.1087 1.9015 14 6 4.9460 8.0994 2.2373 15 6 4.7186 9.5950 1.9834 16 6 3.5003 10.0636 2.7841 17 6 2.2278 9.4583 2.1813 18 6 3.6896 3.5940 1.1561 19 6 4.0747 2.8939 -0.1509 20 6 3.5689 1.4498 -0.1196 21 1 3.8627 0.9421 -1.0384 22 7 4.1511 0.7535 1.0304 23 6 5.3898 0.1790 0.9276 24 1 5.9374 0.2388 -0.0014 25 6 5.9413 -0.4812 2.0170 26 7 7.1317 -1.0338 1.9182 27 14 4.9938 -0.5852 3.6236 28 1 4.1522 -1.8087 3.6235 29 1 5.9492 -0.6417 4.7590 30 1 4.1268 0.6119 3.7653 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.9908 1.5398 2.1546 37 1 0.5496 2.2152 1.3550 38 1 0.4024 7.2402 1.7833 39 1 5.3072 7.9499 3.2547 40 1 5.6761 7.7126 1.5265 41 1 5.5987 10.1556 2.2983 42 1 4.5425 9.7610 0.9206 43 1 3.6007 9.7409 3.8203 44 1 3.4377 11.1512 2.7468 45 1 2.0364 9.9053 1.2058 46 1 1.3839 9.6484 2.8446 47 1 3.9597 4.6484 1.0991 48 1 4.2129 3.1252 1.9896 49 1 3.6226 3.4196 -0.9920 50 1 5.1592 2.8978 -0.2599 51 1 3.6591 0.6996 1.8646 52 1 7.5172 -1.4948 2.6796 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037854405.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:29 Heat of formation + Delta-G solvation = 38.448930 kcal Electronic energy + Delta-G solvation = -31965.936680 eV Core-core repulsion = 27966.475833 eV Total energy + Delta-G solvation = -3999.460847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.60379 -39.76088 -37.74609 -36.77581 -34.41220 -33.74444 -33.57538 -31.61387 -30.40202 -29.63229 -28.89578 -28.56342 -25.70850 -24.49838 -23.75469 -23.06174 -22.55317 -22.30226 -20.67263 -19.55488 -19.34140 -18.24871 -17.74788 -17.18324 -16.52102 -16.23030 -15.68653 -15.13590 -14.74380 -14.68903 -14.40568 -14.31886 -14.12273 -14.05516 -13.87560 -13.70258 -13.39423 -13.20278 -13.10496 -12.88470 -12.35920 -12.32108 -12.19328 -11.85081 -11.66431 -11.58673 -11.46552 -11.44453 -11.12264 -11.05782 -10.81355 -10.69464 -10.35976 -10.24974 -10.10958 -9.99344 -9.86313 -9.64445 -9.46171 -9.26316 -8.77193 -8.59960 -8.05046 -7.15300 -5.69657 -3.03191 1.56351 2.31976 2.37132 3.41619 3.42916 3.46873 3.50899 3.67790 3.88548 4.06460 4.13913 4.19162 4.59476 4.66045 4.73239 4.84607 4.88530 4.94896 5.14344 5.19342 5.23351 5.25928 5.35890 5.39658 5.41243 5.52346 5.57282 5.62451 5.66220 5.70359 5.78314 5.88365 5.91325 5.92483 5.94883 6.10594 6.20509 6.26560 6.32795 6.38903 6.46441 6.59567 6.63813 6.71030 6.80049 6.85575 6.90374 7.02842 7.22216 7.70349 7.92174 8.08023 8.49844 8.52745 9.29156 10.02229 10.23105 11.49109 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.003434 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.522372 B = 8150.731534 C = 9638.614945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.071 0.929 5 C 0.117 3.883 6 N -0.587 5.587 7 C 0.599 3.401 8 O -0.562 6.562 9 C -0.052 4.052 10 C 0.031 3.969 11 N -0.455 5.455 12 C 0.208 3.792 13 N -0.446 5.446 14 C -0.036 4.036 15 C -0.126 4.126 16 C -0.136 4.136 17 C 0.101 3.899 18 C 0.090 3.910 19 C -0.147 4.147 20 C 0.184 3.816 21 H 0.057 0.943 22 N -0.743 5.743 23 C -0.234 4.234 24 H 0.090 0.910 25 C 0.005 3.995 26 N -0.936 5.936 27 Si 0.877 3.123 28 H -0.285 1.285 29 H -0.292 1.292 30 H -0.278 1.278 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.187 0.813 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.129 0.871 48 H 0.070 0.930 49 H 0.046 0.954 50 H 0.075 0.925 51 H 0.360 0.640 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.067 24.537 -0.876 26.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.006 4.006 6 N -0.317 5.317 7 C 0.387 3.613 8 O -0.441 6.441 9 C -0.181 4.181 10 C -0.107 4.107 11 N -0.138 5.138 12 C -0.055 4.055 13 N -0.166 5.166 14 C -0.075 4.075 15 C -0.164 4.164 16 C -0.173 4.173 17 C -0.021 4.021 18 C -0.032 4.032 19 C -0.188 4.188 20 C 0.074 3.926 21 H 0.075 0.925 22 N -0.387 5.387 23 C -0.364 4.364 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.585 5.585 27 Si 0.707 3.293 28 H -0.212 1.212 29 H -0.219 1.219 30 H -0.204 1.204 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.204 0.796 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.111 0.889 47 H 0.145 0.855 48 H 0.088 0.912 49 H 0.065 0.935 50 H 0.094 0.906 51 H 0.194 0.806 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.891 23.900 -0.932 25.882 hybrid contribution -1.142 0.354 1.299 1.766 sum -11.033 24.253 0.368 26.647 Atomic orbital electron populations 1.21855 0.96675 1.01042 1.01509 1.21424 0.94430 0.95827 1.03195 1.21836 0.97497 0.95978 0.97212 0.91086 1.21681 0.98961 0.81985 0.97934 1.47931 1.09475 1.05657 1.68641 1.16937 0.85560 0.82278 0.76500 1.90733 1.13368 1.85750 1.54295 1.20636 0.89746 0.93916 1.13810 1.22353 0.95668 0.87749 1.04976 1.45326 1.07100 1.08002 1.53352 1.23731 0.88368 0.88271 1.05107 1.70337 1.15619 1.12480 1.18126 1.20277 0.90004 0.92873 1.04323 1.21685 0.98505 0.95264 1.00937 1.21913 0.93270 1.01492 1.00672 1.22085 1.00240 0.76921 1.02804 1.22547 0.77709 1.04794 0.98193 1.22482 1.01828 0.98261 0.96263 1.20270 0.89369 0.91057 0.91892 0.92533 1.42825 1.19574 1.65834 1.10428 1.19066 0.92104 1.26098 0.99132 0.89224 1.24602 0.96478 1.00520 0.97422 1.69690 1.16363 1.41676 1.30724 0.86667 0.79492 0.77812 0.85288 1.21158 1.21876 1.20391 0.93137 0.93129 0.92834 0.91577 0.91224 0.91770 0.89449 0.79640 0.88933 0.88161 0.89748 0.91005 0.90426 0.89148 0.89421 0.88936 0.85458 0.91194 0.93524 0.90594 0.80636 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 37.16 0.36 -1.74 16 2 C -0.11 -1.79 5.21 -26.73 -0.14 -1.93 16 3 C -0.11 -1.80 2.15 -90.34 -0.19 -1.99 16 4 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 5 C 0.12 2.10 5.03 -3.71 -0.02 2.08 16 6 N -0.59 -10.79 2.97 -174.07 -0.52 -11.30 16 7 C 0.60 10.91 7.67 -12.56 -0.10 10.82 16 8 O -0.56 -11.07 16.32 5.26 0.09 -10.99 16 9 C -0.05 -0.83 6.65 -82.97 -0.55 -1.38 16 10 C 0.03 0.38 11.33 -16.82 -0.19 0.19 16 11 N -0.46 -4.42 3.11 -113.41 -0.35 -4.77 16 12 C 0.21 2.39 7.64 -154.63 -1.18 1.20 16 13 N -0.45 -6.76 7.78 -7.01 -0.05 -6.81 16 14 C -0.04 -0.27 6.33 -27.49 -0.17 -0.45 16 15 C -0.13 -0.57 5.95 -26.46 -0.16 -0.73 16 16 C -0.14 -0.51 5.94 -26.52 -0.16 -0.67 16 17 C 0.10 0.51 6.96 -3.86 -0.03 0.49 16 18 C 0.09 1.67 5.83 -3.71 -0.02 1.64 16 19 C -0.15 -2.72 5.78 -26.61 -0.15 -2.88 16 20 C 0.18 3.61 2.54 -67.73 -0.17 3.44 16 21 H 0.06 1.15 8.08 -51.92 -0.42 0.73 16 22 N -0.74 -17.35 3.53 -53.23 -0.19 -17.54 16 23 C -0.23 -6.50 10.41 -15.06 -0.16 -6.66 16 24 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 25 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 26 N -0.94 -29.48 13.97 55.49 0.78 -28.70 16 27 Si 0.88 22.59 27.74 -169.99 -4.71 17.87 16 28 H -0.28 -7.29 7.11 56.52 0.40 -6.88 16 29 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 30 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.74 6.69 -51.93 -0.35 0.39 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.26 7.71 -51.93 -0.40 0.86 16 36 H 0.06 1.24 6.64 -51.93 -0.34 0.89 16 37 H 0.09 1.54 5.71 -51.93 -0.30 1.24 16 38 H 0.19 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 43 H 0.08 0.34 8.11 -51.93 -0.42 -0.08 16 44 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.13 2.27 4.14 -59.84 -0.25 2.02 16 48 H 0.07 1.49 7.74 -51.93 -0.40 1.09 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 51 H 0.36 8.51 3.81 -40.82 -0.16 8.35 16 52 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 395.63 15.07 5.96 5.96 Total: -1.00 -35.04 395.63 -10.68 -45.72 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -8.54 Total: 9.09 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -3.13 Total: 1.48 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -0.34 Total: -69.13 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.04 -10.68 -45.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037854405.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.165 kcal (2) G-P(sol) polarization free energy of solvation -35.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds